TCONS_00019265-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019265-protein
Unique NameTCONS_00019265-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019265-protein ID=TCONS_00019265-protein|Name=TCONS_00019265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MSDLSDFDDDGDEIEDPEVDAVKDEEDDDDDDEDGMKEDDIVQKPLTQEI
IANEGCLSLLCKTGNGLAHAYVRLDIKDREITDISCLKVFVHLRYVDLSI
NSINDLSPLNFLTHLLTIKADKNRLASAKLNELPYLQILNCSENKITGCE
GIAHPLLETLNLGGNQLTDLTTLNATKLARLSQLELKANKLTSTAGVHIV
ELKKLYLADNLITKIEDLGRLRNLMILHLRNNNLSNLDGFTDNLRQLQYL
NLRKNDITSFSEVEKLKCLPMLRALILRQNPVCFEEGYRVEVLVLLRRLE
RLDQDVYLEDERQEAEEVYNARQEMEYQGEGTSNHEVINSEEEDQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010816XLOC_010816Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019265TCONS_00019265Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 308..328
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 221..239
e-value: 720.0
score: 0.4
coord: 199..220
e-value: 1.4
score: 18.0
coord: 244..265
e-value: 27.0
score: 12.1
NoneNo IPR availablePFAMPF14580LRR_9coord: 205..325
e-value: 3.8E-13
score: 49.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..345
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 21..187
e-value: 9.4E-16
score: 57.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 188..333
e-value: 1.3E-24
score: 85.6
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 69..310
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 92..113
score: 8.374
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 201..222
score: 8.952
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 223..244
score: 7.358
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 246..267
score: 8.451
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 135..155
score: 5.132
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 156..177
score: 7.835

Blast
[Close]
BLAST of TCONS_00019265-protein vs. Swiss-Prot (Human)
Match: LRC23 (Leucine-rich repeat-containing protein 23 OS=Homo sapiens GN=LRRC23 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 1.983e-91
Identity = 143/266 (53.76%), Postives = 194/266 (72.93%), Query Frame = 0 
Query:   39 DDIVQKPLTQEIIANEGCLSLLCKTGNGLAHAYVRLDIKDREITDISCLKVFVHLRYVDLSINSINDLSPLNFLTHLLTIKADKNRLASAKLNELPYLQILNCSENKITGCEGIAHPLLETLNLGGNQLTDLTTLNATKLARLSQLELKANKLTSTAGVHIVELKKLYLADNLITKIEDLGRLRNLMILHLRNNNLSNLDGFTDNLRQLQYLNLRKNDITSFSEVEKLKCLPMLRALILRQNPVCFEEGYRVEVLVLLRRLERLDQ 304
            ++ +  PLT++++  EG LSLLCKTGNGLAHAYV+L++K+R++TDI  L+ ++HLRYVD+S N + DLSPLN+LTHLL +KAD NRL SA++NELPYLQI + + N+IT  EGI+HP LETLNL GN +  +T L+  KL  L  +EL+ N+L ST G+++ +LK LYLA N++ K+E L  L NL  LHLR+N +  L GF+  ++ LQYLNLR N + +  E+ KL+ LP LRAL+L  NP   E  YR E LV +  LERLD+
Sbjct:   41 EEWLPTPLTEDMM-KEG-LSLLCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDK 304
The following BLAST results are available for this feature:
BLAST of TCONS_00019265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC231.983e-9153.76Leucine-rich repeat-containing protein 23 OS=Homo ... [more]
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