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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019284 ID=TCONS_00019284|Name=TCONS_00019284|organism=Clytia hemisphaerica|type=transcript|length=2594bpRun BLAST on NCBI transcript from alignment at sc0000323:176033..200718- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019284 ID=TCONS_00019284|Name=TCONS_00019284|organism=Clytia hemisphaerica|type=transcript|length=24686bp|location=Sequence derived from alignment at sc0000323:176033..200718- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019284 vs. Swiss-Prot (Human)
Match: RN213 (E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1 SV=3) HSP 1 Score: 507.679 bits (1306), Expect = 8.870e-155 Identity = 330/901 (36.63%), Postives = 476/901 (52.83%), Query Frame = 2
Query: 5 HEGSNHLIIICTEENENQSNLRDAFEKSRVENFILSD---QIVQVEI-GKILKSGQMNFASAVDDDKCSARVILSERGGMGKSLYVKNKERKLEEVINKSPPCRERRSRCHKNNVVVTIPIHNVEVSVEDVVDQLCAFEGHIENVFPRIYHFDIAPLVSRGLDNFIFNVVILGYLQTQTGKAWHKQQSDLCIFEITE------TANKKDLFKRYLQ----KLLPTTICKTPQEVIAM--FNRREDT-SNIYLELLFDKPYQRVYQYLHYYHANGQNLKDMVYVEQEVNRNVHQLLTLFLSSCGIRDPSWLELQNFVLFFNTQLEDFETNYFASAN---EDFPGFKTFVLKFLLRMSKDFATRSLH-DNEAAGEHMV-------------ELRKHWETEYHPYLFFNEQKDSFSFIGFKVVPNRNREGSMNLIEPESNRLIEDNVMSLELFERLQCNMINDIQHLQTDPYKMRDVDKLNLMGRVLGIYEVANPDSTYELTPDNMKKIFAIHMRLRCGIPVILMGETGCGKTRLIKYMCDLRVGASCIRNMVLIKVHGGVTALDIEEKIKRTKIIAKENMINYILYARGYDYKDENLPIEVRQNVEEEVKDHIKNKTKIRDEELLRTILFLDEANTSEAIGLIKEIMIDGTLNGKALNFDRYCIDVIAACNPYRRHSDVMIKRLESAGLGYHVTAEQSYEKFGDIPLRHLVYRVHPLPESMKPLVWDFGSLSNEVEFKYSRQIIDRCVGNEQLPRNDNFKDVLLTVLTKSQEYMRSKKNECSFVSLRDIERGVSVTSWFYRKMDLFSKFIVEDLQEDPTRYQIATEKLRK-----SLLLAVAVCYIAKLDERAEFIEYLKEFFTGPFALEDDTADVEKEIERFQKMFIDHLDLKDNIAKNKAL 2590
H L+++C + E+ L AF + +V F+ + +Q + G Q A+AV +D+ ++ SER G+GKSLYVK K++ +N KN + TI + + +V V+ L F P ++H D+ V G+ F+F ++IL YL GK W + L I EI E + + L R Q + P C+ P+EVI M R DT + L + +QR YQYL ++ N Q+L Y E V + L FL CG+ +PSW EL+NF F N QL D E + F + + + GFK FV+ F++ M++DFAT SLH +++ G+HMV LRK WE+E HPY+FFN+ + +FIGF + PN N GS++ I + ++I+ +VM+ +L++ L + D K+ KL + LGI + +PD TYELT DNM KI AI MR RCGIPVI+MGETGCGKTRLIK++ DLR G + + L+KVHGG TA I +++ + +A N +D+ L TILF DEANT+EAI IKE++ D ++G+ L D + +IAACNPYR+HS+ MI RLESAGLGY V+ E++ ++ G IPLR LVYRVH LP S+ PLVWDFG LS+ E Y +QI+ R V E + ++N V+ VL SQ +MR ++ECSFVSLRD+ER V V WF+ S ++ L ++ ++ + SL+LA+ VCY A L+++ + + + FF P+ DD+ + EI R Q +F+D + L+ IAKN AL
Sbjct: 1920 HREDYQLVMVCDGDWEH-CYLPSAFSQHKV--FVTPQAPLEAIQAYLAGHYRVPKQTLSAAAVFNDRLCVGIVASERAGVGKSLYVKRLHDKMKMQLNV------------KNVPLKTIRLIDPQVDESRVLGALLPFLDAQYQKVPVLFHLDVTSSVQTGIWVFLFKLLILQYLMDINGKMWLRNPCHLYIVEILERRTSVPSRSSSALRTRVPQFSFLDIFPKVTCRPPKEVIDMELSALRSDTEPGMDLWEFCSETFQRPYQYLRRFNQN-QDLDTFQYQEGSVEGTPEECLQHFLFHCGVINPSWSELRNFARFLNYQLRDCEASLFCNPSFIGDTLRGFKKFVVTFMIFMARDFATPSLHTSDQSPGKHMVTMDGVREEDLAPFSLRKRWESEPHPYVFFNDDHTTMTFIGFHLQPNIN--GSVDAISHLTGKVIKRDVMTRDLYQGLLLQRVP----FNVDFDKLPRHKKLERLCLTLGIPQATDPDKTYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLRRGGTNADTIKLVKVHGGTTADMIYSRVREAENVAFAN----------------------------------------KDQHQLDTILFFDEANTTEAISCIKEVLCDHMVDGQPLAEDS-GLHIIAACNPYRKHSEEMICRLESAGLGYRVSMEETADRLGSIPLRQLVYRVHALPPSLIPLVWDFGQLSDVAEKLYIQQIVQRLV--ESISLDENGTRVITEVLCASQGFMRKTEDECSFVSLRDVERCVKVFRWFHEH----SAMLLAQLNAFLSKSSVSKNHTERDPVLWSLMLAIGVCYHASLEKKDSYRKAIARFFPKPY---DDSRLLLDEITRAQDLFLDGVPLRKTIAKNLAL 2748 The following BLAST results are available for this feature:
BLAST of TCONS_00019284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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