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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019046 ID=TCONS_00019046|Name=TCONS_00019046|organism=Clytia hemisphaerica|type=transcript|length=2021bpRun BLAST on NCBI transcript from alignment at sc0000317:225105..234664- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019046 ID=TCONS_00019046|Name=TCONS_00019046|organism=Clytia hemisphaerica|type=transcript|length=9560bp|location=Sequence derived from alignment at sc0000317:225105..234664- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019046 vs. Swiss-Prot (Human)
Match: CSMD1 (CUB and sushi domain-containing protein 1 OS=Homo sapiens GN=CSMD1 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.358e-27 Identity = 92/296 (31.08%), Postives = 136/296 (45.95%), Query Frame = 2
Query: 83 SCKDGYFLY-------TGNQTLNKVEERTAIEYHSCFGNPCPVVDYLDNGYILNYGNRYPVELEYRCNPGYVLDRVVKPKCLKNGTWSEKFPKCVESGCLMPKDVSNSIQSVNGTIHNSTGRYAEGSIVEYQCDHGYERTSGNLLQECVQDAIKFYWSGKSPVCERVSCGVPQSPKNGYAQTNGTQY--KDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVCAPSPCPDPGTPLNGARNG------TVALGQTVRYTCTKQGYKLFGDAERTCVYLGQKTGNGWTGALPVCKDV 925
SC GY+L N T N +ER SC C + + NG + Y + CN GY L +CL NG WS +C+ C P + N S +G + T V YQC+ G+ R G ++ C+QD WSG++PVC ++CG P +P +G+ TNG+++ D F C+ GY + G ++ C++NG+WS P C C DPG N R+G + G ++ Y C K+G+ L G + TC+ G W +LP C +
Sbjct: 2588 SCSPGYYLEGWRLLRCQANGTWNIGDERP-----SCRVISCGSLSFPPNGNKIGTLTVYGATAIFTCNTGYTLVGSHVRECLANGLWSGSETRCLAGHCGSPDPIVNGHISGDGFSYRDT--------VVYQCNPGF-RLVGTSVRICLQD---HKWSGQTPVCVPITCGHPGNPAHGF--TNGSEFNLNDVVNFTCNTGYLLQGVSRAQCRSNGQWSSPLPTCRVVNCSDPGFVENAIRHGQQNFPESFEYGMSILYHC-KKGFHLLGSSALTCMANGL-----WDRSLPKCLAI 2858 HSP 2 Score: 118.627 bits (296), Expect = 3.295e-27 Identity = 77/229 (33.62%), Postives = 108/229 (47.16%), Query Frame = 2
Query: 200 LDNGYILNYGNRYPVELEYRCNPGYVLDRVVKP--KCLKNGTWSEKFPKCVESGCLMPKDVSNSIQSVNGTIHNSTGRYAEGSIVEYQCDHGYERTSGNLLQECVQDAIKFYWSGKSPVCERVSCGVPQSPKNGYAQTNGTQYKDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVC---APSPCPDPGTPLNGARNGTVA--LGQTVRYTCTKQGYKLFGDAERTCV 865
L NG + + Y+CNPGYV++ V +C K+G W+ P C C P V NGT+ S R+ GS + Y C GY+ + +L C + W G+ P C V CG P P G YK F C + ++G ++ CQA+G WSG P C A + CPDPGTP G +N + +G TV + C ++GY + G RTC+
Sbjct: 3044 LANGIQFGTDFTFNKTVSYQCNPGYVMEAVTSATIRCTKDGRWNPSKPVCKAVLCPQPPPVQ------NGTVEGSDFRW--GSSISYSCMDGYQLSHSAIL-SCEGRGV---WKGEIPQCLPVFCGDPGIPAEGRLSGKSFTYKSEVFFQCKSPFILVGSSRRVCQADGTWSGIQPTCIDPAHNTCPDPGTPHFGIQNSSRGYEVGSTVFFRC-RKGYHIQGSTTRTCL 3259 HSP 3 Score: 114.005 bits (284), Expect = 8.283e-26 Identity = 91/299 (30.43%), Postives = 135/299 (45.15%), Query Frame = 2
Query: 77 NCSCKDGYFLYTGNQTLNKVEERTAIEYHSCFGNPCPVVDYLDNGYILN---YGNR-------YPVELEYRCNPGYVLDRVVKPKCLKNGTWSEKFPKCVESGCLMPKDVSNSIQSVNGTIHNSTGRYAEGSIVEYQCDHGYERTSGNLLQECVQDAIKFYWSGKSPVCERVS---CGVPQSPKNGYAQTNGTQYKDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVCAPSPCPDPGTPLNG--ARNGTVALGQTVRYTCTKQGYKLFGDAERTCVYLGQKTGNG-WTGALPVCKDV 925
N +C GY L Q +++ + R+ ++ S C VV+ D G++ N +G + Y + + Y C G+ L C+ NG W PKC+ C P +N++ + G + + G++V Y C G E GN + C +D+ +WSG P C + CG P +P +G + + K F C G+Q+ G + TC NG WSG PVC C +PGTP NG + + +V Y C +GYK G R C T NG WTG P C +
Sbjct: 2762 NFTCNTGYLL----QGVSRAQCRSNGQWSSPLPT-CRVVNCSDPGFVENAIRHGQQNFPESFEYGMSILYHCKKGFHLLGSSALTCMANGLWDRSLPKCLAISCGHPGVPANAV--LTGEL------FTYGAVVHYSC-RGSESLIGNDTRVCQEDS---HWSGALPHCTGNNPGFCGDPGTPAHGSRLGDDFKTKSLLRFSCEMGHQLRGSPERTCLLNGSWSGLQPVCEAVSCGNPGTPTNGMIVSSDGILFSSSVIYAC-WEGYKTSGLMTRHC------TANGTWTGTAPDCTII 3036 HSP 4 Score: 106.686 bits (265), Expect = 1.686e-23 Identity = 76/256 (29.69%), Postives = 117/256 (45.70%), Query Frame = 2
Query: 230 NRYPVELEYRCNPGYVLDRVVKPKCLKNGTWS--EKFPKC--VESGCLMPKDVSNSIQSVNGTIHNSTGRYAEGSIVEYQCDHGYERTSGNLLQECVQDAIKFYWSGKSPVCERVSCGVPQSPKNGYAQTNGTQYKDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVCAPSPCPDPGTPLNGARNGT-VALGQTVRYTCTKQGYKLFGDAERTCVYLGQKTGNGWTGALPVCKDV-------MKPVFKCEQQNF 961
N Y ++ C+PGY L+ +C NGTW+ ++ P C + G L N I ++ G+ + C+ GY G+ ++EC+ + + WSG C CG P NG+ +G Y+D + C+ G++++G + C + +WSG TPVC P C PG P +G NG+ L V +TC GY L G + C GQ W+ LP C+ V ++ + QQNF
Sbjct: 2579 NEYGAQVLLSCSPGYYLEGWRLLRCQANGTWNIGDERPSCRVISCGSLSFPPNGNKIGTLT----------VYGATAIFTCNTGYTLV-GSHVRECLANGL---WSGSETRCLAGHCGSPDPIVNGHISGDGFSYRDTVVYQCNPGFRLVGTSVRICLQDHKWSGQTPVCVPITCGHPGNPAHGFTNGSEFNLNDVVNFTC-NTGYLLQGVSRAQCRSNGQ-----WSSPLPTCRVVNCSDPGFVENAIRHGQQNF 2814 HSP 5 Score: 95.5153 bits (236), Expect = 5.273e-20 Identity = 71/243 (29.22%), Postives = 103/243 (42.39%), Query Frame = 2
Query: 206 NGYILNY-GNRYPVELEYRCNPGYVLDRVVKPKCLKNGTWSEKFPKCVESGCLMPKDVSNSIQSVNGTIHNSTGRYAEGSIVEYQCDHGY---ERTSGNLLQECVQDAIKFYWSGKSPVCERVSCGVPQSPKNGYAQTNGTQYKDNATFHCSGGYQMIGHNQTTCQANGEWSGFTPVCAPSPCPDPGTPLNGARNGTVALGQTVRYTCTKQGYKLFGDAERTCVYLGQKTGNGWTGALPVCKD 922
NG I++ G + + Y C GY ++ C NGTW+ P C C P ++N IQ N T V YQC+ GY TS + C +D W+ PVC+ V C P +NG + + ++ + ++ C GYQ+ +C+ G W G P C P C DPG P G +G ++ + K + L G + R C Q G W+G P C D
Sbjct: 2987 NGMIVSSDGILFSSSVIYACWEGYKTSGLMTRHCTANGTWTGTAPDCTIISCGDPGTLANGIQFGTDFTFNKT--------VSYQCNPGYVMEAVTSATI--RCTKDG---RWNPSKPVCKAVLCPQPPPVQNGTVEGSDFRWGSSISYSCMDGYQLSHSAILSCEGRGVWKGEIPQCLPVFCGDPGIPAEGRLSGKSFTYKSEVFFQCKSPFILVGSSRRVC----QADGT-WSGIQPTCID 3211 The following BLAST results are available for this feature:
BLAST of TCONS_00019046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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