|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019249 ID=TCONS_00019249|Name=TCONS_00019249|organism=Clytia hemisphaerica|type=transcript|length=1578bp
GcaatataaaaatgagaaaatctctAGTCTTTTCTGTCCTTGTACTGATC
CTTTTACTTTATGTGGATTACATGGTTTGTCAAATGAGATTTCAACTTAT
ACAAGATGGCAACGAAATAGCTGGGTTACAACCTTATCGCAAAGAAACGA
TGTCATCAAAGTCGAGATGCTATTTAATGTGTCAACAGACTCCTGGTCAA
TGCTGTTATGTGCAATTGGTTCACCAACAAGAAGATGGTCAATGGATATG
TTCTTTGTATGAATTCGTTGGTGATATCAACAAATATTTGTCACCTTCGC
CAGGATCTGTAATCTCAGCACCAAAAGCCAACCCTCAAATGGATTGTTTA
GATTGGCTTCGCCTTGGTTACACAAAAGATAGCGTCTACTACATCAATTT
TAACGGTTACCGACGGAAAGTGTTTTGCGATATGACAACAGAGGGAGGTG
GTTGGATTGTCATGCAGAAACGTTTTGATGGTTCGGAGGATTTTTATCGC
GATTGGGTGACCTACAAAGAAGGCTTTGGGAATGTTGACGGTGAATATTG
GTTGGGTAACGAATTCATTCATCAATACACCACTCGATTTTCAACAACAT
TGCGAGTTGACGCATCCGGATTTGACGGTCAAACCAACTTCATCACATTG
GATGGATTCTATCTTCAAGGGGAAGCTTCAAAATATAGAATCTATTTTAC
TGCTAACACTTGTCGCCAATCGTCATCGCCTCACAATCTGTGTTACGCTT
GGAATTTCNCAAAATATAGAATCTATTTTACTGCTAACACTTGTCGCCAA
TCGTCATCGCCTCACAATCTATGTTACGCTTGGAATTTTCATCGTGGTTT
CAAATTTTCGACCAAAGACCAAGATAATGATGATTTTTATGGATATTGTG
CCAACTTCTACCAAACTGGGTGGTGGCTCGGCCAATGTACTGTTCTTGGC
TTCAATGGGCCATATAGTGCAGATGGCGTTCTACAATATGGTAAAGTTGG
GATCCATTGGATTGGCTGGTACCCTGACACTTCTGCCTTGAAAGAAACGA
CCATGCTGAtcaggagagatccataaaaACCTTTTTCGAATATAGAGCAA
AATTAGCTTCGATAGAGCATATTgaggaaaaagatttttttcttatttac
tGTGTTGCATTTTATTGCCTTGAGCAAAGAGGTGATAGATAAATAAATAC
ATACATTAACTTTTATCTTTCATAATATCACAGAATGGTTACTTTTTCTT
GCGTACAACAACGTTTACCCAAGGCCTTAAAATATTACGTAAGCCTACCT
GAAAGCCTTATGTAAAAGTTAACGTACATctgaaaaatactttgaaagTG
GAATCTTTTGATATTGATGTACACTCATGAGAATTTTACTAAAAAACAAC
TCAATAAGCAGTACTTTTCTAGGAGAGAATTATGTGCTAATATCATGATA
ACGAGGATCTGTTTGAATCCGTTGGGCATCGTAACTATTTTGCTGAgaaa
aaacttattttaaacTTAGGCTAAGATTACTATAGACATGAAAATACTGC
CTCTATTAAAGGAGAGGAGCAAGCCTAT Run BLAST on NCBI transcript from alignment at sc0000321:47964..49541 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019249 ID=TCONS_00019249|Name=TCONS_00019249|organism=Clytia hemisphaerica|type=transcript|length=1578bp|location=Sequence derived from alignment at sc0000321:47964..49541 (Clytia hemisphaerica)
ATAGGCTTGCTCCTCTCCTTTAATAGAGGCAGTATTTTCATGTCTATAGT
AATCTTAGCCTAAgtttaaaataagttttttcTCAGCAAAATAGTTACGA
TGCCCAACGGATTCAAACAGATCCTCGTTATCATGATATTAGCACATAAT
TCTCTCCTAGAAAAGTACTGCTTATTGAGTTGTTTTTTAGTAAAATTCTC
ATGAGTGTACATCAATATCAAAAGATTCCActttcaaagtatttttcagA
TGTACGTTAACTTTTACATAAGGCTTTCAGGTAGGCTTACGTAATATTTT
AAGGCCTTGGGTAAACGTTGTTGTACGCAAGAAAAAGTAACCATTCTGTG
ATATTATGAAAGATAAAAGTTAATGTATGTATTTATTTATCTATCACCTC
TTTGCTCAAGGCAATAAAATGCAACACagtaaataagaaaaaaatctttt
tcctcAATATGCTCTATCGAAGCTAATTTTGCTCTATATTCGAAAAAGGT
ttttatggatctctcctgaTCAGCATGGTCGTTTCTTTCAAGGCAGAAGT
GTCAGGGTACCAGCCAATCCAATGGATCCCAACTTTACCATATTGTAGAA
CGCCATCTGCACTATATGGCCCATTGAAGCCAAGAACAGTACATTGGCCG
AGCCACCACCCAGTTTGGTAGAAGTTGGCACAATATCCATAAAAATCATC
ATTATCTTGGTCTTTGGTCGAAAATTTGAAACCACGATGAAAATTCCAAG
CGTAACATAGATTGTGAGGCGATGACGATTGGCGACAAGTGTTAGCAGTA
AAATAGATTCTATATTTTGNGAAATTCCAAGCGTAACACAGATTGTGAGG
CGATGACGATTGGCGACAAGTGTTAGCAGTAAAATAGATTCTATATTTTG
AAGCTTCCCCTTGAAGATAGAATCCATCCAATGTGATGAAGTTGGTTTGA
CCGTCAAATCCGGATGCGTCAACTCGCAATGTTGTTGAAAATCGAGTGGT
GTATTGATGAATGAATTCGTTACCCAACCAATATTCACCGTCAACATTCC
CAAAGCCTTCTTTGTAGGTCACCCAATCGCGATAAAAATCCTCCGAACCA
TCAAAACGTTTCTGCATGACAATCCAACCACCTCCCTCTGTTGTCATATC
GCAAAACACTTTCCGTCGGTAACCGTTAAAATTGATGTAGTAGACGCTAT
CTTTTGTGTAACCAAGGCGAAGCCAATCTAAACAATCCATTTGAGGGTTG
GCTTTTGGTGCTGAGATTACAGATCCTGGCGAAGGTGACAAATATTTGTT
GATATCACCAACGAATTCATACAAAGAACATATCCATTGACCATCTTCTT
GTTGGTGAACCAATTGCACATAACAGCATTGACCAGGAGTCTGTTGACAC
ATTAAATAGCATCTCGACTTTGATGACATCGTTTCTTTGCGATAAGGTTG
TAACCCAGCTATTTCGTTGCCATCTTGTATAAGTTGAAATCTCATTTGAC
AAACCATGTAATCCACATAAAGTAAAAGGATCAGTACAAGGACAGAAAAG
ACTagagattttctcatttttatattgC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019249-exon-sc0000321-1491911889:47964..49541 | TCONS_00019249-exon-sc0000321-1491911889:47964..49541 | Clytia hemisphaerica | exon |
| TCONS_00019249-exon-sc0000321-1510915933:47964..49541 | TCONS_00019249-exon-sc0000321-1510915933:47964..49541 | Clytia hemisphaerica | exon |
| TCONS_00019249-exon-sc0000321-1575043694:47964..49541 | TCONS_00019249-exon-sc0000321-1575043694:47964..49541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000321 | supercontig | sc0000321:47964..49541 . |
Blast
BLAST of TCONS_00019249 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.178e-34 Identity = 88/250 (35.20%), Postives = 116/250 (46.40%), Query Frame = 3
Query: 324 KANPQMDCLDWLRLGYTKDSVY--YINFNGYRRKVFCDMTTEGGGWIVMQKRFDGSEDFYRDWVTYKEGFGNVDGEYWLGNEFIHQYTTRFSTTLRVDASGFDGQTNFITLDGFYLQGEASKYRIYFTANTCRQSSSPHNLCYAWNFXKYRIYFTANTCRQSSSPHNLCYAWNFHRGFKFSTKDQDNDDFYGYCANFYQTGWWLGQCTVLGFNGPYSADGVLQYGKV-GIHWIGWYPDTSALKETTMLIR 1064
+ P DC D + G+ K +Y YIN +KVFC+M GGGW V+Q R DGS DF R W YK GFGN GEYWLGNEFI T++ LR++ ++G + D F++ E YR+Y +T +QSS G FSTKD DND+ CA GWW C NG + G +GK+ GI W + + +L+ TTM+IR
Sbjct: 279 EEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHT------------------------GTAGKQSSL---------ILHGADFSTKDADNDNCMCKCALMLTGGWWFDACGPSNLNGMFYTAGQ-NHGKLNGIKWHYFKGPSYSLRSTTMMIR 494
The following BLAST results are available for this feature:
|
