TCONS_00019127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019127
Unique NameTCONS_00019127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019127 ID=TCONS_00019127|Name=TCONS_00019127|organism=Clytia hemisphaerica|type=transcript|length=848bp
AACGGACCTAACCTATTAGTTTTATTTATGTTTTGGTTTTACttgtataa
acaaaaaattaagaaaagacAAGATGTCAACATTAGATGAAGCTGATGAA
ATTCTTGATGGAAGTGAAGATGAAATTGAAGTTACCGCTAAAGATGTTTA
CGAGAAATTACTGAAAGTTTGGTTGAATGAAAAATTATCGGCAGAACTTT
TACCACATCATGATGAACTTGTTGAATGTATGATGGGACAAATCAAAGAA
ATTGAAAGCTCACTTTCATCAAGagacaaaaatcttaaaacatCCTTGCA
GAAAATTGAGCTGGAGAGAGTGAAATTTGTGATATCCAGCTACCTCAGAG
AAAGACTAAAAAAgATTGAGAATAATGTAGTTCACATTTTGGCGGAAGAG
GCATCTATGGAACAACCGAGGATGTCACCAGAAGAGATGCAATTCGCAAA
AGCTTTTTCAGAGAACCTGGAGAATCACTTTGAACAACTAGCTTTACAAC
AAATGCCAGCAAACATGCAATCACTGGACAAGAAAAAGAACATTCCAAAG
CCAAACCTGGAATCATTTGTATTTATCAAAGTCCTTGAAAATGTGGAACA
AGTAACTCTTGATCCGGAGGAAGATCCTGTCGATTTAGATGAAGGCTCAC
AACATATCGTCCGATATAAAACGATTGCTCCTTATATACAAACTGAACAA
GTTGTGTTGATCTGATCCTTTTTGGATGGATTATTATTCCATCTCCTTTG
TACATAATCTTTCCTATGGTTTTTAAATATTATACTCATCTTTTGTACAA
TTCATATTTATAGTAAATAATGGCAATAATATATCAATGTTAGTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00019127-protein

>TCONS_00019127-protein ID=TCONS_00019127-protein|Name=TCONS_00019127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MSTLDEADEILDGSEDEIEVTAKDVYEKLLKVWLNEKLSAELLPHHDELV
ECMMGQIKEIESSLSSRDKNLKTSLQKIELERVKFVISSYLRERLKKIEN
NVVHILAEEASMEQPRMSPEEMQFAKAFSENLENHFEQLALQQMPANMQS
LDKKKNIPKPNLESFVFIKVLENVEQVTLDPEEDPVDLDEGSQHIVRYKT
IAPYIQTEQVVLI
Run BLAST on NCBI

transcript from alignment at sc0000319:276463..283172-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019127 ID=TCONS_00019127|Name=TCONS_00019127|organism=Clytia hemisphaerica|type=transcript|length=6710bp|location=Sequence derived from alignment at sc0000319:276463..283172- (Clytia hemisphaerica)
AACGGACCTAACCTATTAGTTTTATTTATGTTTTGGTTTTACTTGTATAA
ACAAAAAATTAAGAAAAGACAAGATGTCAACATTAGATGAAGCTGATGAA
ATTCTTGATGGAAGTGAAGATGAAATTGAAGTTACCGCTAAAGATGTTTA
CGAGAAATTACTGAAAGTTTGGTTGAATGAAAAATTATCGGCAGAACTTT
TACCACATCATGATGAACTTGTTGAATGTATGATGGGACAAATCAAAGAA
ATTGTGAGTCTGATTGTTTTTTTTTATCTTGGGAGCGAGTAAGGATTTTA
AAGATGTGTTGTTTCTGGTTGTTTAGAAAAATATTTTACCTGAGATTGAT
TGTATAAAGAACATTATTTCTTCTCATTGATTAAAAGCTATAATGTAACT
TTATCAAATTTTGATTTACCATTTATAATTATCATAATGATTAGTACTAA
TTAAAATCAAATAACAAAAGAATTGTAAACGTAACCATATTTCGTCGTCC
ACATGACTAAAGGTTCAATCTCAAAATAACTGTCTTCGAAAAATTGGAAA
TCTTGCAATTCTTTTCTGCCTTTGAGATTGCCCTTTTTGTCATATGAAAA
CATTGACTATTCCTCTACTTAAAAAAAGGGCAATCTCAATCTCAAAGATG
ACCACCACAGTAAAATTTTAAATTTTGAGATTTATGTAACCTTTTGTCAT
GTGAACGACGATTTGATAATGGTCAATAAGTTTGCTTTAAAGTATTAAAA
TAAACAATGATCTTTAAAGTAGGAGGCTGAAGCTTCAATCATATAAAGAA
GATCATTTTTGATATTTGCACTTCAACCCCCAGCTATTCCTTTGCATGAA
AGTTCTTGGGTTTATGTCAAAATTCAAATGCTATCTATTTTTCTCAGGAA
AGCTCACTTTCATCAAGAGACAAAAATCTTAAAACATCCTTGCAGAAAAT
TGAGGTATCTAATATTACTAAGTGTCTTCATATCGTATAATGGACATTGT
TTTTTTCGACTGTTTGTTTTAATTCCTTTTCTAATATTTTTCCATTGTAA
GCATTTATGTTTTTCCCTATATTTGTTCTTGCAACTTTTTTATAGCTGGA
GAGAGTGAAATTTGTGATATCCAGCTACCTCAGAGAAAGACTAAAAAAGG
TTTGAGAACATTTTTACACCAAATAATCTATTGAGAAAATCCTATGATAT
ACTGATGTATTGCGTGGGGAAGGGGAGGGGGCTTTGGTGATATACCTCAA
ATACCTGTTCATCCACGAATAATGAAAATAATAGTTTATTGAAGTGTCAA
AAGCTTCAACCATTCTTGAGCATGAAACGAGACTCTACGAATACAATGAT
ATTTAAGTCATAAGTCAAACTATCAAATTATATAAATCTAAGCAATTCTA
AATCCTTTCAACAACCTGCATAGTGGTCACCCCCCCCCCCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCC
CCTGAAAAAGGGGGGTTTTAGAATTTTACTGAAGTGGGTGCTTGTTAAAA
TTTCTGATAAGAGGTGGCTTGGGCATAAAGGGGTGAATTTTTTAAAGGTG
TTTTTGGAAGTTTTCAAATGTTTTCCCACTCATTTTTTAATTTCTCAAAA
ATTATGGTATTTTCGTTCATTTTTTCTGTTGAAAAATTTATTTCTGCCCT
GTTCTGCCAACAGACAGATTCATGTTATGGTATTCTTCATTTTAATAACC
TTTGAAATATGTGACTTCCCAAGCGATTTAAAGTACCTGAAAATCAGACC
GGTCTTGGTCCGGTATTACGAGCGGTCTAGTAGCGGTCAAATTTCTGTTT
TAGATCGGCCTCCAGACCTTCTAGAAATGTGATCTATAACGGTCCTGACC
GCTTCTAGACGCTCGTGACCGCTCGTTAGACCGGTCCTGACCGCTCGTTG
GACCGGTCCAGGCCGTTCATTAGACCGGTACAGGCCGCTAGTTAGGGATT
TTTAGTAACGATTACATAAAAAAATTGCTGTAAAAGGATGTCAAACGGGC
GATCGGGGCCGATCTGGGACCGGACGCTTCGCAGCGGCAGCGAAATTAAC
TAAACTTGTAGCGGTCTTTTGATAAATTTTTACCGGTCATTTACCGGCCC
TTAAAAGACCGTCTAAAGACCTGTCCAATTTTCAGGTACTTTAAATTGCT
TGGGGAGTCACATATACTTATAGATTGTAAGAGTTTGTGTGTAAAAGTCA
AAAAAAGAGGAACTTAAGCCTGGGAAGAAGAGGGTGTGGAATTCAAGCCT
TGGAAAAAGAGGGAGGGTTGAGAAATTTTTATTTTGAAGAGGGGGCTTGA
GCTAAAACAGGGGGTGCCATTTTCAGGGGGGGCCATTTTCAGGGGGCCAT
TTTCAGGGGGGGCTTGATACCCAACCCCTCTGCCCACTATGAACCCACAC
AAATATTTTCTTGAAAAGTATACCTTGTTATTTATAATCAAAATCATGAA
TAAATTAAAAAGAATTAAAATCCTTTAATATATATTATAATATTTCACAA
TTTTAGATTGAGAATAATGTAGTTCACATTTTGGCGGAAGAGGCATCTAT
GGAACAACCGAGGATGTCACCAGAAGAGATGCAATTCGCAAAAGCGTAAA
CTTTGTTTCTTAAAGATTTATTAAAATTAAAAAAATTAAAATTAGGTTAA
GAGTGATATTATTTACTTTCGTTTTCGTATTGCTTCTTCATATTTTGTTT
GATGTTCAGTTTTTCAGAGAACCTGGAGAATCACTTTGAACAACTAGCTT
TACAACAAATGCCAGCAAACATGCAATCACTGGACAAGAAAAAGAACAGT
AAGAAATCTTCCGAACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTT
TCATTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGT
ATCATTGGAAAGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAAGAGTGCACACTTATCGTGAATAGACTTTAG
TAGGTTTGAAGTTCAAAAGACAAGATTTGATGTCAAATCACAGTAGAGAT
GGCAGTTAGTTGATCTTAAAGTGACTATATTTCTTTGTGTGTTTTATTAA
AAGAGTTGTTGTAATGTTTTGCTCAGAACTTCATGCTCTATCAAAAGGTA
CCAATCATTTTCGTTTATTTTGGCTTTTGAAAATAAGCTATTTCTCTACC
CCTTATTGTTTCCCCTGCAGTTTTGCCTATGGCGTCACTATTTTGGTTAC
AAAAAGTTTTCCCGGGCCTAATCCCTGTCTTCCCTCTCAAAAAATATCTT
ATAATATACTGTTCTTTTAAAAATATATGCTCAACTCCCTGGATATCCTC
TCTTATAAAGATGATTACCCCCTTGATATCATATCTTTTACTTGAAAAGA
CACTTTTCCCCTGGATATCCGCTCCCTTGTAAATATTTAATCCACTTTTG
AACAAAAATCGTTAACCCCGTGGATATCCGATATCCTCAACAGGGGGAGC
ACAGACTATTTCTGGAAAAGCCCAACAGACTAAAAATGGTTAGGTCATAA
AAAAGATGTCACCGGAACCCCAGGCTTGGCCCTCTACTAAACCATCTTAA
TGTAAATGATCATTCTGATCTTCAATNGGAACCCCAGGCTTGGCCCCCTA
CTAAACCATCTTAATGTAAATGATCATTCTGATCTTCGATTGTTTGTGTG
TTCATTGATTAAAATTAAAAAATCATCTGTTTTGTATTTAGTTCCAAAGC
CAAACCTGGAATCATTTGTATTTATCAAAGTCCTTGAAAATGTGGAACAA
GTAACTCTTGATCCGGAGTAAGTACAAACCATGTTTATTGACCGGTATCA
GGTGCGCCACAAAAAAGTTTCTCTCTTTAAAGTGAATTTTGTAATTGTTT
TGAAACTTTTTTGTGGCGCACCTGGTATAACCTACCGACCCTTTAGAAAA
ACTTCATATTGATAGCTTTTGAATTGTTACTCACACCGGGCACCCATTTT
CTACCTAAGCAATCTCCCTCCCAAGGGCGCCTTGATCCAATTTAACAATT
TTTGTTACAGATTTTTTATTTGTTTTCTAGGGAAGATCCTGTCGATTTAG
ATGAAGGCTCACAACATATCGTCCGATATAAAACGATTGCTCCTTATATA
CAAACTGAACAAGTTGTGTTGATCTGATCCTTTTTGGATGGATTATTATT
CCATCTCCTTTGTACATAATCTTTCCTATGGTTTTTAAATATTATACTCA
TCTTTTGTACAATTCATATTTATAGTAAATAATGGCAATAATATATCAAT
GTTAGTCAAT

Coding sequence (CDS) from alignment at sc0000319:276463..283172-

>TCONS_00019127 ID=TCONS_00019127|Name=TCONS_00019127|organism=Clytia hemisphaerica|type=CDS|length=4494bp|location=Sequence derived from alignment at sc0000319:276463..283172- (Clytia hemisphaerica)
GGAAGATCCTGTCGATTTAGATGAAGGCTCACAACATATCGTCCGATATA
AAACGATTGCTCCTTATATACAAACTGAACAAGTTGTGTTGATCTGATTC
CAAAGCCAAACCTGGAATCATTTGTATTTATCAAAGTCCTTGAAAATGTG
GAACAAGTAACTCTTGATCCGGATTTTTCAGAGAACCTGGAGAATCACTT
TGAACAACTAGCTTTACAACAAATGCCAGCAAACATGCAATCACTGGACA
AGAAAAAGAACAATTGAGAATAATGTAGTTCACATTTTGGCGGAAGAGGC
ATCTATGGAACAACCGAGGATGTCACCAGAAGAGATGCAATTCGCAAAAG
CCTGGAGAGAGTGAAATTTGTGATATCCAGCTACCTCAGAGAAAGACTAA
AAAAGGAAAGCTCACTTTCATCAAGAGACAAAAATCTTAAAACATCCTTG
CAGAAAATTGAGATGTCAACATTAGATGAAGCTGATGAAATTCTTGATGG
AAGTGAAGATGAAATTGAAGTTACCGCTAAAGATGTTTACGAGAAATTAC
TGAAAGTTTGGTTGAATGAAAAATTATCGGCAGAACTTTTACCACATCAT
GATGAACTTGTTGAATGTATGATGGGACAAATCAAAGAAATTGGAAGATC
CTGTCGATTTAGATGAAGGCTCACAACATATCGTCCGATATAAAACGATT
GCTCCTTATATACAAACTGAACAAGTTGTGTTGATCTGATTCCAAAGCCA
AACCTGGAATCATTTGTATTTATCAAAGTCCTTGAAAATGTGGAACAAGT
AACTCTTGATCCGGATTTTTCAGAGAACCTGGAGAATCACTTTGAACAAC
TAGCTTTACAACAAATGCCAGCAAACATGCAATCACTGGACAAGAAAAAG
AACAATTGAGAATAATGTAGTTCACATTTTGGCGGAAGAGGCATCTATGG
AACAACCGAGGATGTCACCAGAAGAGATGCAATTCGCAAAAGCCTGGAGA
GAGTGAAATTTGTGATATCCAGCTACCTCAGAGAAAGACTAAAAAAGGAA
AGCTCACTTTCATCAAGAGACAAAAATCTTAAAACATCCTTGCAGAAAAT
TGAGATGTCAACATTAGATGAAGCTGATGAAATTCTTGATGGAAGTGAAG
ATGAAATTGAAGTTACCGCTAAAGATGTTTACGAGAAATTACTGAAAGTT
TGGTTGAATGAAAAATTATCGGCAGAACTTTTACCACATCATGATGAACT
TGTTGAATGTATGATGGGACAAATCAAAGAAATTGGAAGATCCTGTCGAT
TTAGATGAAGGCTCACAACATATCGTCCGATATAAAACGATTGCTCCTTA
TATACAAACTGAACAAGTTGTGTTGATCTGATTCCAAAGCCAAACCTGGA
ATCATTTGTATTTATCAAAGTCCTTGAAAATGTGGAACAAGTAACTCTTG
ATCCGGATTTTTCAGAGAACCTGGAGAATCACTTTGAACAACTAGCTTTA
CAACAAATGCCAGCAAACATGCAATCACTGGACAAGAAAAAGAACAATTG
AGAATAATGTAGTTCACATTTTGGCGGAAGAGGCATCTATGGAACAACCG
AGGATGTCACCAGAAGAGATGCAATTCGCAAAAGCCTGGAGAGAGTGAAA
TTTGTGATATCCAGCTACCTCAGAGAAAGACTAAAAAAGGAAAGCTCACT
TTCATCAAGAGACAAAAATCTTAAAACATCCTTGCAGAAAATTGAGATGT
CAACATTAGATGAAGCTGATGAAATTCTTGATGGAAGTGAAGATGAAATT
GAAGTTACCGCTAAAGATGTTTACGAGAAATTACTGAAAGTTTGGTTGAA
TGAAAAATTATCGGCAGAACTTTTACCACATCATGATGAACTTGTTGAAT
GTATGATGGGACAAATCAAAGAAATTGGAAGATCCTGTCGATTTAGATGA
AGGCTCACAACATATCGTCCGATATAAAACGATTGCTCCTTATATACAAA
CTGAACAAGTTGTGTTGATCTGATTCCAAAGCCAAACCTGGAATCATTTG
TATTTATCAAAGTCCTTGAAAATGTGGAACAAGTAACTCTTGATCCGGAT
TTTTCAGAGAACCTGGAGAATCACTTTGAACAACTAGCTTTACAACAAAT
GCCAGCAAACATGCAATCACTGGACAAGAAAAAGAACAATTGAGAATAAT
GTAGTTCACATTTTGGCGGAAGAGGCATCTATGGAACAACCGAGGATGTC
ACCAGAAGAGATGCAATTCGCAAAAGCCTGGAGAGAGTGAAATTTGTGAT
ATCCAGCTACCTCAGAGAAAGACTAAAAAAGGAAAGCTCACTTTCATCAA
GAGACAAAAATCTTAAAACATCCTTGCAGAAAATTGAGATGTCAACATTA
GATGAAGCTGATGAAATTCTTGATGGAAGTGAAGATGAAATTGAAGTTAC
CGCTAAAGATGTTTACGAGAAATTACTGAAAGTTTGGTTGAATGAAAAAT
TATCGGCAGAACTTTTACCACATCATGATGAACTTGTTGAATGTATGATG
GGACAAATCAAAGAAATTGGAAGATCCTGTCGATTTAGATGAAGGCTCAC
AACATATCGTCCGATATAAAACGATTGCTCCTTATATACAAACTGAACAA
GTTGTGTTGATCTGATTCCAAAGCCAAACCTGGAATCATTTGTATTTATC
AAAGTCCTTGAAAATGTGGAACAAGTAACTCTTGATCCGGATTTTTCAGA
GAACCTGGAGAATCACTTTGAACAACTAGCTTTACAACAAATGCCAGCAA
ACATGCAATCACTGGACAAGAAAAAGAACAATTGAGAATAATGTAGTTCA
CATTTTGGCGGAAGAGGCATCTATGGAACAACCGAGGATGTCACCAGAAG
AGATGCAATTCGCAAAAGCCTGGAGAGAGTGAAATTTGTGATATCCAGCT
ACCTCAGAGAAAGACTAAAAAAGGAAAGCTCACTTTCATCAAGAGACAAA
AATCTTAAAACATCCTTGCAGAAAATTGAGATGTCAACATTAGATGAAGC
TGATGAAATTCTTGATGGAAGTGAAGATGAAATTGAAGTTACCGCTAAAG
ATGTTTACGAGAAATTACTGAAAGTTTGGTTGAATGAAAAATTATCGGCA
GAACTTTTACCACATCATGATGAACTTGTTGAATGTATGATGGGACAAAT
CAAAGAAATTGGAAGATCCTGTCGATTTAGATGAAGGCTCACAACATATC
GTCCGATATAAAACGATTGCTCCTTATATACAAACTGAACAAGTTGTGTT
GATCTGATTCCAAAGCCAAACCTGGAATCATTTGTATTTATCAAAGTCCT
TGAAAATGTGGAACAAGTAACTCTTGATCCGGATTTTTCAGAGAACCTGG
AGAATCACTTTGAACAACTAGCTTTACAACAAATGCCAGCAAACATGCAA
TCACTGGACAAGAAAAAGAACAATTGAGAATAATGTAGTTCACATTTTGG
CGGAAGAGGCATCTATGGAACAACCGAGGATGTCACCAGAAGAGATGCAA
TTCGCAAAAGCCTGGAGAGAGTGAAATTTGTGATATCCAGCTACCTCAGA
GAAAGACTAAAAAAGGAAAGCTCACTTTCATCAAGAGACAAAAATCTTAA
AACATCCTTGCAGAAAATTGAGATGTCAACATTAGATGAAGCTGATGAAA
TTCTTGATGGAAGTGAAGATGAAATTGAAGTTACCGCTAAAGATGTTTAC
GAGAAATTACTGAAAGTTTGGTTGAATGAAAAATTATCGGCAGAACTTTT
ACCACATCATGATGAACTTGTTGAATGTATGATGGGACAAATCAAAGAAA
TTGGAAGATCCTGTCGATTTAGATGAAGGCTCACAACATATCGTCCGATA
TAAAACGATTGCTCCTTATATACAAACTGAACAAGTTGTGTTGATCTGAT
TCCAAAGCCAAACCTGGAATCATTTGTATTTATCAAAGTCCTTGAAAATG
TGGAACAAGTAACTCTTGATCCGGATTTTTCAGAGAACCTGGAGAATCAC
TTTGAACAACTAGCTTTACAACAAATGCCAGCAAACATGCAATCACTGGA
CAAGAAAAAGAACAATTGAGAATAATGTAGTTCACATTTTGGCGGAAGAG
GCATCTATGGAACAACCGAGGATGTCACCAGAAGAGATGCAATTCGCAAA
AGCCTGGAGAGAGTGAAATTTGTGATATCCAGCTACCTCAGAGAAAGACT
AAAAAAGGAAAGCTCACTTTCATCAAGAGACAAAAATCTTAAAACATCCT
TGCAGAAAATTGAGATGTCAACATTAGATGAAGCTGATGAAATTCTTGAT
GGAAGTGAAGATGAAATTGAAGTTACCGCTAAAGATGTTTACGAGAAATT
ACTGAAAGTTTGGTTGAATGAAAAATTATCGGCAGAACTTTTACCACATC
ATGATGAACTTGTTGAATGTATGATGGGACAAATCAAAGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010725XLOC_010725Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019127-proteinTCONS_00019127-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019127-exon-sc0000319-1575043694:282920..283172TCONS_00019127-exon-sc0000319-1575043694:282920..283172Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1575043694:282219..282275TCONS_00019127-exon-sc0000319-1575043694:282219..282275Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1575043694:282024..282077TCONS_00019127-exon-sc0000319-1575043694:282024..282077Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1575043694:280528..280616TCONS_00019127-exon-sc0000319-1575043694:280528..280616Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1575043694:280325..280413TCONS_00019127-exon-sc0000319-1575043694:280325..280413Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1575043694:276956..277031TCONS_00019127-exon-sc0000319-1575043694:276956..277031Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1575043694:276463..276692TCONS_00019127-exon-sc0000319-1575043694:276463..276692Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1510915933:282920..283172TCONS_00019127-exon-sc0000319-1510915933:282920..283172Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1510915933:282219..282275TCONS_00019127-exon-sc0000319-1510915933:282219..282275Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1510915933:282024..282077TCONS_00019127-exon-sc0000319-1510915933:282024..282077Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1510915933:280528..280616TCONS_00019127-exon-sc0000319-1510915933:280528..280616Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1510915933:280325..280413TCONS_00019127-exon-sc0000319-1510915933:280325..280413Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1510915933:276956..277031TCONS_00019127-exon-sc0000319-1510915933:276956..277031Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1510915933:276463..276692TCONS_00019127-exon-sc0000319-1510915933:276463..276692Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1491911889:282920..283172TCONS_00019127-exon-sc0000319-1491911889:282920..283172Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1491911889:282219..282275TCONS_00019127-exon-sc0000319-1491911889:282219..282275Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1491911889:282024..282077TCONS_00019127-exon-sc0000319-1491911889:282024..282077Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1491911889:280528..280616TCONS_00019127-exon-sc0000319-1491911889:280528..280616Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1491911889:280325..280413TCONS_00019127-exon-sc0000319-1491911889:280325..280413Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1491911889:276956..277031TCONS_00019127-exon-sc0000319-1491911889:276956..277031Clytia hemisphaericaexon
TCONS_00019127-exon-sc0000319-1491911889:276463..276692TCONS_00019127-exon-sc0000319-1491911889:276463..276692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:276463..283172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
134.027	120.086	53.0567	42.1904	68.4337	45.9124	42.9712	46.8448	40.0958	28.1069	34.65	32.5393	26.8815	22.7398	25.3788	22.4311	47.681	43.2752	20.3618	18.4662	41.3341	37.2329	77.6003	71.0129	43.575	47.0294	15.5305	12.5122	27.9155	32.7109
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR031633SLD5_C
IPR008591GINS_Sld5
IPR021151GINS_A
Vocabulary: Biological Process
TermDefinition
GO:0006261DNA-dependent DNA replication
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
Blast
[Close]
BLAST of TCONS_00019127 vs. Swiss-Prot (Human)
Match: SLD5 (DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.176e-46
Identity = 86/211 (40.76%), Postives = 142/211 (67.30%), Query Frame = 2 
Query:  107 DGSEDEIEVTAKDVYEKLLKVWLNEKLSAELLPHHDELVECMMGQIKEIESSLS-SRDKNLKTSLQKIELERVKFVISSYLRERLKKIENNVVHILAEEASM---EQPRMSPEEMQFAKAFSENLENHFEQLALQQMPANMQSLDKKKNIPKPNLESFVFIKVLEN-----VEQVTXXXXXXXXXXXXGSQHIVRYKTIAPYIQTEQVVLI 712
            DG  +E+ +T  ++ E+L + W+NEK + ELL    E+VEC+M Q++ +E +L  ++ ++LK S+ ++E+ER+++V+SSYLR RL KIE    H+L +E +    E   +SPEE+ FA+ F  N E++ + +AL+ MP N+Q +D  + +PKP+L+S+VF++V E      VE  T +  +  +DL++GSQH++RYKTIAP + +  V LI
Sbjct:   13 DGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223
The following BLAST results are available for this feature:
BLAST of TCONS_00019127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLD51.176e-4640.76DNA replication complex GINS protein SLD5 OS=Homo ... [more]
back to top