TCONS_00019063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019063
Unique NameTCONS_00019063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019063 ID=TCONS_00019063|Name=TCONS_00019063|organism=Clytia hemisphaerica|type=transcript|length=372bp
TCAATAATGCTAAAGAAGCCCTGCAATGATCATAAAATCGAAAAACGTAT
TGCGAGCCCAGTGGAGAAAACCGAAACATCAATTCTCTGCAATTTCAAAG
ACGTGTGGAGAAAACTTATCACAGAATGAACATCGTCTCATCAGAAGACA
AAGAAATAAATGGTAATAAGAAAAGGAAGTAAATATAATAACAAATTTGT
TTCATCCAAGCTAGCTGAAAGTCCTGCCGGGTCTATGAGAAAGGGGTGTC
AAAAATTCTAGTTCTTCTTCTTTGCGAGTGTTTATATAAAATATGCTGTG
TCCAGGAGCtataaaattcttcatttttaattattttctggACGGTACAT
gatcaaatatttttgattttat
Run BLAST on NCBI

transcript from alignment at sc0000317:407040..407576-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019063 ID=TCONS_00019063|Name=TCONS_00019063|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at sc0000317:407040..407576- (Clytia hemisphaerica)
TCAATAATGCTAAAGAAGCCCTGCAATGATCATGTAAGTACACTTTTTTA
GTTATTTTTGGAATAACCTGTCTAAAACACATAATTTCTTTCTTTCTTCA
AGTTATTTTCAATTTAAATAAAGATAAAGGGCAATCAATCTGTTTGATAA
TCTTGTTTTTAAGAAGTAGAGTATAATTTTATCATTTTCTCTCGACAGAA
AATCGAAAAACGTATTGCGAGCCCAGTGGAGAAAACCGAAACATCAATTC
TCTGCAATTTCAAAGACGTGTGGAGAAAACTTATCACAGAATGAACATCG
TCTCATCAGAAGACAAAGAAATAAATGGTAATAAGAAAAGGAAGTAAATA
TAATAACAAATTTGTTTCATCCAAGCTAGCTGAAAGTCCTGCCGGGTCTA
TGAGAAAGGGGTGTCAAAAATTCTAGTTCTTCTTCTTTGCGAGTGTTTAT
ATAAAATATGCTGTGTCCAGGAGCTATAAAATTCTTCATTTTTAATTATT
TTCTGGACGGTACATGATCAAATATTTTTGATTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010678XLOC_010678Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019063-exon-sc0000317-1575043694:407544..407576TCONS_00019063-exon-sc0000317-1575043694:407544..407576Clytia hemisphaericaexon
TCONS_00019063-exon-sc0000317-1575043694:407040..407378TCONS_00019063-exon-sc0000317-1575043694:407040..407378Clytia hemisphaericaexon
TCONS_00019063-exon-sc0000317-1510915933:407544..407576TCONS_00019063-exon-sc0000317-1510915933:407544..407576Clytia hemisphaericaexon
TCONS_00019063-exon-sc0000317-1510915933:407040..407378TCONS_00019063-exon-sc0000317-1510915933:407040..407378Clytia hemisphaericaexon
TCONS_00019063-exon-sc0000317-1491911889:407544..407576TCONS_00019063-exon-sc0000317-1491911889:407544..407576Clytia hemisphaericaexon
TCONS_00019063-exon-sc0000317-1491911889:407040..407378TCONS_00019063-exon-sc0000317-1491911889:407040..407378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:407040..407576 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287628	0.212248	0	0	18.8345	14.2039	4.90602	6.06651	0	0.630188	0.441027	0	0	0	0	0	0	0.334944	0	0	0.210441	0	0	0	0.467373	0	0	0	0.24158	0.246132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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