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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019133 ID=TCONS_00019133|Name=TCONS_00019133|organism=Clytia hemisphaerica|type=transcript|length=2225bp
aaaattgaatagaTCAGTTCTTATCAGTAACATCGAAAGTAATGGTTCCT
TTTGTAACATTTCTGGTTTCCATAGAAACTGTATCCTTAATTAGCTTTAT
TCCATTATTCGATGATGTTGCATTATGAGAAGATTGTTTCTCCTGACATC
CGGTTCAAGAGTAGATAAATACTTTTCATGACAAGACAACCCATGATTGG
CACCATTAGTTGGCTTCTTATGAGCAGGAGAGACGGTGATGCGAGAAATT
GAAAGATAGAAGAAGAGAAATCAAAATGATGAGTCCAATGAGTCCAACAG
CTATGATGAAGCCGACTTTCCAACGTTCCAGATCGAAGGTTGCCAGACCG
GGTTTCTTATATAGAAGACGCACTTTATTGACGCTTGGCTTCTTTTCGAT
CACTGCTCTTTTGTCGTTATTCCTGGTCATTCGATCAAAGCACTTCTTAT
ATAGACATCAAATTCAAATCGAGAAATTGTATTACAGTAATAAAGATTTT
GCTCAAGATAGAAATGCCTACATGGAGACCATCGAAGGGAAAGGAGACCA
AAACTTGATTGCCAATAACGAATTCTTGAAACAAATTCGAGGAAAAGGCG
AAGAGCTGAGCAATACATTGTATCGGTTGAACAATCAACAAAGAGCTTTA
CCTTATCCCATAGCTGAAGAATCAGTGaagaaaatggaagaaaatatTCC
CATTCGTTATCACCCAGAAAGCAAAGAAACCAAGAAGACAGAATCGAAAG
CAACATCCTCAGAACTGATAAATGCTACAGACATTTTAAAGAAGCTGGAA
GAATTAACTTCAAAAGTCGGAGAAATTTCCAAGAAAATTGACCATGAGGA
TAAAGAGAACACATTCAGTatgaagaaaaacaacaaagcaTCAGTTATTA
ACCCGTCCTCCGTCAAGAAATGTGTCAACTCTACCATACTCTTTCTTGTT
ACGTCTCACTCATCTAACCGAAAACGTAGAGCTGCCATTCGAAACAACTG
GGGATTCACAGAAATCTTCCGACTCTTCAAACGTAAATTCAATCTGGATT
ACCAAGTTTATTTCTCGGTTGGTTTAGCAGATAATTATGAAGAATCAGTA
CAAATCAAAGCAGAGTCAGAGAAATATAAAGACATTTTGATTATTGATCG
GAATGAAGATTTCTACGATTTGACACGCAGAGTTATGGCTGGTTTTGAGT
GGGCAGTACAACAATGCGAGTTCACATACCTCTTCAAGATCGATGACGAC
ATTTTCATTAATATCCCTAATGTTATGCAATTCATTTCGAATACAACTAT
CACCAAACATAAGGACAGTTTATACGCTGGCGATATGAATATTCAAGCAC
CAGTGATTCGAGATTCAAAAAGCAAATACATGGTGACGTACAAAGAATGG
CCGACAGAGATCTACCCTCCTTACTGTAGTGGAGGCGGTTTCATTATATC
CAGAGATATCATCAAACAGATTATTCCATTCTTCGATTGGGAAGATCCTT
TCAAAATCGATGATGCTTATATTGGGATTCTGATTCAACGAGCACGTATT
GAGAATATCCATTACTTTGTCCCTGAAGATGATGATATGTTCTGGTTCTA
CAGCAACACCAGTCATTGCCAATACAGACCAACATCGTTGGTGTACCACA
AAGTTGGTGATGAAAAATGCATGCAACGATTGACGAGTGCTGCTTATCTG
AACACTCATAAAATTGTATACAAAATTGAACAGAAGTTAAACGAACCTAA
AACTGAAAACGAGGTTTTGTTCTCTGTGAAAATCCCGTTTGGGTTTGCAA
GGAACATGGCTATTAAGAAACCagttcggaaaagaactccatTCAAACCA
TGGAAAGGGAAGTTTCCATCGCTGTCAGATTTACCGAAAGCTGACTCACC
AAttgaaatgaagaagaaacagAGGAATGAGTATTTAAAGATGATGAAAA
GTCGACTTAGTAAAAAATAAGATAAGTATGTATTATTCGCATGGATAGAC
TGAGATGTGACAGTttcaaatcaacaaaaatgatAATTGTGTAAATTTAA
ATTCTGGTGTTTTAATTATATACAAATTAGGACATACGGAACCGCAAAAT
TGAAATGATTATATAAAAGTTAACCTACTTTTATCAGCTCTTAGTAAAAC
CGTTTATCGACTTTAGCTTTTTGAGGTCAAAAATGAGATGTTGGAACAAT
GTTTTAGAATCTTTAGTAACCAACA Run BLAST on NCBI protein sequence of TCONS_00019133-protein >TCONS_00019133-protein ID=TCONS_00019133-protein|Name=TCONS_00019133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
MMSPMSPTAMMKPTFQRSRSKVARPGFLYRRRTLLTLGFFSITALLSLFL
VIRSKHFLYRHQIQIEKLYYSNKDFAQDRNAYMETIEGKGDQNLIANNEF
LKQIRGKGEELSNTLYRLNNQQRALPYPIAEESVKKMEENIPIRYHPESK
ETKKTESKATSSELINATDILKKLEELTSKVGEISKKIDHEDKENTFSMK
KNNKASVINPSSVKKCVNSTILFLVTSHSSNRKRRAAIRNNWGFTEIFRL
FKRKFNLDYQVYFSVGLADNYEESVQIKAESEKYKDILIIDRNEDFYDLT
RRVMAGFEWAVQQCEFTYLFKIDDDIFINIPNVMQFISNTTITKHKDSLY
AGDMNIQAPVIRDSKSKYMVTYKEWPTEIYPPYCSGGGFIISRDIIKQII
PFFDWEDPFKIDDAYIGILIQRARIENIHYFVPEDDDMFWFYSNTSHCQY
RPTSLVYHKVGDEKCMQRLTSAAYLNTHKIVYKIEQKLNEPKTENEVLFS
VKIPFGFARNMAIKKPVRKRTPFKPWKGKFPSLSDLPKADSPIEMKKKQR
NEYLKMMKSRLSKK Run BLAST on NCBI transcript from alignment at sc0000319:33827..36051 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019133 ID=TCONS_00019133|Name=TCONS_00019133|organism=Clytia hemisphaerica|type=transcript|length=2225bp|location=Sequence derived from alignment at sc0000319:33827..36051 (Clytia hemisphaerica)
TGTTGGTTACTAAAGATTCTAAAACATTGTTCCAACATCTCATTTTTGAC
CTCAAAAAGCTAAAGTCGATAAACGGTTTTACTAAGAGCTGATAAAAGTA
GGTTAACTTTTATATAATCATTTCAATTTTGCGGTTCCGTATGTCCTAAT
TTGTATATAATTAAAACACCAGAATTTAAATTTACACAATTatcattttt
gttgatttgaaACTGTCACATCTCAGTCTATCCATGCGAATAATACATAC
TTATCTTATTTTTTACTAAGTCGACTTTTCATCATCTTTAAATACTCATT
CCTctgtttcttcttcatttcaaTTGGTGAGTCAGCTTTCGGTAAATCTG
ACAGCGATGGAAACTTCCCTTTCCATGGTTTGAatggagttcttttccga
actGGTTTCTTAATAGCCATGTTCCTTGCAAACCCAAACGGGATTTTCAC
AGAGAACAAAACCTCGTTTTCAGTTTTAGGTTCGTTTAACTTCTGTTCAA
TTTTGTATACAATTTTATGAGTGTTCAGATAAGCAGCACTCGTCAATCGT
TGCATGCATTTTTCATCACCAACTTTGTGGTACACCAACGATGTTGGTCT
GTATTGGCAATGACTGGTGTTGCTGTAGAACCAGAACATATCATCATCTT
CAGGGACAAAGTAATGGATATTCTCAATACGTGCTCGTTGAATCAGAATC
CCAATATAAGCATCATCGATTTTGAAAGGATCTTCCCAATCGAAGAATGG
AATAATCTGTTTGATGATATCTCTGGATATAATGAAACCGCCTCCACTAC
AGTAAGGAGGGTAGATCTCTGTCGGCCATTCTTTGTACGTCACCATGTAT
TTGCTTTTTGAATCTCGAATCACTGGTGCTTGAATATTCATATCGCCAGC
GTATAAACTGTCCTTATGTTTGGTGATAGTTGTATTCGAAATGAATTGCA
TAACATTAGGGATATTAATGAAAATGTCGTCATCGATCTTGAAGAGGTAT
GTGAACTCGCATTGTTGTACTGCCCACTCAAAACCAGCCATAACTCTGCG
TGTCAAATCGTAGAAATCTTCATTCCGATCAATAATCAAAATGTCTTTAT
ATTTCTCTGACTCTGCTTTGATTTGTACTGATTCTTCATAATTATCTGCT
AAACCAACCGAGAAATAAACTTGGTAATCCAGATTGAATTTACGTTTGAA
GAGTCGGAAGATTTCTGTGAATCCCCAGTTGTTTCGAATGGCAGCTCTAC
GTTTTCGGTTAGATGAGTGAGACGTAACAAGAAAGAGTATGGTAGAGTTG
ACACATTTCTTGACGGAGGACGGGTTAATAACTGAtgctttgttgttttt
cttcatACTGAATGTGTTCTCTTTATCCTCATGGTCAATTTTCTTGGAAA
TTTCTCCGACTTTTGAAGTTAATTCTTCCAGCTTCTTTAAAATGTCTGTA
GCATTTATCAGTTCTGAGGATGTTGCTTTCGATTCTGTCTTCTTGGTTTC
TTTGCTTTCTGGGTGATAACGAATGGGAatattttcttccattttcttCA
CTGATTCTTCAGCTATGGGATAAGGTAAAGCTCTTTGTTGATTGTTCAAC
CGATACAATGTATTGCTCAGCTCTTCGCCTTTTCCTCGAATTTGTTTCAA
GAATTCGTTATTGGCAATCAAGTTTTGGTCTCCTTTCCCTTCGATGGTCT
CCATGTAGGCATTTCTATCTTGAGCAAAATCTTTATTACTGTAATACAAT
TTCTCGATTTGAATTTGATGTCTATATAAGAAGTGCTTTGATCGAATGAC
CAGGAATAACGACAAAAGAGCAGTGATCGAAAAGAAGCCAAGCGTCAATA
AAGTGCGTCTTCTATATAAGAAACCCGGTCTGGCAACCTTCGATCTGGAA
CGTTGGAAAGTCGGCTTCATCATAGCTGTTGGACTCATTGGACTCATCAT
TTTGATTTCTCTTCTTCTATCTTTCAATTTCTCGCATCACCGTCTCTCCT
GCTCATAAGAAGCCAACTAATGGTGCCAATCATGGGTTGTCTTGTCATGA
AAAGTATTTATCTACTCTTGAACCGGATGTCAGGAGAAACAATCTTCTCA
TAATGCAACATCATCGAATAATGGAATAAAGCTAATTAAGGATACAGTTT
CTATGGAAACCAGAAATGTTACAAAAGGAACCATTACTTTCGATGTTACT
GATAAGAACTGAtctattcaatttt Coding sequence (CDS) from alignment at sc0000319:33827..36051 >TCONS_00019133 ID=TCONS_00019133|Name=TCONS_00019133|organism=Clytia hemisphaerica|type=CDS|length=1695bp|location=Sequence derived from alignment at sc0000319:33827..36051 (Clytia hemisphaerica)
TTATTTTTTACTAAGTCGACTTTTCATCATCTTTAAATACTCATTCCTct
gtttcttcttcatttcaaTTGGTGAGTCAGCTTTCGGTAAATCTGACAGC
GATGGAAACTTCCCTTTCCATGGTTTGAatggagttcttttccgaactGG
TTTCTTAATAGCCATGTTCCTTGCAAACCCAAACGGGATTTTCACAGAGA
ACAAAACCTCGTTTTCAGTTTTAGGTTCGTTTAACTTCTGTTCAATTTTG
TATACAATTTTATGAGTGTTCAGATAAGCAGCACTCGTCAATCGTTGCAT
GCATTTTTCATCACCAACTTTGTGGTACACCAACGATGTTGGTCTGTATT
GGCAATGACTGGTGTTGCTGTAGAACCAGAACATATCATCATCTTCAGGG
ACAAAGTAATGGATATTCTCAATACGTGCTCGTTGAATCAGAATCCCAAT
ATAAGCATCATCGATTTTGAAAGGATCTTCCCAATCGAAGAATGGAATAA
TCTGTTTGATGATATCTCTGGATATAATGAAACCGCCTCCACTACAGTAA
GGAGGGTAGATCTCTGTCGGCCATTCTTTGTACGTCACCATGTATTTGCT
TTTTGAATCTCGAATCACTGGTGCTTGAATATTCATATCGCCAGCGTATA
AACTGTCCTTATGTTTGGTGATAGTTGTATTCGAAATGAATTGCATAACA
TTAGGGATATTAATGAAAATGTCGTCATCGATCTTGAAGAGGTATGTGAA
CTCGCATTGTTGTACTGCCCACTCAAAACCAGCCATAACTCTGCGTGTCA
AATCGTAGAAATCTTCATTCCGATCAATAATCAAAATGTCTTTATATTTC
TCTGACTCTGCTTTGATTTGTACTGATTCTTCATAATTATCTGCTAAACC
AACCGAGAAATAAACTTGGTAATCCAGATTGAATTTACGTTTGAAGAGTC
GGAAGATTTCTGTGAATCCCCAGTTGTTTCGAATGGCAGCTCTACGTTTT
CGGTTAGATGAGTGAGACGTAACAAGAAAGAGTATGGTAGAGTTGACACA
TTTCTTGACGGAGGACGGGTTAATAACTGAtgctttgttgtttttcttca
tACTGAATGTGTTCTCTTTATCCTCATGGTCAATTTTCTTGGAAATTTCT
CCGACTTTTGAAGTTAATTCTTCCAGCTTCTTTAAAATGTCTGTAGCATT
TATCAGTTCTGAGGATGTTGCTTTCGATTCTGTCTTCTTGGTTTCTTTGC
TTTCTGGGTGATAACGAATGGGAatattttcttccattttcttCACTGAT
TCTTCAGCTATGGGATAAGGTAAAGCTCTTTGTTGATTGTTCAACCGATA
CAATGTATTGCTCAGCTCTTCGCCTTTTCCTCGAATTTGTTTCAAGAATT
CGTTATTGGCAATCAAGTTTTGGTCTCCTTTCCCTTCGATGGTCTCCATG
TAGGCATTTCTATCTTGAGCAAAATCTTTATTACTGTAATACAATTTCTC
GATTTGAATTTGATGTCTATATAAGAAGTGCTTTGATCGAATGACCAGGA
ATAACGACAAAAGAGCAGTGATCGAAAAGAAGCCAAGCGTCAATAAAGTG
CGTCTTCTATATAAGAAACCCGGTCTGGCAACCTTCGATCTGGAACGTTG
GAAAGTCGGCTTCATCATAGCTGTTGGACTCATTGGACTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019133-exon-sc0000319-1491911889:33827..36051 | TCONS_00019133-exon-sc0000319-1491911889:33827..36051 | Clytia hemisphaerica | exon |
| TCONS_00019133-exon-sc0000319-1510915933:33827..36051 | TCONS_00019133-exon-sc0000319-1510915933:33827..36051 | Clytia hemisphaerica | exon |
| TCONS_00019133-exon-sc0000319-1575043694:33827..36051 | TCONS_00019133-exon-sc0000319-1575043694:33827..36051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:33827..36051 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029044 | Nucleotide-diphossugar_trans |
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00019133 vs. Swiss-Prot (Human)
Match: B3GN4 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.181e-29 Identity = 66/229 (28.82%), Postives = 123/229 (53.71%), Query Frame = 3
Query: 882 NKASVINPSSVKKCVNSTILFLVTSHSSNRKRRAAIRNNWGFTEIFRLFKRKFNLDYQVYFSVGLADNYEESVQIKAESEKYKDILIIDRNEDFYDLTRRVMAGFEWAVQQC-EFTYLFKIDDDIFINIPNVMQFISNTTITKHKDSLYAGDMNIQAPVIRDSKSKYMVTYKEWPTEIYPPYCSGGGFIISRDIIKQIIPFFDWEDPFKIDDAYIGILIQRARIENIHY 1565
N + ++ PS K ++ +L + S + +RRAAIR+ WG R+ ++ F +G+A + + + ES ++ DIL D EDF++LT + + W V C + ++ K DDD+F+++PNV++F+ + L GD+ QA R++K KY + + YPPY GGG+++SR ++++ + + F IDD ++G+ ++R + +H+
Sbjct: 104 NFSILLEPSGCSK--DTFLLLAIKSQPGHVERRAAIRSTWG-----RVGGWARGRQLKLVFLLGVAGSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLDGWDPAQ---DLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMHH 322
The following BLAST results are available for this feature:
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