TCONS_00019168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019168
Unique NameTCONS_00019168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019168 ID=TCONS_00019168|Name=TCONS_00019168|organism=Clytia hemisphaerica|type=transcript|length=3213bp
atagatctttttcttttttcaggctGCAAAATATTATACAAAGCTgatca
taaaaaataatctcagggaaattttccaatttacTCCCATATCTTATGGT
TAACACTCCTTGAATACACAAAAGTGATTACAAACATGTCAGAAACATAT
GattattTGTTTAAATTCTTGATTATTGGAAGTGCAGGAGTTGGAAAGTC
ATGTATTTTACATCAATTCATGGAAAGTAAATTCAAACAAGATGCACACC
ATACAATAGGCGTGGAGTTTGGATCAAAAGTAGTTAACATTGCAGGAAAA
TCCATCAAATTACAAATCTGGGATACGGCAGGACAAGAAAGATTcagATC
AGTCACAAGGAGCTATTATAGAGGTGCAGCTGGTGCTCTACTGGTCTATG
ACATTACAAGTCGGGAAACATACAACAATTTGACGTCATGGTTGACAGAT
GCACGCACGCTGGCCAGTCCAAATATCGTCATCATTTTGCTTGGGAATAA
GAAGGACTTGGATGCTGATAGGGAAGTCACCTTTTTGGAAGCCAGCAGGT
TCGCACAAGAAAATGaattGATGTTTTTAGAGACGAGTGCAATGTCCGGA
GAAAATGTAGAAGAAGCATTTCTGAAATGTTCCAGgactattttgaccaa
aatcgATGCAGgtGAGTTGGACCCTGAAAGAATGGGTTCGGGAATTCAAT
ATGGTAATACGTCACTTCGGAAAACTACACAACAGAAACCAGAAGGAGAA
AAATGTGATTGCTAGTCTTAAGTGTTTTGATTTCTAGAGTGTCTTCTTCA
GAAGTGTTTTACTGAATCAACGAGCTTAATGCTAGTTAAGACCACGTATC
ATTGATTTTTAACAATGGGTGTACACCATATTTCACTCATTTTAAAATTG
TAGGCTTTTGACTAACCTGGTCATACCATACCTTTgcattttttatttgt
aaatgAATTTTAACCATTGATCGCGAGCTTGTTTGTCTCTATGTTAAAAA
CGATATTTTTGCGAGTGTTAGTAACAGCTTTTTTGTACGCGAGTGACCTT
TTGTTCGAACCCTCCGCTCCTCGAATTTCGGGGTTTGTATGTTCTgggtg
tttttattaataatattttgattataagatagaatttaatcataaaaaag
aattgaaaatctTGTATAttatatttggaaaatttagaGTCCTTAGACCT
AGCTTTTTATACGTTTCTGTTAAAAATCTcgttcattttaattttttagt
ttttcatttgttttttttttcagttgcttttctttttgtttgcattttta
aTTCACGGGTCACTAACCATCATATTAAGTTTTTGCGGCTCTCCTGTTTT
GTGCTTAACTTAAgctgttgaaaaatttcaactaaATCCATTTCATAAGG
AACTTTCAACTACATTTAATAACCACTACTTTAATAAGTCAACCACCTAG
ATATACGTATTTTAAATCTTCTTTCTGGAAGTGTGTAATACATAAATTGT
AGAATTTAGCAATTTATTATTCAgggcattttatttttaatatatttttg
agtTATTGTTTTATTCCATACAACAACGCAAATGACAAGTCCGAAATGGA
CCAAAATGTTTCCTCGGTAATGCTGTCTTATTTTGGTTTGGGATCATTTT
CCAGGAGATACGCATGTAGCAGCCTGTAGTTAAGTGATTATTAGCTATTG
TTAGCTTTCTATCCTTTTAGGGTAAATTTTGGAGTAAACGTCACATTTTT
GGTGTGGTTTTTTTTTGCCATCCTAACATGgtgaaaatttggctgaataT
TCTTTCGACAAAGTTTCCTCATACTCTTATATAAATTTGTGTTTTCCAga
actaaaagaaaaaacaaaaaaatataagagGGAATCAATATGAAAGCATT
CGATCAAGAAACCTTCGAGAATATTTTGTCATCCAAAGGAGTGAAGATAG
CGGATTACGTTCAAAAACGCGATGCTGAAGACGAAGATCTCATCTTGAGA
CCATTGGAGGTCAATGACCACACCAAAGGCTACTTGGAATTGATCTTTGA
TGACGTAGAAACTGCTGATAACAATGAACGAGAAAGAGTTTTCGAAGAGT
ATTTATCACTACAAGACACGTGTCCCGGAACTTATTACACTATCGTCGTT
GAGGATTTGAATCGAAACAAAATCATCGCCAGTGGAACACTCATCGTGGA
GCAGAAATTTATTCATGAAATTGCTCTGAGAGGACGAATCGAAAATATGA
TCGTCGATCAAGAGCACAGGAGAAGGAAGATCGGTTCCGTTGTTTTAGGA
TTATTGACATTCTTAGCAGAGAAGCTTGGCTGTTACAAAACGACGCTGAA
CTGCACAGACGACGTGGCATTGTTTTGTGAAAAGATGAAATATATGCACG
AGGCTGGACAGAATTTTATGCTATGTCATGTAACACCCACTGTCATCAAC
CCTGATCACGAAAATACGTCTCGTCTATAAATAGCTGAcaaataaacact
tttttaagatCGATGTTCGATTctatgttttaaaatggtgaAGATTCAAT
CTTTGGATCACCacagtaaaaataattactGAATTCTGTGTGTTTCAATA
TGCCATTATTAGAATGGACTCTTGACAACAGTTAGATGAATCTTTTTGTT
CGATTAAGAGATTGAATTAAAGGAtcttaaattgaaaatattagagccgg
ctttcaaaattttgttaaactgaatttttttctgcaactttaaAGTGATT
GTGAATTTGGGTTTTCATCACAACCTTTCCTTTAGTTTGAAAACTTCAGC
TCCTCGTTGAGAAAATCAATTCATTTTGTTTGAAGAAATGAATTCTTGAA
GTTTGCatgaaatttacaaaaaatctttcttatatttttttttcgatttt
tgacgcATATTTTCTATAATCTTGTAAATACTCAGTGACTATTTGGGTTC
AATTtatttaagagcatttttaaatTTACATAAAATAGTGTAGAGTTAAA
TCATTTGAGTGACGAGAGGTTGATGATATGTGCTTCCTTGGTTCTATGGC
TGCTGATTTAGATATTTCCTTAAATATAACTTAAATCTTATGTAGTTTCC
ATTTTTTCGGATTATTTTGATATCTACCAAAGAATCGCATTcttgacacc
cctgtctctcgGTGGAATTTTTCCCACGGcgaggataaatttttttattg
aaattcaaatgga
Run BLAST on NCBI

protein sequence of TCONS_00019168-protein

>TCONS_00019168-protein ID=TCONS_00019168-protein|Name=TCONS_00019168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MSETYDYLFKFLIIGSAGVGKSCILHQFMESKFKQDAHHTIGVEFGSKVV
NIAGKSIKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNNLT
SWLTDARTLASPNIVIILLGNKKDLDADREVTFLEASRFAQENELMFLET
SAMSGENVEEAFLKCSRTILTKIDAGELDPERMGSGIQYGNTSLRKTTQQ
KPEGEKCDC
Run BLAST on NCBI

transcript from alignment at sc0000320:227698..238147+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019168 ID=TCONS_00019168|Name=TCONS_00019168|organism=Clytia hemisphaerica|type=transcript|length=10450bp|location=Sequence derived from alignment at sc0000320:227698..238147+ (Clytia hemisphaerica)
atagatctttttcttttttcaggctGCAAAATATTATACAAAGCTgatca
taaaaaataatctcagggaaattttccaatttacTCCCATATCTTATGGT
TAACACTCCTTGAATACACAAAAGTGATTACAAACATGTCAGAAACATAT
GGTATGATAAGTATTGTcatttatttcataaaatttcagaCTTAGTAAAT
AATTATTCTTAACTAAGACTTAAATAAactcaaagatttaaaaaaattga
tataattaTGTTTCTGTTAAAATAAAACTGTTTGACTTGCAAACTTTGTG
ACAAAAAAGGGTTTGTGtctaaataaaaatatattttgcttTTGACAGAA
TATCATTGATGTgatttaaaacttttctttttcagattattTGTTTAAAT
TCTTGATTATTGGAAGTGCAGGAGTTGGAAAGTCATGTATTTTACATCAA
TTCATGGAAAGTAAATGTAAGTTTCAAACCCCTCGTCTACAAGCATATCA
GTATACACCCAGGATAACACATCATacagtttttggacctaccttggagg
tcctataaattaacccatgtttgtccgtccgtccgtctgttaccagcttt
tctcaggattggctcattagttttttctgatttttggcacagtgatgcaa
aatgacaatgcccaaaatgtgacggagcccgattttcggaaaaaaaaatt
ttccggccgaaaatgccagatatatcccggaaaaactgtttttttggcac
tttctcgagattttatcattagttttttctgattttttgctcaaagatgc
gtattaacaatgcccaaaacatggtcgagtccaatttttgggaaaaaatt
ttttccggccgaaaatgccggaaatgtgccggaaatcgccgtttttctgg
attttcattgggctttttcctttggttgttttttcatttaaaaacattat
taatagcaatgcccaccatcaagcatgtttcaattttcaataaaattgat
ttttgaagccggaactattcaaaaatcgccggaacaacctattttcgccg
gaaagacagtatttcttgaatttctcaacctgtactttatattttttaat
gaaattttgcacactgattcaaaatgacaatacctaaaatgtgaccggcc
agattttcgaaaaacatttttttctggctgaaaatgccggaaatatcccg
aaaaactgtttttttggcattttctcgagattttatcattagtatTTTTA
TCATtagtattttctgattttttgttcaaagatgcgtattaacaatgccc
aaaatatggctgagtccgattttcgagaaaaaaaattttccggccgaaaa
tgccggaaatatgccggaaaaaacggtttttgacattttctcgaattttc
atccttaattttctctgattttttgcagaatgatgcgtattcgcaatgct
caaaaaatgaccgagccggaaatttccgtttttgcagattttcgttggat
tttttcgttttatgtttttcaaacaaaaacattatttataagaatgtcca
cgattaagcatggttcaattttcaataaaactgattttggtacaggaact
ttctaaaaatcgccagaacagccgagaatcgccggatttcattaatttct
cgagtttttcttgttctttattttttcaatattttgaccagttatgtcct
ATGTGTTGCATTGTTTCATTGTTCATTGATtattttgataaccaggtagg
tccataaaagtatcacttgttttgttTGAAACTTTTCTAGAGCTATAGCT
TtagtagaaaaaaaattttttaacagctaaaattacattaaaatatAATG
ATTTTCTCTTatatataaaatcaaaattcgAACCATTTTTATTGAATTAT
ATTACATACAGTGGCATCAAGCTGTCAGAATAACTAAAGATATTATTgcc
tggaaaattcttttttggtcAACTAAGGTCAAATGTTTAGCCTGTTTTTC
AGGAGGTTTTGTAAATTCACTCCTTGGTCTATTTGAACTGTTTTTCTTAT
TTCAGTTGGTTATGAGTGCTTGCAATACAAAACTGGGTCACAGTAATGGT
TCAATCATAGTTTCCTCCTTTCCTCCTCCTACTTTGCATTGCACACTAAA
ATGTAGTACTTTAAAAACTGTCACCACagagaaataaataaattgctAAT
CTAAATAAAAACTCTTGCTTACAGTATATGTGatttgaggaaaaaaaaaa
catgcactatgtaaaaaaaaactaaaaagctGATAGAAGACTGACTTTct
gttaaaaagttgaaaagttctCTCCCctcccagaaaaaaaaattgaagga
aaatcACTTGATTTATTGCTAAAAAACTAGCAAGGTTTTTTTTACATAAC
AAGTTAGATCTTTAGGCTATTAAGATGCATGCAGATGCATGAAAACACCT
ATTTTTAGGACGTTTAGAggcaaaaattttcttcctcGCCCAACCATAGT
GGTCGACATTTAATATACCACCGCATTTATCTCAATTATCAGACCAAAAT
GGTTGTAAGGAAAATTGCTGGGAAAATAACCTGATCAAAtaatgtctgag
attttagtaccaacGCCTTTCCCTGCTAGGTGAATTCCCCAAAATTCGAC
CCCTCAAAAATGAACTTCTCAATATTAAGCGggtttaaagctttttttga
aataaattaatgGAGGTTTTAACCACAGGGAGTTGGCTCTATGTTTATTA
TGCTAGGTTGTAATTTTTTCACAATGTGGCCGAAATCTTacttttttgta
tattttcagTCAAACAAGATGCACACCATACAATAGGCGTGGAGTTTGGA
TCAAAAGTAGTTAACATTGCAGGAAAATCCATCAAATTACAAATCTGGGA
TACGGCAGGACAAGAAAGATTcaggtaaaattttcttaatgTTATCAGTG
ACATGAATGTGTCTTGTATATCATAGTAATGCAGAACACAACAATCAATC
AGTTTTTGTTTATGCTAAAAGCCAATTCGTTCGTGGCTAACAAATACAAA
GCTGCAAGGTAAATGGGAGTCATCTAgtgatttgatttgaaaagttCCTA
ACTCCTACAAATGTGTCTAGGATTTCAGGAGGGCGCATATACGAAGTGGC
ATTTAAaggaagggggcgtttattaaaattAGGGTAGATcgattttttgt
gaaaatttaatctattgcaATACATTTTGCgtcaaaaatccagcattcct
caggggggtctttgattctcactaaagcaaaaaatgatttaaaatggcat
tttttgcccattttaaggcTATGAAAGGCCAGGAAAGGATCAAAATgatt
tctaaatggtgtcttgtactaatattgaacataaaaagacaaaataaccc
ctgcgagatcgctcaatgtttcaatttcaggctaaaaaggctgattttct
ccgattctgggtagcTAAATGCATTAAAGCaccatttttgaggacccaca
acttttaaacttttcatggtacacaattgagttttcatgctactttaggc
gtacaaactttcgcgagcagaaactttcgcgaggacgaaaaatcgcgaaa
ttcacgacatttactttcgcgaatttaacggaaaaatatttttcgcgagc
attaactttcgcgaatcaagacgtaaaattgagtattttcacatgaaaaa
atggcttagaggggcaaatacttcttgaattggcttgaaacatttgtcct
ttgacttattagtcttttagaaggttaaaaagtgccataaaagttacatt
ttattcaaagtttgaagttatacagattttctgttttgtcaaaaaatttt
cgcgatgataaactttcgcgaatgctcctttctagaatttttaaagacat
ttactttcgcgaaaagggccaaaattcgcgaaaatcgcgaaagtttctgc
tcgcgaaagtttgtacgcctgaagtaaatgccaatatttcaagctaaaac
tttgttttcttgggccaaaatctcaaaaatgatttcaaatagggtcctga
aatcttttggtgttgaaagtattctggaaacactctgggaaaaccaaaat
ggttttggtcaggaatttgccaaagtccgccattatggaatttcttttcc
cactaaaacgcgatATTCAGAGTAAAAGTCGaattttctcaggctagaat
ctcaaaaatggttccAAATGGGGTCCTGAattcttttggtgttgaaagta
ttctggaaacaCTCAAGGAATATCAAAATGGTTCGGGTCAAATATATGTC
AAAGTCTACCATTATggattttatttctttaggaagaacactcaaactta
ctcaaaacattgtgttttagaatataatacaattccataatgattTTGGC
CCAGTTCTGACCAAAACCATTTTAGTTTTCCcagagtttttcattttttg
agattttggcccaagaaaaccaagttttagcttgaaatattggcatttag
catgaaaactcgatttctagggcgccattatggatttataggaaattctt
gaaaactcaaaatttatgTTACCTTGAGCTATCcctgaagtgtttcattg
ctgaaaatttcaagtgtgtacctagttgtgggtcctcaaaaatgctactt
taatgcattttgctacccagaatcggagaaaatcagccgttttagcctga
aattgaaacattgagtgATCTCGCTGGggattattttgtctttttatgtt
gaatatttttaacgtacaagacaccattaagaatattttgacCTTTTCCG
GCCTTGTTGGATTTTTTAtctaggaggttaaaaattaaaaattaaaaaat
taaattttcacaaaaagatactacactttgaattttttgactttgccatt
tgacgatctaccctattaaaataatttttcaccgAGGTCACTTTCATATA
AAGGGGAATTTTGTTTTgccttttcgttttcttttagTTCAAGAAAGAGA
AGAGTTCTTTTAGTTCATTTTAGAGATGTAAAAATGGGTCAAAAGTTgtt
tgaatactgaaatttgGAATACAAGTTATTAACACATATTCAAGTTTTTC
TCCATATTCTCTCTTACAACCACttatttcaaataaacgcccgcCCCATC
CTAGAAGGGAGTTAAGTTTATTCGAAAGGGGCGTTCAAAAGAAGGTGgtg
tttatttgaagtaatacggtaattgCTCCGTCCAGTCGTGGTTTTCCATA
TTAATTCTCATTTATTTAGATCAGTCACAAGGAGCTATTATAGAGGTGCA
GCTGGTGCTCTACTGGTCTATGACATTACAAGGTTTCTAGCTATTTCATT
GTTACTTAGCCAAAAAGATCGACTCTCGCTTGCTTTTTACTCCGATGTCG
TAATCAATGGCATTGTATTGTAAAGGCCCCGAGAAATAATAATCACTAGC
CAGTATCGAGCTACTAGTATTTGTTAattttctttcacaaaaaagttatG
AATATATAACAGGGAAATTCCCCTCGTTAACCCTGTCGTCGACCGGGAAA
TAACCCTTTAACACTGCTATAACaaatttattttgttcaatctagtttta
aattatttaacaaagtagaaaatatttcgaaattgaGGTTCACAGGATTG
GCAGCTAATTCTCTATCTTCCATCGTATGTTTAGTCGGGAAACATACAAC
AATTTGACGTCATGGTTGACAGATGCACGCACGCTGGCCAGTCCAAATAT
CGTCATCATTTTGCTTGGGAATAAGAAGGACTTGGATGCTGATAGGGAAG
TCACCTTTTTGGAAGCCAGCAGGTTCGCACAAGAAAATGGTATGTCGTTT
TTCTTACACTTTTGGTAAATCTTCCCCTTAGAGTAAGCTTAGGACAACGT
CGCTTGGGCACTTCCTTTTTCACCTCGAAAGTAAATTTCTTCATCTGGAT
CTTTTTCCTGTTTCTAGAATGTAGAATGTAGAATATATATACTTTGATCA
ACTGACACTTCAAAAGGGAATCCCTTTGACGAATTATAAAACTCAGAGCA
GAATGTCTGGCTATCTTGCCGTTTGTTTATTTCAataatctttttcaaat
taGTGGACAGGTAACAAGTGTAATTAACTTAATGAGAAAACAGGAATTGA
AGACAATACATACCACAACACTATCAAAGAGTTGCTTTATGATTGCAAAT
GttaattttgatgttattttctttttagaattGATGTTTTTAGAGACGAG
TGCAATGTCCGGAGAAAATGTAGAAGAAGCATTTCTGAAATGTTCCAGga
ctattttgaccaaaatcgATGCAGGTTCGTCTctcaatttattttttgta
tctAAAGAATGATTATAGTGTTTTGGAAGTTGTTTATTGATTGGCTAATT
ATCTGGAAAGGGTTTTATTTCATATAGATTCGTATAAATTCGTATAAATT
CACTTCTATTGGAATTTAGGCAGTGTCATTTTTCTTTGGTAAAAAGCTGC
CGCAATCTATGAgttaatttctttgtttttaggtGAGTTGGACCCTGAAA
GAATGGGTTCGGGAATTCAATATGGTAATACGTCACTTCGGAAAACTACA
CAACAGAAACCAGAAGGAGAAAAATGTGATTGCTAGTCTTAAGTGTTTTG
ATTTCTAGAGTGTCTTCTTCAGAAGTGTTTTACTGAATCAACGAGCTTAA
TGCTAGTTAAGACCACGTATCATTGATTTTTAACAATGGGTGTACACCAT
ATTTCACTCATTTTAAAATTGTAGGCTTTTGACTAACCTGGTCATACCAT
ACCTTTgcattttttatttgtaaatgAATTTTAACCATTGATCGCGAGCT
TGTTTGTCTCTATGTTAAAAACGATATTTTTGCGAGTGTTAGTAACAGCT
TTTTTGTACGCGAGTGACCTTTTGTTCGAACCCTCCGCTCCTCGAATTTC
GGGGTTTGTATGTTCTgggtgtttttattaataatattttgattataaga
tagaatttaatcataaaaaagaattgaaaatctTGTATAttatatttgga
aaatttagaGTCCTTAGACCTAGCTTTTTATACGTTTCTGTTAAAAATCT
cgttcattttaattttttagtttttcatttgttttttttttcagttgctt
ttctttttgtttgcatttttaaTTCACGGGTCACTAACCATCATATTAAG
TTTTTGCGGCTCTCCTGTTTTGTGCTTAACTTAAgctgttgaaaaatttc
aactaaATCCATTTCATAAGGAACTTTCAACTACATTTAATAACCACTAC
TTTAATAAGTCAACCACCTAGATATACGTATTTTAAATCTTCTTTCTGGA
AGTGTGTAATACATAAATTGTAGAATTTAGCAATTTATTATTCAgggcat
tttatttttaatatatttttgagtTATTGTTTTATTCCATACAACAACGC
AAATGACAAGTCCGAAATGGACCAAAATGTTTCCTCGGTAATGCTGTCTT
ATTTTGGTTTGGGATCATTTTCCAGGAGATACGCATGTAGCAGCCTGTAG
TTAAGTGATTATTAGCTATTGTTAGCTTTCTATCCTTTTAGGGTAAATTT
TGGAGTAAACGTCACATTTTTGGTGTGGTTTTTTTTTGCCATCCTAACAT
GgtgaaaatttggctgaataTTCTTTCGACAAAGTTTCCTCATACTCTTA
TATAAATTTGTGTTTTCCAgaactaaaagaaaaaacaaaaaaatataaga
gGGAATCAATATGAAAGCATTCGATCAAGAAACCTTCGAGAATATTTTGT
CATCCAAAGGAGTGAAGATAGCGGATTACGTTCAAAAACGCGATGCTGAA
GACGAAGATCTCATCTTGAGACCATTGGAGGTCAATGACCACACCAAAGG
TTTGTCCTCATTCATCCTCACTGTCATTTTTCGGATCGCGCAATGACCTT
CGATAATTTCCTTTAATTGCTGAAATCCATAATTTAGACAGTCAGAATAC
TCAGGGGTATTCTAATTTCACCTtgtttaccttaagggaacttattttcg
cgatgCGAGGGTACTAAATTAGTGTAttttgcggaactaattttcgtggt
tgacacccactttttgccaaaattctTACCTGTTCCTAGGGTTTTTGAGG
ATTTTCAGTAACACTTGCATTTCGCGATAGACagccaaaaatgtgaaaat
tcgttcccgcgaaaattagttcccttaaggtgctctttttaaaaagatga
TGAAGGTGTGACTGGCGTGTATAGCAATGATCTTCTCTATCGTCTCGTTT
CTAGGCTACTTGGAATTGATCTTTGATGACGTAGAAACTGCTGATAACAA
TGAACGAGAAAGAGTTTTCGAAGGTACTTTCAAATCTTGTGGTATGAAAA
CTAGTGTAGTAGGGGATCTTTATCTGTAATATTTAATGTCTTTGTTTAAT
GGTAGGAgctctttttttctttcccgTTTTGTACCACCACGTAAAGAAAA
TAAGATTGTCTGGATGGTACCTGACCCAAAGACCTATTTTGTTGGGACAC
CTACAAAGGGGCTGACCCCACGTCTGTTAATACGTATTTCAGTTGAATTG
ATCTATTACTTTACATCATACCAACAGAGTATTTATCACTACAAGACACG
TGTCCCGGAACTTATTACACTATCGTCGTTGAGGATTTGAATCGAAACAA
AATCATCGCCAGTGGAACACTCATCGTGGAGCAGAAATTTATTCATGAAA
TTGCTCTGGTAATCATgaactttttctaaaaagttaattttcttcAAGCG
ATTTAGTTAATAAAACCAAACTTCATCCTTGTATCACTCGTGTACACGAG
GTCAAAAAATCTACGAAACATAATATCTGCCATTTTTATGTCAAGTTGTG
TCAACCATTGCAGAGTGAGAAAAGAATTACGACACCTCCGAATTTTCACA
CTGCAAAAGTTTCCAAGGTTGTTGAGCACTAATCAAAACCTTCCCATGTT
TTATAGAGAGGACGAATCGAAAATATGATCGTCGATCAAGAGCACAGGAG
AAGGAAGATCGGTTCCGTGTAagtctattgtcattttttgtctattttta
cgGGTTACATCTTCTATCTGTGACTCCAACATCgtttgaaaatattcata
aGTTTAATGCGCACAGGAGCTTGAAATTTGCTCAATTTGTTCTTGTGGAA
AATTCTTGGTACGGAGTCGGTTATGAAGACTTTTTTACACCGCAAGAACC
AAAAGTTGCTCTAGTAAAGGTAGCATCTCATGTATACAGGTTCGAGTTGA
GGAGTCTCTTCTGTACCTCTTTAAGGGTGATTTTATAAACAGCCGATGTC
TCCACTCTCTTCTTGcttgatgatattttttctaaaaataaattctaGAA
TAAAAAACTAGCTGATACCACGCGTTTCGTGATGATGTGATTTCAAATGA
AATCTACAATGCACTGGGTTGGAAGATTGTGTCTTCTTAGACTATTTAAc
tattatattttgttttcttttcccCAGTGTTTTAGGATTATTGACATTCT
TAGCAGAGAAGCTTGGCTGTTACAAAACGACGCTGAACTGCACAGACGAC
GTGGCATTGTTTTGTGAAAAGATGAAATATATGCACGAGGCTGGACAGAA
TTTTATGCTATGTCATGTAACACCCACTGTCATCAACCCTGATCACGAAA
ATACGTCTCGTCTATAAATAGCTGAcaaataaacacttttttaagatCGA
TGTTCGATTctatgttttaaaatggtgaAGATTCAATCTTTGGATCACCa
cagtaaaaataattactGAATTCTGTGTGTTTCAATATGCCATTATTAGA
ATGGACTCTTGACAACAGTTAGATGAATCTTTTTGTTCGATTAAGAGATT
GAATTAAAGGAtcttaaattgaaaatattagagccggctttcaaaatttt
gttaaactgaatttttttctgcaactttaaAGTGATTGTGAATTTGGGTT
TTCATCACAACCTTTCCTTTAGTTTGAAAACTTCAGCTCCTCGTTGAGAA
AATCAATTCATTTTGTTTGAAGAAATGAATTCTTGAAGTTTGCatgaaat
ttacaaaaaatctttcttatatttttttttcgatttttgacgcATATTTT
CTATAATCTTGTAAATACTCAGTGACTATTTGGGTTCAATTtatttaaga
gcatttttaaatTTACATAAAATAGTGTAGAGTTAAATCATTTGAGTGAC
GAGAGGTTGATGATATGTGCTTCCTTGGTTCTATGGCTGCTGATTTAGAT
ATTTCCTTAAATATAACTTAAATCTTATGTAGTTTCCATTTTTTCGGATT
ATTTTGATATCTACCAAAGAATCGCATTcttgacacccctgtctctcgGT
GGAATTTTTCCCACGGcgaggataaatttttttattgaaattcaaatgga

Coding sequence (CDS) from alignment at sc0000320:227698..238147+

>TCONS_00019168 ID=TCONS_00019168|Name=TCONS_00019168|organism=Clytia hemisphaerica|type=CDS|length=4410bp|location=Sequence derived from alignment at sc0000320:227698..238147+ (Clytia hemisphaerica)
ATGTCAGAAACATATGattattTGTTTAAATTCTTGATTATTGGAAGTGC
AGGAGTTGGAAAGTCATGTATTTTACATCAATTCATGGAAAGTAAATTCA
AACAAGATGCACACCATACAATAGGCGTGGAGTTTGGATCAAAAGTAGTT
AACATTGCAGGAAAATCCATCAAATTACAAATCTGGGATACGGCAGGACA
AGAAAGATTcagATCAGTCACAAGGAGCTATTATAGAGGTGCAGCTGGTG
CTCTACTGGTCTATGACATTACAAGTCGGGAAACATACAACAATTTGACG
TCATGGTTGACAGATGCACGCACGCTGGCCAGTCCAAATATCGTCATCAT
TTTGCTTGGGAATAAGAAGGACTTGGATGCTGATAGGGAAGTCACCTTTT
TGGAAGCCAGCAGGTTCGCACAAGAAAATGaattGATGTTTTTAGAGACG
AGTGCAATGTCCGGAGAAAATGTAGAAGAAGCATTTCTGAAATGTTCCAG
gactattttgaccaaaatcgATGCAGgtGAGTTGGACCCTGAAAGAATGG
GTTCGGGAATTCAATATGGTAATACGTCACTTCGGAAAACTACACAACAG
AAACCAGAAGGAGAAAAATGTGATTGCTAGATGTCAGAAACATATGatta
ttTGTTTAAATTCTTGATTATTGGAAGTGCAGGAGTTGGAAAGTCATGTA
TTTTACATCAATTCATGGAAAGTAAATTCAAACAAGATGCACACCATACA
ATAGGCGTGGAGTTTGGATCAAAAGTAGTTAACATTGCAGGAAAATCCAT
CAAATTACAAATCTGGGATACGGCAGGACAAGAAAGATTcagATCAGTCA
CAAGGAGCTATTATAGAGGTGCAGCTGGTGCTCTACTGGTCTATGACATT
ACAAGTCGGGAAACATACAACAATTTGACGTCATGGTTGACAGATGCACG
CACGCTGGCCAGTCCAAATATCGTCATCATTTTGCTTGGGAATAAGAAGG
ACTTGGATGCTGATAGGGAAGTCACCTTTTTGGAAGCCAGCAGGTTCGCA
CAAGAAAATGaattGATGTTTTTAGAGACGAGTGCAATGTCCGGAGAAAA
TGTAGAAGAAGCATTTCTGAAATGTTCCAGgactattttgaccaaaatcg
ATGCAGgtGAGTTGGACCCTGAAAGAATGGGTTCGGGAATTCAATATGGT
AATACGTCACTTCGGAAAACTACACAACAGAAACCAGAAGGAGAAAAATG
TGATTGCTAGATGTCAGAAACATATGattattTGTTTAAATTCTTGATTA
TTGGAAGTGCAGGAGTTGGAAAGTCATGTATTTTACATCAATTCATGGAA
AGTAAATTCAAACAAGATGCACACCATACAATAGGCGTGGAGTTTGGATC
AAAAGTAGTTAACATTGCAGGAAAATCCATCAAATTACAAATCTGGGATA
CGGCAGGACAAGAAAGATTcagATCAGTCACAAGGAGCTATTATAGAGGT
GCAGCTGGTGCTCTACTGGTCTATGACATTACAAGTCGGGAAACATACAA
CAATTTGACGTCATGGTTGACAGATGCACGCACGCTGGCCAGTCCAAATA
TCGTCATCATTTTGCTTGGGAATAAGAAGGACTTGGATGCTGATAGGGAA
GTCACCTTTTTGGAAGCCAGCAGGTTCGCACAAGAAAATGaattGATGTT
TTTAGAGACGAGTGCAATGTCCGGAGAAAATGTAGAAGAAGCATTTCTGA
AATGTTCCAGgactattttgaccaaaatcgATGCAGgtGAGTTGGACCCT
GAAAGAATGGGTTCGGGAATTCAATATGGTAATACGTCACTTCGGAAAAC
TACACAACAGAAACCAGAAGGAGAAAAATGTGATTGCTAGATGTCAGAAA
CATATGattattTGTTTAAATTCTTGATTATTGGAAGTGCAGGAGTTGGA
AAGTCATGTATTTTACATCAATTCATGGAAAGTAAATTCAAACAAGATGC
ACACCATACAATAGGCGTGGAGTTTGGATCAAAAGTAGTTAACATTGCAG
GAAAATCCATCAAATTACAAATCTGGGATACGGCAGGACAAGAAAGATTc
agATCAGTCACAAGGAGCTATTATAGAGGTGCAGCTGGTGCTCTACTGGT
CTATGACATTACAAGTCGGGAAACATACAACAATTTGACGTCATGGTTGA
CAGATGCACGCACGCTGGCCAGTCCAAATATCGTCATCATTTTGCTTGGG
AATAAGAAGGACTTGGATGCTGATAGGGAAGTCACCTTTTTGGAAGCCAG
CAGGTTCGCACAAGAAAATGaattGATGTTTTTAGAGACGAGTGCAATGT
CCGGAGAAAATGTAGAAGAAGCATTTCTGAAATGTTCCAGgactattttg
accaaaatcgATGCAGgtGAGTTGGACCCTGAAAGAATGGGTTCGGGAAT
TCAATATGGTAATACGTCACTTCGGAAAACTACACAACAGAAACCAGAAG
GAGAAAAATGTGATTGCTAGATGTCAGAAACATATGattattTGTTTAAA
TTCTTGATTATTGGAAGTGCAGGAGTTGGAAAGTCATGTATTTTACATCA
ATTCATGGAAAGTAAATTCAAACAAGATGCACACCATACAATAGGCGTGG
AGTTTGGATCAAAAGTAGTTAACATTGCAGGAAAATCCATCAAATTACAA
ATCTGGGATACGGCAGGACAAGAAAGATTcagATCAGTCACAAGGAGCTA
TTATAGAGGTGCAGCTGGTGCTCTACTGGTCTATGACATTACAAGTCGGG
AAACATACAACAATTTGACGTCATGGTTGACAGATGCACGCACGCTGGCC
AGTCCAAATATCGTCATCATTTTGCTTGGGAATAAGAAGGACTTGGATGC
TGATAGGGAAGTCACCTTTTTGGAAGCCAGCAGGTTCGCACAAGAAAATG
aattGATGTTTTTAGAGACGAGTGCAATGTCCGGAGAAAATGTAGAAGAA
GCATTTCTGAAATGTTCCAGgactattttgaccaaaatcgATGCAGgtGA
GTTGGACCCTGAAAGAATGGGTTCGGGAATTCAATATGGTAATACGTCAC
TTCGGAAAACTACACAACAGAAACCAGAAGGAGAAAAATGTGATTGCTAG
ATGTCAGAAACATATGattattTGTTTAAATTCTTGATTATTGGAAGTGC
AGGAGTTGGAAAGTCATGTATTTTACATCAATTCATGGAAAGTAAATTCA
AACAAGATGCACACCATACAATAGGCGTGGAGTTTGGATCAAAAGTAGTT
AACATTGCAGGAAAATCCATCAAATTACAAATCTGGGATACGGCAGGACA
AGAAAGATTcagATCAGTCACAAGGAGCTATTATAGAGGTGCAGCTGGTG
CTCTACTGGTCTATGACATTACAAGTCGGGAAACATACAACAATTTGACG
TCATGGTTGACAGATGCACGCACGCTGGCCAGTCCAAATATCGTCATCAT
TTTGCTTGGGAATAAGAAGGACTTGGATGCTGATAGGGAAGTCACCTTTT
TGGAAGCCAGCAGGTTCGCACAAGAAAATGaattGATGTTTTTAGAGACG
AGTGCAATGTCCGGAGAAAATGTAGAAGAAGCATTTCTGAAATGTTCCAG
gactattttgaccaaaatcgATGCAGgtGAGTTGGACCCTGAAAGAATGG
GTTCGGGAATTCAATATGGTAATACGTCACTTCGGAAAACTACACAACAG
AAACCAGAAGGAGAAAAATGTGATTGCTAGATGTCAGAAACATATGatta
ttTGTTTAAATTCTTGATTATTGGAAGTGCAGGAGTTGGAAAGTCATGTA
TTTTACATCAATTCATGGAAAGTAAATTCAAACAAGATGCACACCATACA
ATAGGCGTGGAGTTTGGATCAAAAGTAGTTAACATTGCAGGAAAATCCAT
CAAATTACAAATCTGGGATACGGCAGGACAAGAAAGATTcagATCAGTCA
CAAGGAGCTATTATAGAGGTGCAGCTGGTGCTCTACTGGTCTATGACATT
ACAAGTCGGGAAACATACAACAATTTGACGTCATGGTTGACAGATGCACG
CACGCTGGCCAGTCCAAATATCGTCATCATTTTGCTTGGGAATAAGAAGG
ACTTGGATGCTGATAGGGAAGTCACCTTTTTGGAAGCCAGCAGGTTCGCA
CAAGAAAATGaattGATGTTTTTAGAGACGAGTGCAATGTCCGGAGAAAA
TGTAGAAGAAGCATTTCTGAAATGTTCCAGgactattttgaccaaaatcg
ATGCAGgtGAGTTGGACCCTGAAAGAATGGGTTCGGGAATTCAATATGGT
AATACGTCACTTCGGAAAACTACACAACAGAAACCAGAAGGAGAAAAATG
TGATTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010756XLOC_010756Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019168-proteinTCONS_00019168-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019168-exon-sc0000320-1491911889:227698..227848TCONS_00019168-exon-sc0000320-1491911889:227698..227848Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:227698..227848TCONS_00019168-exon-sc0000320-1510915933:227698..227848Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:227698..227848TCONS_00019168-exon-sc0000320-1575043694:227698..227848Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:228083..228163TCONS_00019168-exon-sc0000320-1491911889:228083..228163Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:228083..228163TCONS_00019168-exon-sc0000320-1510915933:228083..228163Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:228083..228163TCONS_00019168-exon-sc0000320-1575043694:228083..228163Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:230507..230621TCONS_00019168-exon-sc0000320-1491911889:230507..230621Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:230507..230621TCONS_00019168-exon-sc0000320-1510915933:230507..230621Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:230507..230621TCONS_00019168-exon-sc0000320-1575043694:230507..230621Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:232967..233029TCONS_00019168-exon-sc0000320-1491911889:232967..233029Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:232967..233029TCONS_00019168-exon-sc0000320-1510915933:232967..233029Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:232967..233029TCONS_00019168-exon-sc0000320-1575043694:232967..233029Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:233382..233536TCONS_00019168-exon-sc0000320-1491911889:233382..233536Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:233382..233536TCONS_00019168-exon-sc0000320-1510915933:233382..233536Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:233382..233536TCONS_00019168-exon-sc0000320-1575043694:233382..233536Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:233926..234021TCONS_00019168-exon-sc0000320-1491911889:233926..234021Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:233926..234021TCONS_00019168-exon-sc0000320-1510915933:233926..234021Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:233926..234021TCONS_00019168-exon-sc0000320-1575043694:233926..234021Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:234230..235596TCONS_00019168-exon-sc0000320-1491911889:234230..235596Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:234230..235596TCONS_00019168-exon-sc0000320-1510915933:234230..235596Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:234230..235596TCONS_00019168-exon-sc0000320-1575043694:234230..235596Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:236002..236070TCONS_00019168-exon-sc0000320-1491911889:236002..236070Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:236002..236070TCONS_00019168-exon-sc0000320-1510915933:236002..236070Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:236002..236070TCONS_00019168-exon-sc0000320-1575043694:236002..236070Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:236325..236455TCONS_00019168-exon-sc0000320-1491911889:236325..236455Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:236325..236455TCONS_00019168-exon-sc0000320-1510915933:236325..236455Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:236325..236455TCONS_00019168-exon-sc0000320-1575043694:236325..236455Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:236704..236765TCONS_00019168-exon-sc0000320-1491911889:236704..236765Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:236704..236765TCONS_00019168-exon-sc0000320-1510915933:236704..236765Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:236704..236765TCONS_00019168-exon-sc0000320-1575043694:236704..236765Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1491911889:237225..238147TCONS_00019168-exon-sc0000320-1491911889:237225..238147Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1510915933:237225..238147TCONS_00019168-exon-sc0000320-1510915933:237225..238147Clytia hemisphaericaexon
TCONS_00019168-exon-sc0000320-1575043694:237225..238147TCONS_00019168-exon-sc0000320-1575043694:237225..238147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000320supercontigsc0000320:227698..238147 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.9381	38.8461	56.7243	59.1067	26.1994	20.9296	32.0683	33.007	47.1933	37.2041	44.9296	68.6895	43.0431	47.4496	31.5661	29.3485	23.7161	25.1716	27.2432	26.3929	20.9762	20.3014	24.6858	25.9639	21.3786	22.4183	26.5745	22.7614	20.5146	21.4086
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00019168 vs. Swiss-Prot (Human)
Match: RAB4B (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 1.611e-118
Identity = 171/213 (80.28%), Postives = 194/213 (91.08%), Query Frame = 1 
Query:  136 MSETYDYLFKFLIIGSAGVGKSCILHQFMESKFKQDAHHTIGVEFGSKVVNIAGKSIKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNNLTSWLTDARTLASPNIVIILLGNKKDLDADREVTFLEASRFAQENELMFLETSAMSGENVEEAFLKCSRTILTKIDAGELDPERMGSGIQYGNTSLRKTTQ----QKPEGEKCDC 762
            M+ETYD+LFKFL+IGSAG GKSC+LHQF+E+KFKQD++HTIGVEFGS+VVN+ GK++KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN+L +WLTDARTLASPNIV+IL GNKKDLD +REVTFLEASRFAQENELMFLETSA++GENVEEAFLKC+RTIL KID+GELDPERMGSGIQYG+ SLR+  Q    Q    + C C
Sbjct:    1 MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYGDASLRQLRQPRSAQAVAPQPCGC 213
The following BLAST results are available for this feature:
BLAST of TCONS_00019168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB4B1.611e-11880.28Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
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