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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018968 ID=TCONS_00018968|Name=TCONS_00018968|organism=Clytia hemisphaerica|type=transcript|length=1474bpRun BLAST on NCBI protein sequence of TCONS_00018968-protein >TCONS_00018968-protein ID=TCONS_00018968-protein|Name=TCONS_00018968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp MEETRQSISNPMEANEGKMFIGGLHSQTSSDSLRAYFEKYGEVKEAVVMRRun BLAST on NCBI transcript from alignment at sc0000314:139501..154137+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018968 ID=TCONS_00018968|Name=TCONS_00018968|organism=Clytia hemisphaerica|type=transcript|length=14637bp|location=Sequence derived from alignment at sc0000314:139501..154137+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000314:139501..154137+ >TCONS_00018968 ID=TCONS_00018968|Name=TCONS_00018968|organism=Clytia hemisphaerica|type=CDS|length=15456bp|location=Sequence derived from alignment at sc0000314:139501..154137+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018968 vs. Swiss-Prot (Human)
Match: MSI2H (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.149e-59 Identity = 108/227 (47.58%), Postives = 140/227 (61.67%), Query Frame = 1
Query: 280 SNPMEANEGKMFIGGLHSQTSSDSLRAYFEKYGEVKEAVVMRDTVTKRSRGFGFIVFNDLTAVDKVLEFTDCHIIDGKKVDPKRAVPKKATPGANQPFRKVFVGGLPGDVTAAELQEYFEAFGKVTECLLMQDRQTKRLRGFGFVTFENEAASKAVCDAGFHKLKGKNVECKRAQPKEVML----------LQVNLAPFQLNRSSI-YPNGIPTSPIAYGVPDYASS 927
+N + + GKMFIGGL QTS DSLR YF K+GE++E +VMRD TKRSRGFGF+ F D +VDKVL H +D K +DPK A P++A P +K+FVGGL + ++++YFE FGKV + +LM D+ T R RGFGFVTFENE + VC+ FH++ K VECK+AQPKEVM L + F L + YPN + T G P +A S
Sbjct: 13 ANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG-QPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVAT--YGRGYPGFAPS 236 The following BLAST results are available for this feature:
BLAST of TCONS_00018968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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