TCONS_00019127-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019127-protein
Unique NameTCONS_00019127-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019127-protein ID=TCONS_00019127-protein|Name=TCONS_00019127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MSTLDEADEILDGSEDEIEVTAKDVYEKLLKVWLNEKLSAELLPHHDELV
ECMMGQIKEIESSLSSRDKNLKTSLQKIELERVKFVISSYLRERLKKIEN
NVVHILAEEASMEQPRMSPEEMQFAKAFSENLENHFEQLALQQMPANMQS
LDKKKNIPKPNLESFVFIKVLENVEQVTLDPEEDPVDLDEGSQHIVRYKT
IAPYIQTEQVVLI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010725XLOC_010725Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019127TCONS_00019127Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031633SLD5_C
IPR008591GINS_Sld5
IPR021151GINS_A
Vocabulary: Biological Process
TermDefinition
GO:0006261DNA-dependent DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031633DNA replication complex GINS protein SLD5, C-terminalPFAMPF16922SLD5_Ccoord: 160..213
e-value: 2.1E-15
score: 56.5
IPR008591GINS complex subunit Sld5PIRSFPIRSF007764GINS_Sld5coord: 1..213
e-value: 2.0E-57
score: 192.4
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 33..121
e-value: 7.9E-5
score: 23.0
IPR021151GINS subunit, domain ASUPERFAMILY158573GINS helical bundle-likecoord: 21..155
NoneNo IPR availableCDDcd11711GINS_A_Sld5coord: 25..141
e-value: 3.85013E-37
score: 126.571
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 161..213

Blast
[Close]
BLAST of TCONS_00019127-protein vs. Swiss-Prot (Human)
Match: SLD5 (DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.356e-54
Identity = 86/211 (40.76%), Postives = 144/211 (68.25%), Query Frame = 0 
Query:   12 DGSEDEIEVTAKDVYEKLLKVWLNEKLSAELLPHHDELVECMMGQIKEIESSLS-SRDKNLKTSLQKIELERVKFVISSYLRERLKKIENNVVHILAEEASM---EQPRMSPEEMQFAKAFSENLENHFEQLALQQMPANMQSLDKKKNIPKPNLESFVFIKVLENVEQVTLDPEEDP-----VDLDEGSQHIVRYKTIAPYIQTEQVVLI 213
            DG  +E+ +T  ++ E+L + W+NEK + ELL    E+VEC+M Q++ +E +L  ++ ++LK S+ ++E+ER+++V+SSYLR RL KIE    H+L +E +    E   +SPEE+ FA+ F  N E++ + +AL+ MP N+Q +D  + +PKP+L+S+VF++V E  E + ++P+ D      +DL++GSQH++RYKTIAP + +  V LI
Sbjct:   13 DGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223
The following BLAST results are available for this feature:
BLAST of TCONS_00019127-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLD59.356e-5440.76DNA replication complex GINS protein SLD5 OS=Homo ... [more]
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