TCONS_00019227 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019227
Unique Name	TCONS_00019227
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	315

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000321:314841..322444+

transcript sequence

>TCONS_00019227 ID=TCONS_00019227|Name=TCONS_00019227|organism=Clytia hemisphaerica|type=transcript|length=315bp
TCCACGCATACATCCAGAAGTAAAGGGAGTTTGTAGGATCACACCGTTTC
CCACGATAAAACAGGATCGCCTTAACTTTTTGGTGATATATTGATAGCAC
GCTCCACCGActctcaaaacattcgaaaatgtaATGAACATAACTAACAT
TGAATAGAAAACTTGTGAAGTTGTGTTTTTCCTAAACCAATTTGTTGAAT
GAACAGATTTTGTAGCTTTACAAAGAAAAACCAATGTCGTAAGGAAAGTG
ATTATGGCAAGAATACCAACAAAGGTATCCTTTACAAGTAGAAGCAATGA
AAATGAAGTGATATA

Run BLAST on NCBI

transcript from alignment at sc0000321:314841..322444+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019227 ID=TCONS_00019227|Name=TCONS_00019227|organism=Clytia hemisphaerica|type=transcript|length=7604bp|location=Sequence derived from alignment at sc0000321:314841..322444+ (Clytia hemisphaerica)
TCCACGCATACATCCAGAAGTAAAGGGAGTTTGTAGGATCACACCGTTTC
CCACGATAAAACAGGATCGCCTTAACTTTTTGGTGATATATTGATAGCAC
GCTCCACCGActctcaaaacattcgaaaatgtaATGAACATAACTAACAT
TGAATAGAAGACTTGTGAGATTGTGATTGTCCTGAACCAAAGTCCAAAAG
TGACAGCTTTTCTGTCTTTAATGAGGTAAATCGAACTTGTAAAGAAAGTG
ATTATGGCGAGAATACCAACAAAGGTGTCCTTTACAAGTAGAAGCAATGA
AAATGAAGTGATATATTTCTCAATGTAGAAATACTCCAAAATCAACTCAG
GGCCATCTTCAAACATAAAACTTGCCATCATGACCATATTTTTCAtctga
agaaattttatttcagaATACTtataatttctgtaattttctGTGATAAC
TTGGAAAAATTTCCAAGTAAATACTTTACAAATACATCCAAGTATGGCAA
AACCATATATCAAGTTGTTGACCTTTGCGTTTCGGTAGATTACCGGATCG
AGAACTTCTCCTTTTTCCAGTTGATAGAAAATGTAAAGATCTAATGTCAA
ATCAATTGCATCCCAAAAATATCTGAATAGTGCCATAAGAACAATTGAAA
CGTATAACTTTGCATTCAAAAGTTGATACTTGTAACGAATACAACATGGA
AAACCACAGAAAACATTTTCACTCATTTCAAAGTGAGTTTTGTCCAATAT
TTCATATCTCCTGTACCCTCCTGttaaatattttagattttcttcaGTCC
TCCATGTTTTAAATTTCACCAACGTTTCATACACAGTTTTGATGAAAGCA
AACAAAACAATCCAATAAATTGCGATGGGTATGATAGTCATTGCGAGCAA
AGTGTGATCACGaaaaccaggggggggggtacatccgcagggtactaacc
catagggtactaacctgatttttaagaaaaattggcttaggtaccaccac
cccctttttggacctaccccggtgggctgtaggtcctataaattaacctc
tgttcgttcgttcgtctgttcgtccgttcgtccgttcgtccgttcgttac
tagcttttctcgggattggctcattagtttttcctaatttttggcacaaa
gatgcaaaatggtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATCCACAAAAAGTCGAGTTTCCAATAGCAATTGGGAGTTGGTGGCAATAT
GTTCTGTCGTTTATTGTTTGGTTGATATTCTTTTCCATTTCAATACTAAC
AATTGGATAAGATTTAAGACTGATCCTAGATGTATGTTTTTCAATCAGAC
CAAAATAATGTTTACTATaagtaaaaagtatgtaaaatATATAGAAAATG
TATAAGGGAAGGCAGCAATCTGTCTGCTTAACCTATCATGATTAAATCCA
TTCGCTTTAGACTTTCAAATATCTTTCTTTATTTATGCCAAATATAGTGA
GACCCTCCACCTCTTTTCCGAAAATTGCCAGGTGCTAGCTTTACAtattg
ccaaattttcaaaattttgtttttccaaggttttcaGAATTTTATGTTCG
ATTTTCACTTTATCCAGCTTTATccatgaagaaatttttgtgccttttta
ttttctattccgcatttttgtcaagatgtagtagcTTTTGCTAGCTTCTt
caaattctcgaaattttggtagtttttccaaggttttcaGAATTTTATGT
TCGATTTTCACTTTAtcaatgaagaaatttttgtgtctttttggacctac
cccggtggaggtcctataaattaacctatgtttgttcgtccgtccgttcg
ttcgttcgtccgttcgtctgttaccaacttttctcaggaaatcataggaa
tcttttgatttttggtataaaggtgcaaaatggtggtggccaaaatgtga
cggagcccgattttcgaaaaaaaagtttggggggcaaatttgggccaaaa
aacggctaaaaaacgggttttttggactttgtgaaaaattggattattaa
ttttttctgattttttgcatgaaagtgggtaaaagatggctcaagcagat
ttttgcaaaaaaaatttgttggctcaaaaaaaggatgtttatctataaga
atcgctattaataagcatacgtcaatgttcttagccaaattattcaattt
tttgatgagataaatgtttttttttgctcacgaagtcttgaatatgaaag
aatatttcaagagcatgaaattttggtttctaaacgtttttatttttgta
agaaacaaacgactatctttaatagatcgtcactatttgtgttctgaatg
attgtttaatggtcacgtcacgtagatatcaattataaatgtgttaaatg
cataaccaaaggtaggtccataaaagtatcacttgttattttCTATtccg
catttttgtcaagatgtagtagtttttgctacCTATTTAtgagattttat
aggtgaaattctacttttatttttattttttggccgaccgaccgaccctc
ttatTTTGGTAGCTTgtaaaacctgaaattaatttgGCCTCGCCTACAGA
GCCTCTAGGAGGCAGCTAGtagtgtacacgttttttttttataagaacaa
actatacaagaacataaggcttcgaggcccaaaaatttaagaacattcta
agaacatactaaggctttggagacttaaaaacatgcaatttcttaataaa
ttacatcaaaatgctcaaaaaatgctgaaaataagaacattttaagaaca
tttttaggcttcaaatccaaaaaactaagaacatccgaaggcttcgaaaa
tttttgacgttcttataaaaaaaaaacgtgtagttttactgtttttcttt
ttacttctACTGGCCACTTCCCCCCACCCGATGGATAACGCTGTAACTTT
CGACACTTTTAATATAAATAtactatataaaaaatattaatgatgttatt
agctaaaaaaataagaatttgctaagaatatcaccatcatagaatttaaa
taccattcttattaaaaaaaggcgTGTATTCTATGTAAAAAATATTATGC
ACATGAAAGTATCATCATTATCAATCTCACACCGTTTACACTACCATTTC
TAAAGCCAGGTAAACACTTCCTTCTCAATCAAGAAAAATGCGAAAAATGA
AATAAGTTTACACACATACTTAAAAACTAAtagcaatcaaaacaaaaact
catTATTATCTTTGTAGAGATTGAAGTTTGAATCAAAAGTGATCGCACAA
TGGTTATCTTCGAGTAAAATCTCATTATTTAAGTATTACACCTATccgca
gacacgtgtttcgtcCTTCTCAAGGACTCATAAAGTTTTAAAGTATTTAG
CAAGAactaaaaatgaattttcttaattttattttattctaactctattc
atactaggcttttagaggcggttcaaaactagggggaGGCTGTTCCTGTA
CCACCCTTACTTTTTGATCTGGTgcgtctttttggatgaaatttggcaca
ttaGACCCTTATCAtttaaggtaacttttgacaaaaaattgttttgatga
cgtcactcatcatgcccaaagtgagcaaaaactgaaaatttcttttgttc
ttttgaatagctattgtattcgaacaaaggctttagaaaaaagttctcTG
AGTCTAAAATGcctattttatcctaaatatttaaTAACAAATTACGGTTT
gaaaacgatatatttgacatgaaaaataaatttgtattgaaaAGGTGAAC
ACTAAACtgcactttcaaaacaaacacgaGCACCCTTTAAATCATTTAAA
GTTGAAATGGGTAGTTTCAAAGATATAGCATTGACGGTGGAAAGTTTCTT
TTCTGGTTGTTTCTTGCACGCTGTTGTTACACACGCCATATACCAGCGTT
TCCTGCACGCTTCTATACAATTCAGGTGTTTGAATATCTTCGATAGTTTC
TCGAAAAATGTTAAGATTTGTTTTCCCGCACGACAAAAGAAACTAAACAT
TAGTCCACCGTGAATATCGATCAGTTGTAAGAAGTATGGTCTATTCAAGA
TATGAGCAGCTCCTGAAGAGCTCTCTTCATATTTTCCATCTGAATGTAGC
CAAAGACAACTCAAGAATAAGTTCATCAAAAAAGCATAAACGAAAAACAT
CAATGGTATTCCAGCCATAAGAATGATGACGTAATCAATTCCACGCATAC
ATCCAGAAGTAAAAGGAGTTTGTAAGATCATACCATTTTCAATCACAAAA
CAGGATCGCTTTAACTTTTTTGTGACATATTGATAGCACGCTCCACCGAC
TctcaaaacgttcgaaaatgtaAAAGACATAACTAACATTGAATAGAAAA
CTTGTGAAGTTGTGTTTTTCCTAAACCAATTTGTTGAATGAACAGATTTT
GTAGCTTTACAAAGAAAAACCAATGTCGTAAGGAAAGTGATTATGGCAAG
AATACCAACAAAGGTATCCTTTACAAGTAGAAGCAATGAAAATGAAGTGA
TATA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010793	XLOC_010793	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019227-exon-sc0000321-1491911889:314841..314979	TCONS_00019227-exon-sc0000321-1491911889:314841..314979	Clytia hemisphaerica	exon
TCONS_00019227-exon-sc0000321-1510915933:314841..314979	TCONS_00019227-exon-sc0000321-1510915933:314841..314979	Clytia hemisphaerica	exon
TCONS_00019227-exon-sc0000321-1575043694:314841..314979	TCONS_00019227-exon-sc0000321-1575043694:314841..314979	Clytia hemisphaerica	exon
TCONS_00019227-exon-sc0000321-1491911889:322269..322444	TCONS_00019227-exon-sc0000321-1491911889:322269..322444	Clytia hemisphaerica	exon
TCONS_00019227-exon-sc0000321-1510915933:322269..322444	TCONS_00019227-exon-sc0000321-1510915933:322269..322444	Clytia hemisphaerica	exon
TCONS_00019227-exon-sc0000321-1575043694:322269..322444	TCONS_00019227-exon-sc0000321-1575043694:322269..322444	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000321	supercontig	sc0000321:314841..322444 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.326305	0.757743	0.741333	1.805	2.49609	1.72082	0.402752	0.845928	2.44491	5.76321	0.891414	10.237	7.16453	5.13019	14.0696	0	4.37696	0.711412	1.48888	0.647055	0.473416	0.383666	0	0	0.320635	0	0	0.742799	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00019227 vs. Swiss-Prot (Human)

BLAST of TCONS_00019227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00019227 (transcript) - C. hemisphaerica