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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019265 ID=TCONS_00019265|Name=TCONS_00019265|organism=Clytia hemisphaerica|type=transcript|length=2266bpRun BLAST on NCBI protein sequence of TCONS_00019265-protein >TCONS_00019265-protein ID=TCONS_00019265-protein|Name=TCONS_00019265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp MSDLSDFDDDGDEIEDPEVDAVKDEEDDDDDDEDGMKEDDIVQKPLTQEIRun BLAST on NCBI transcript from alignment at sc0000323:297315..317691+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019265 ID=TCONS_00019265|Name=TCONS_00019265|organism=Clytia hemisphaerica|type=transcript|length=20377bp|location=Sequence derived from alignment at sc0000323:297315..317691+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000323:297315..317691+ >TCONS_00019265 ID=TCONS_00019265|Name=TCONS_00019265|organism=Clytia hemisphaerica|type=CDS|length=10380bp|location=Sequence derived from alignment at sc0000323:297315..317691+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019265 vs. Swiss-Prot (Human)
Match: LRC23 (Leucine-rich repeat-containing protein 23 OS=Homo sapiens GN=LRRC23 PE=2 SV=2) HSP 1 Score: 262.307 bits (669), Expect = 8.171e-80 Identity = 134/244 (54.92%), Postives = 180/244 (73.77%), Query Frame = 1
Query: 265 PLTQEIIANEGCLSLLCKTGNGLAHAYVRLDIKDREITDISCLKVFVHLRYVDLSINSINDLSPLNFLTHLLTIKADKNRLASAKLNELPYLQILNCSENKITGCEGIAHPLLETLNLGGNQLTDLTTLNATKLARLSQLELKANKLTSTAGVHIVELKKLYLADNLITKIEDLGRLRNLMILHLRNNNLSNLDGFTDNLRQLQYLNLRKNDITSFSEVEKLKCLPMLRALILRQNPVCFEEGY 996
PLT++++ EG LSLLCKTGNGLAHAYV+L++K+R++TDI L+ ++HLRYVD+S N + DLSPLN+LTHLL +KAD NRL SA++NELPYLQI + + N+IT EGI+HP LETLNL GN + +T L+ KL L +EL+ N+L ST G+++ +LK LYLA N++ K+E L L NL LHLR+N + L GF+ ++ LQYLNLR N + + E+ KL+ LP LRAL+L NP E Y
Sbjct: 47 PLTEDMM-KEG-LSLLCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSY 288 The following BLAST results are available for this feature:
BLAST of TCONS_00019265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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