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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019271 ID=TCONS_00019271|Name=TCONS_00019271|organism=Clytia hemisphaerica|type=transcript|length=2419bpRun BLAST on NCBI protein sequence of TCONS_00019271-protein >TCONS_00019271-protein ID=TCONS_00019271-protein|Name=TCONS_00019271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp MQFHIFGLLLFQAVCFGCSEAGKTSKKDTQHTHMSGRHVCSRTKESFKYYRun BLAST on NCBI transcript from alignment at sc0000323:52283..101601- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019271 ID=TCONS_00019271|Name=TCONS_00019271|organism=Clytia hemisphaerica|type=transcript|length=49319bp|location=Sequence derived from alignment at sc0000323:52283..101601- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000323:52283..101601- >TCONS_00019271 ID=TCONS_00019271|Name=TCONS_00019271|organism=Clytia hemisphaerica|type=CDS|length=13761bp|location=Sequence derived from alignment at sc0000323:52283..101601- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019271 vs. Swiss-Prot (Human)
Match: EGFL7 (Epidermal growth factor-like protein 7 OS=Homo sapiens GN=EGFL7 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 3.723e-24 Identity = 75/267 (28.09%), Postives = 118/267 (44.19%), Query Frame = 2
Query: 488 TQHTHMSGRHVCSRTKESFKYYPVERTLCIPKFITFLRPCTDRWGKKTKGMCTAYRQKYTKVIKTFYQKH---KESKVEFSCCAGWKKVPGKKG-CTQPTCKGNCNGNGLCTGPNKCACTPGWQGPSCQTDINECLKNNGKCQQKCINYRGTFKCQCDPGYILQKDGRSCKFCIKCSEEYQQLEKRMTNVEKETSTLKTENKKLKSEINHIDTTLQ---KQQDEIMVNALEHQ------------NQLKSISKIQEKMKEDHEQQQS 1231
T+H + GR VC+ PV + + FL C G + C+ YR Y +T Y++ ++ ++CC GWK+ G G C C+ C G C P +C C GW+G +CQ+D++EC G C Q+C+N G++ CQC G+ L DG C+ ++ T V+ S +K E ++L+S ++ ++ LQ + ALEH QL I + E++ EQ S
Sbjct: 20 TEHAYRPGRRVCAVRAHGD---PVSESFVQRVYQPFLTTCD---GHRA---CSTYRTIY----RTAYRRSPGLAPARPRYACCPGWKRTSGLPGACGAAICQPPCRNGGSCVQPGRCRCPAGWRGDTCQSDVDECSARRGGCPQRCVNTAGSYWCQCWEGHSLSADG---TLCVP-KGGPPRVAPNPTGVD---SAMKEEVQRLQSRVDLLEEKLQLVLAPLHSLASQALEHGLPDPGSLLVHSFQQLGRIDSLSEQISFLEEQLGS 266 The following BLAST results are available for this feature:
BLAST of TCONS_00019271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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