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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019224 ID=TCONS_00019224|Name=TCONS_00019224|organism=Clytia hemisphaerica|type=transcript|length=3288bp
gccattTTATCAATTCATACGCTATATATTTGGAATTCCGGCTATTTTGA
TTAGCCAGACTTTTTATTGGGTTGTTTTCATACACATTAGTATTAAGGTT
TTTTACCTTAGATGTTTTCTTGCATTTTTTCTGTACTTTAAGCCTGATTT
AAATCCTTTGTgtcaaatattcaatttttattggATTGACATAGTACGAG
CGATTGCTTTCATTTAACGAAACCTTGACACTAATCTACTTCCAttttaa
ttgaattttcagaatctagaatagagaaaaaaaagacaaaaaaattctGT
TATAAAACATCAAACAAACGACTCAAGAATCTTATCACAAACATTCGCGA
GCTCTCTGGAAGGAGCAGTGATGCTGCCTAACGTTATCAAACTTACCTTT
GCCCTTACCTTCTTTTTGGTTGGCACGGGAGGCGCACGACAGCGTGAACG
ATGCGTACCGCTTATTAACGACCATTGTAAAGATCTTGGATACAACGCTA
CTTTGATTCCGAACGTTAAAGCTGGGATTGATAAACTGGATGAAGCTGCT
AGGAGAATCAGTGAATTTTCACCGTTATTTCAAGTGAATTGTtacgaaaa
tttcaagttttttattTGCAACATGTTTCTACCGGTTTGTCATTCGATTA
ATGGAAACCCGACCCCCGTCTATCCATGTCGTCATGTTTGTGAGGAGGCG
AGAAAAGGTTGTGAACCTCTGATGAAGAAATATAGTTTCACATGGCCCGA
TGTTTTGAATTGCGAATTCCTGGCTAGTAACACGAAACAAAACGCCCTAT
GTGGTAGTCCACCGCCTTCCAAGCCCACCCGCAAAACGCCACAAACTGAA
GTTGTACCCACTGCCCCACCAGCATGGGTCAAAGTGGTTGAACAATTTCC
AAAAGGTATAGACGTTAAAGTGTTACAAAGTAAAGAGAATCTAGCCTTGA
TCAGCACTTTATTCAAAACCGATCGAGTGACTTTTAAATCGGTTTGTAAG
TTACTACCTAACTcgatttatttgaaaaaaactgaGAGTGAAACCTGTGT
ATCAAAGTGCGAGGCAACTTCGCCATTCACAAAAGAGAACAAGAAATTCG
CTTCAGTATGGGTGTCAACTTGGTCCATCATTTGTTTCCTCTCAACTCTG
GTCACCGTAACGACTTTCTTAGTCGATCACAAACGTTTCAAGTATCCTGA
ACGACCTATCATTTTCCTATCCTTCTGTTACAACTTATACTCGATTGGAT
ACCTCATCCGGGTTTTTGGCAACTACGAAAACATCGTATGTGAGAACTCA
CCGCAAGGTCAACACGCTTTGATAGATGGGATGTCGTCTACATCGTGCGC
CATTGTTTTCTTCCTTCTCTATTTCTTTGGAATGGCATCTGCTTTGTGGT
GGGTTGTCTTATCAGTTACCTGGTTTCTAGCTGCCGCTCTCAAGTGGGGA
CACGAAGCGATCGAAAAGTATTCGTCACTTTTCCACGCGGTCGCCTGGAC
TGTACCGACTATACAAACTATTATCGCGCTGGTGACTCGTAAAGTAGACA
CTGATATGTTGGCAGGTGTTTGTTATATAGGAGCAACCAACAGTGAGAAT
TTATTAATGTTTGTGGCGTTACCGTTGCTTATCTATTTACTCATCGGAAC
ACTTTTTCTCATCATGGGATTTGTGGCTTTGATCAAGATCCGGAAAGAAC
TGCAACGAGAACGTAACACGAACAAATTGGAACGTTTGATCATTCGAATC
GGCATTTTCTCCGTCCTCTACTCCGTACCCGCCTCAATCGTGGTCGGATG
TTTTATACACGAGTATAACCGATTGAAACGTACCGAGCAAGTGTCACAAG
ACATGTTATCTTGTCTTAAAGATCCAAATTGTGAAAAGGATTTGAAACCG
CGCACCGAGATTTTCTACTTACGTTATTTCATGTTGTTGGTTGTCGGTGT
AACAAGCGGTGTGTGGATTTGGACATCCAAGACATTCGATTCGTGGAAGA
ATTTCTACCGACGACGTTTTCCTGAGAAATCGAGTAAACAAGAAGAGGAA
AAGGAACgtctttataagaactcttttgCACCAACCACTTCCAATCTCCA
ATCTGCCCATGCTCCGCCACGCAGAAGATCCTCAAACGAAGCCTTAAATC
AATACACGCCCGCCAGTACGGTTGCTTCACACCCCGCTATCGCCATCCAA
CCAGGAATGTACGCACAGCCTGcaactaatttcttttttcctatCCAGCA
ACATCCGGCCGTCATGCAAGCACACAATCTACCCGTATCACAAGCTAAAA
TTGTTGATTCAAGTTCGCGCGGTTTTACAGTCACACCTTCGTCAAATATG
ACATCAGATTATGAACATAACGAAGTATttaataattatgaaaacaaact
tATTCAAAATGGACATGATATGATGCATAGACAAGCAAACTATGCTCCAA
GTAGCTCTTCAGAGCATTATACTGCTAGTCTACCTCGTAATGGTCGACCA
TTGGACCCTCCGGCTTCGCCGAAAAGTATGTCCAGTCGTTCGCATTACTC
GAACGAAGccaaaatgtgaaaatatttagggtTAGTTTCATATTTCTATT
AGCTAACAAATTGTGTACaaattattttggttgccaGTGCTTTGAACGTC
ACTCTAAGACTTTTTTTAGACCTTATATAGTAGGAGCCCTGTTTTGTTTA
AAACGTTGCGAGAATTCTATCCTGCACAAAGATATATCATATTTTCGTGT
TAAGGGACATATCCATGATTTGTTATTTTAATTCTGTCTTTTGAGAACGA
AAATCTTAATTTAATTTGGATGTATCGAAAGGCGCCTTCAAAATCTTGAC
AAGCTTAAAAGTCAATCTCGAATTGATGATGAAGCACTTTTATAGAAAGA
TctattttttaaaggaaaaccTACGAAGGTAGTTCTAGAAAATTGATGAC
ATCTTTTATGATgtacaagaaaatatttttgtgcgcttttattttcattg
tatttattattgttaaaagaaaaataaaccatgTTTTTAACCTGCTtcgc
taaaatattaagaaaatattagttatttagtaaaaaaatcaataattgta
tgattttaaaatttcaaactaaaaaCGAGATAAAAAAGGCACTTTAGATA
AATTTTAAGTGCTATTTTTACCCATATATTTTTACCTTCTTATTCTACTT
tttgttaataatttttttcatttagctatttgtatattttattgtttacc
AGCTGAAAgataaatgaattttaatttttcaaaaaata Run BLAST on NCBI transcript from alignment at sc0000321:274156..277443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019224 ID=TCONS_00019224|Name=TCONS_00019224|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at sc0000321:274156..277443+ (Clytia hemisphaerica)
gccattTTATCAATTCATACGCTATATATTTGGAATTCCGGCTATTTTGA
TTAGCCAGACTTTTTATTGGGTTGTTTTCATACACATTAGTATTAAGGTT
TTTTACCTTAGATGTTTTCTTGCATTTTTTCTGTACTTTAAGCCTGATTT
AAATCCTTTGTgtcaaatattcaatttttattggATTGACATAGTACGAG
CGATTGCTTTCATTTAACGAAACCTTGACACTAATCTACTTCCAttttaa
ttgaattttcagaatctagaatagagaaaaaaaagacaaaaaaattctGT
TATAAAACATCAAACAAACGACTCAAGAATCTTATCACAAACATTCGCGA
GCTCTCTGGAAGGAGCAGTGATGCTGCCTAACGTTATCAAACTTACCTTT
GCCCTTACCTTCTTTTTGGTTGGCACGGGAGGCGCACGACAGCGTGAACG
ATGCGTACCGCTTATTAACGACCATTGTAAAGATCTTGGATACAACGCTA
CTTTGATTCCGAACGTTAAAGCTGGGATTGATAAACTGGATGAAGCTGCT
AGGAGAATCAGTGAATTTTCACCGTTATTTCAAGTGAATTGTtacgaaaa
tttcaagttttttattTGCAACATGTTTCTACCGGTTTGTCATTCGATTA
ATGGAAACCCGACCCCCGTCTATCCATGTCGTCATGTTTGTGAGGAGGCG
AGAAAAGGTTGTGAACCTCTGATGAAGAAATATAGTTTCACATGGCCCGA
TGTTTTGAATTGCGAATTCCTGGCTAGTAACACGAAACAAAACGCCCTAT
GTGGTAGTCCACCGCCTTCCAAGCCCACCCGCAAAACGCCACAAACTGAA
GTTGTACCCACTGCCCCACCAGCATGGGTCAAAGTGGTTGAACAATTTCC
AAAAGGTATAGACGTTAAAGTGTTACAAAGTAAAGAGAATCTAGCCTTGA
TCAGCACTTTATTCAAAACCGATCGAGTGACTTTTAAATCGGTTTGTAAG
TTACTACCTAACTcgatttatttgaaaaaaactgaGAGTGAAACCTGTGT
ATCAAAGTGCGAGGCAACTTCGCCATTCACAAAAGAGAACAAGAAATTCG
CTTCAGTATGGGTGTCAACTTGGTCCATCATTTGTTTCCTCTCAACTCTG
GTCACCGTAACGACTTTCTTAGTCGATCACAAACGTTTCAAGTATCCTGA
ACGACCTATCATTTTCCTATCCTTCTGTTACAACTTATACTCGATTGGAT
ACCTCATCCGGGTTTTTGGCAACTACGAAAACATCGTATGTGAGAACTCA
CCGCAAGGTCAACACGCTTTGATAGATGGGATGTCGTCTACATCGTGCGC
CATTGTTTTCTTCCTTCTCTATTTCTTTGGAATGGCATCTGCTTTGTGGT
GGGTTGTCTTATCAGTTACCTGGTTTCTAGCTGCCGCTCTCAAGTGGGGA
CACGAAGCGATCGAAAAGTATTCGTCACTTTTCCACGCGGTCGCCTGGAC
TGTACCGACTATACAAACTATTATCGCGCTGGTGACTCGTAAAGTAGACA
CTGATATGTTGGCAGGTGTTTGTTATATAGGAGCAACCAACAGTGAGAAT
TTATTAATGTTTGTGGCGTTACCGTTGCTTATCTATTTACTCATCGGAAC
ACTTTTTCTCATCATGGGATTTGTGGCTTTGATCAAGATCCGGAAAGAAC
TGCAACGAGAACGTAACACGAACAAATTGGAACGTTTGATCATTCGAATC
GGCATTTTCTCCGTCCTCTACTCCGTACCCGCCTCAATCGTGGTCGGATG
TTTTATACACGAGTATAACCGATTGAAACGTACCGAGCAAGTGTCACAAG
ACATGTTATCTTGTCTTAAAGATCCAAATTGTGAAAAGGATTTGAAACCG
CGCACCGAGATTTTCTACTTACGTTATTTCATGTTGTTGGTTGTCGGTGT
AACAAGCGGTGTGTGGATTTGGACATCCAAGACATTCGATTCGTGGAAGA
ATTTCTACCGACGACGTTTTCCTGAGAAATCGAGTAAACAAGAAGAGGAA
AAGGAACgtctttataagaactcttttgCACCAACCACTTCCAATCTCCA
ATCTGCCCATGCTCCGCCACGCAGAAGATCCTCAAACGAAGCCTTAAATC
AATACACGCCCGCCAGTACGGTTGCTTCACACCCCGCTATCGCCATCCAA
CCAGGAATGTACGCACAGCCTGcaactaatttcttttttcctatCCAGCA
ACATCCGGCCGTCATGCAAGCACACAATCTACCCGTATCACAAGCTAAAA
TTGTTGATTCAAGTTCGCGCGGTTTTACAGTCACACCTTCGTCAAATATG
ACATCAGATTATGAACATAACGAAGTATttaataattatgaaaacaaact
tATTCAAAATGGACATGATATGATGCATAGACAAGCAAACTATGCTCCAA
GTAGCTCTTCAGAGCATTATACTGCTAGTCTACCTCGTAATGGTCGACCA
TTGGACCCTCCGGCTTCGCCGAAAAGTATGTCCAGTCGTTCGCATTACTC
GAACGAAGccaaaatgtgaaaatatttagggtTAGTTTCATATTTCTATT
AGCTAACAAATTGTGTACaaattattttggttgccaGTGCTTTGAACGTC
ACTCTAAGACTTTTTTTAGACCTTATATAGTAGGAGCCCTGTTTTGTTTA
AAACGTTGCGAGAATTCTATCCTGCACAAAGATATATCATATTTTCGTGT
TAAGGGACATATCCATGATTTGTTATTTTAATTCTGTCTTTTGAGAACGA
AAATCTTAATTTAATTTGGATGTATCGAAAGGCGCCTTCAAAATCTTGAC
AAGCTTAAAAGTCAATCTCGAATTGATGATGAAGCACTTTTATAGAAAGA
TctattttttaaaggaaaaccTACGAAGGTAGTTCTAGAAAATTGATGAC
ATCTTTTATGATgtacaagaaaatatttttgtgcgcttttattttcattg
tatttattattgttaaaagaaaaataaaccatgTTTTTAACCTGCTtcgc
taaaatattaagaaaatattagttatttagtaaaaaaatcaataattgta
tgattttaaaatttcaaactaaaaaCGAGATAAAAAAGGCACTTTAGATA
AATTTTAAGTGCTATTTTTACCCATATATTTTTACCTTCTTATTCTACTT
tttgttaataatttttttcatttagctatttgtatattttattgtttacc
AGCTGAAAgataaatgaattttaatttttcaaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019224-exon-sc0000321-1491911889:274156..277443 | TCONS_00019224-exon-sc0000321-1491911889:274156..277443 | Clytia hemisphaerica | exon |
| TCONS_00019224-exon-sc0000321-1510915933:274156..277443 | TCONS_00019224-exon-sc0000321-1510915933:274156..277443 | Clytia hemisphaerica | exon |
| TCONS_00019224-exon-sc0000321-1575043694:274156..277443 | TCONS_00019224-exon-sc0000321-1575043694:274156..277443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000321 | supercontig | sc0000321:274156..277443 + |
Blast
BLAST of TCONS_00019224 vs. Swiss-Prot (Human)
Match: FZD10 (Frizzled-10 OS=Homo sapiens GN=FZD10 PE=1 SV=1) HSP 1 Score: 370.933 bits (951), Expect = 1.098e-114 Identity = 215/531 (40.49%), Postives = 312/531 (58.76%), Query Frame = 2
Query: 449 RCVPLINDHCKDLGYNATLIPNVKAGIDKLDEAARRISEFSPLFQVNCYENFKFFICNMFLPVCHSINGNPTPVYPCRHVCEEARKGCEPLMKKYSFTWPDVLNCEFLASNTKQNALCGXXXXXXXXXXXXQTEVVPTAPPAWVKVVEQFPKGIDVKVLQSKENLALISTLFKTDRVTFKSVCKLLPNSIYLKKTESETCVSKCEATSPFTKENKKFASVWVSTWSIICXXXXXXXXXXXXXDHKRFKYPERPIIFLSFCYNLYSIGYLIRVFGNYENIVCENSPQGQHALIDGMSSTSCAIVFFLLYFFGMASALWWVVLSVTWFLAAALKWGHEAIEKYSSLFHAVAWTVPTIQTIIALVTRKVDTDMLAGVCYIGATNSENLLMFVAXXXXXXXXXXXXXXXMGFVALIKIRKELQR-ERNTNKLERLIIRIGIFSVLYSVPASIVVGCFIHE------------YNRLKRTEQVSQDMLSCLKDPNCEKDLKPRTEIFYLRYFMLLVVGVTSGVWIWTSKTFDSWKN 2002
+C P+ CKD+GYN T +PN+ G + EAA ++ EF+PL + C+ + +FF+C+++ P+C P P CR +CE+AR C P+M++++F WPD L+C L + N LC E + FP + S + L D + C +++K+ S + +++E+K+FA VW++ W+++CF S+ TV TFL+D RF+YPERPIIFLS CY +YS+GYLIR+F E+I C+ + + +G+ ST C +VF +LY+FGMAS+LWWVVL++TWFLAA KWGHEAIE SS FH AW +P ++TI+ LV R+V D L GVCY+G+ + L FV +PL YL+IGT F++ GFVAL IR+ ++ NT+KLE+L++RIG+FSVLY+VPA+ V+ C+ +E ++ K Q L CL + P EIF ++ FMLLVVG+TSG+WIWTSKT SW+
Sbjct: 33 KCQPIEIPMCKDIGYNMTRMPNL-MGHENQREAAIQLHEFAPLVEYGCHGHLRFFLCSLYAPMCTEQVSTPIPA--CRVMCEQARLKCSPIMEQFNFKWPDSLDCRKLPNKNDPNYLC--------------MEAPNNGSDEPTRGSGLFPPLFRPQRPHSAQEHPL------KDGGPGRGGCDNPGKFHHVEKSASCAPLCTPGVDVYWSREDKRFAVVWLAIWAVLCFFSSAFTVLTFLIDPARFRYPERPIIFLSMCYCVYSVGYLIRLFAGAESIACDRDSGQLYVIQEGLESTGCTLVFLVLYYFGMASSLWWVVLTLTWFLAAGKKWGHEAIEANSSYFHLAAWAIPAVKTILILVMRRVAGDELTGVCYVGSMDVNALTGFVLIPLACYLVIGTSFILSGFVALFHIRRVMKTGGENTDKLEKLMVRIGLFSVLYTVPATCVIACYFYERLNMDYWKILAAQHKCKMNNQTKT--LDCLMAASI-----PAVEIFMVKIFMLLVVGITSGMWIWTSKTLQSWQQ 533
The following BLAST results are available for this feature:
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