TCONS_00019168-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019168-protein
Unique NameTCONS_00019168-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019168-protein ID=TCONS_00019168-protein|Name=TCONS_00019168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MSETYDYLFKFLIIGSAGVGKSCILHQFMESKFKQDAHHTIGVEFGSKVV
NIAGKSIKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNNLT
SWLTDARTLASPNIVIILLGNKKDLDADREVTFLEASRFAQENELMFLET
SAMSGENVEEAFLKCSRTILTKIDAGELDPERMGSGIQYGNTSLRKTTQQ
KPEGEKCDC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010756XLOC_010756Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019168TCONS_00019168Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 112..125
score: 51.98
coord: 147..169
score: 41.62
coord: 50..72
score: 55.04
coord: 32..48
score: 30.36
coord: 9..30
score: 43.39
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..173
e-value: 0.0035
score: 1.2
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 6..172
e-value: 2.1E-24
score: 97.1
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 14..209
e-value: 1.6E-10
score: 50.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 9..172
e-value: 5.5E-96
score: 334.9
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 11..172
e-value: 2.0E-9
score: 1.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 8..72
e-value: 6.5E-28
score: 96.1
NoneNo IPR availableGENE3D3.40.50.300coord: 73..170
e-value: 7.5E-37
score: 124.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..209
NoneNo IPR availablePROSITEPS51419RABcoord: 4..207
score: 35.038
NoneNo IPR availableCDDcd04113Rab4coord: 9..169
e-value: 1.4103E-113
score: 323.232
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 8..162
e-value: 3.9E-30
score: 102.7
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 10..170
e-value: 4.3E-58
score: 195.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..185

Blast
[Close]
BLAST of TCONS_00019168-protein vs. Swiss-Prot (Human)
Match: RAB4B (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 6.994e-131
Identity = 171/213 (80.28%), Postives = 194/213 (91.08%), Query Frame = 0 
Query:    1 MSETYDYLFKFLIIGSAGVGKSCILHQFMESKFKQDAHHTIGVEFGSKVVNIAGKSIKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNNLTSWLTDARTLASPNIVIILLGNKKDLDADREVTFLEASRFAQENELMFLETSAMSGENVEEAFLKCSRTILTKIDAGELDPERMGSGIQYGNTSLRKTTQ----QKPEGEKCDC 209
            M+ETYD+LFKFL+IGSAG GKSC+LHQF+E+KFKQD++HTIGVEFGS+VVN+ GK++KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN+L +WLTDARTLASPNIV+IL GNKKDLD +REVTFLEASRFAQENELMFLETSA++GENVEEAFLKC+RTIL KID+GELDPERMGSGIQYG+ SLR+  Q    Q    + C C
Sbjct:    1 MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYGDASLRQLRQPRSAQAVAPQPCGC 213
The following BLAST results are available for this feature:
BLAST of TCONS_00019168-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB4B6.994e-13180.28Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
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