TCONS_00019133-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019133-protein
Unique NameTCONS_00019133-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019133-protein ID=TCONS_00019133-protein|Name=TCONS_00019133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
MMSPMSPTAMMKPTFQRSRSKVARPGFLYRRRTLLTLGFFSITALLSLFL
VIRSKHFLYRHQIQIEKLYYSNKDFAQDRNAYMETIEGKGDQNLIANNEF
LKQIRGKGEELSNTLYRLNNQQRALPYPIAEESVKKMEENIPIRYHPESK
ETKKTESKATSSELINATDILKKLEELTSKVGEISKKIDHEDKENTFSMK
KNNKASVINPSSVKKCVNSTILFLVTSHSSNRKRRAAIRNNWGFTEIFRL
FKRKFNLDYQVYFSVGLADNYEESVQIKAESEKYKDILIIDRNEDFYDLT
RRVMAGFEWAVQQCEFTYLFKIDDDIFINIPNVMQFISNTTITKHKDSLY
AGDMNIQAPVIRDSKSKYMVTYKEWPTEIYPPYCSGGGFIISRDIIKQII
PFFDWEDPFKIDDAYIGILIQRARIENIHYFVPEDDDMFWFYSNTSHCQY
RPTSLVYHKVGDEKCMQRLTSAAYLNTHKIVYKIEQKLNEPKTENEVLFS
VKIPFGFARNMAIKKPVRKRTPFKPWKGKFPSLSDLPKADSPIEMKKKQR
NEYLKMMKSRLSKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010730XLOC_010730Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019133TCONS_00019133Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 174..194
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 265..475
e-value: 2.8E-5
score: 23.2
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 282..427
IPR002659Glycosyl transferase, family 31PFAMPF01762Galactosyl_Tcoord: 233..429
e-value: 9.7E-39
score: 133.1

Blast
[Close]
BLAST of TCONS_00019133-protein vs. Swiss-Prot (Human)
Match: B3GN4 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.301e-30
Identity = 66/229 (28.82%), Postives = 123/229 (53.71%), Query Frame = 0 
Query:  203 NKASVINPSSVKKCVNSTILFLVTSHSSNRKRRAAIRNNWGFTEIFRLFKRKFNLDYQVYFSVGLADNYEESVQIKAESEKYKDILIIDRNEDFYDLTRRVMAGFEWAVQQC-EFTYLFKIDDDIFINIPNVMQFISNTTITKHKDSLYAGDMNIQAPVIRDSKSKYMVTYKEWPTEIYPPYCSGGGFIISRDIIKQIIPFFDWEDPFKIDDAYIGILIQRARIENIHY 430
            N + ++ PS   K  ++ +L  + S   + +RRAAIR+ WG     R+         ++ F +G+A +   +  +  ES ++ DIL  D  EDF++LT + +    W V  C +  ++ K DDD+F+++PNV++F+      +    L  GD+  QA   R++K KY +    +    YPPY  GGG+++SR  ++++    +  + F IDD ++G+ ++R  +  +H+
Sbjct:  104 NFSILLEPSGCSK--DTFLLLAIKSQPGHVERRAAIRSTWG-----RVGGWARGRQLKLVFLLGVAGSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLDGWDPAQ---DLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMHH 322
The following BLAST results are available for this feature:
BLAST of TCONS_00019133-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GN42.301e-3028.82N-acetyllactosaminide beta-1,3-N-acetylglucosaminy... [more]
back to top