TCONS_00018968-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018968-protein
Unique NameTCONS_00018968-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018968-protein ID=TCONS_00018968-protein|Name=TCONS_00018968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MEETRQSISNPMEANEGKMFIGGLHSQTSSDSLRAYFEKYGEVKEAVVMR
DTVTKRSRGFGFIVFNDLTAVDKVLEFTDCHIIDGKKVDPKRAVPKKATP
GANQPFRKVFVGGLPGDVTAAELQEYFEAFGKVTECLLMQDRQTKRLRGF
GFVTFENEAASKAVCDAGFHKLKGKNVECKRAQPKEVMLLQVNLAPFQLN
RSSIYPNGIPTSPIAYGVPDYASSPQLYQQLVNWMSMGRGKAFTAQNYVT
AGPPQGFGNMPDHRRHASSQQTQGAATTQHQQAQYFNSDYNNTATTASAV
TTETPSPQNQDYHHISSGLTQTTTRPNAADMSFLSSRTTFGNDQAQIYHG
AQAASQPAFGHASLPPV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010636XLOC_010636Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018968TCONS_00018968Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 108..180
e-value: 5.9E-23
score: 92.3
coord: 18..91
e-value: 1.4E-20
score: 84.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 109..176
e-value: 8.1E-16
score: 57.5
coord: 20..88
e-value: 1.1E-14
score: 53.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 107..184
score: 16.466
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 17..100
score: 16.108
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 100..188
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 9..101
NoneNo IPR availableGENE3D3.30.70.330coord: 102..290
e-value: 5.1E-24
score: 84.0
NoneNo IPR availableGENE3D3.30.70.330coord: 1..101
e-value: 1.7E-20
score: 72.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 298..324

Blast
[Close]
BLAST of TCONS_00018968-protein vs. Swiss-Prot (Human)
Match: MSI2H (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.699e-62
Identity = 108/227 (47.58%), Postives = 140/227 (61.67%), Query Frame = 0 
Query:    9 SNPMEANEGKMFIGGLHSQTSSDSLRAYFEKYGEVKEAVVMRDTVTKRSRGFGFIVFNDLTAVDKVLEFTDCHIIDGKKVDPKRAVPKKATPGANQPFRKVFVGGLPGDVTAAELQEYFEAFGKVTECLLMQDRQTKRLRGFGFVTFENEAASKAVCDAGFHKLKGKNVECKRAQPKEVML----------LQVNLAPFQLNRSSI-YPNGIPTSPIAYGVPDYASS 224
            +N  + + GKMFIGGL  QTS DSLR YF K+GE++E +VMRD  TKRSRGFGF+ F D  +VDKVL     H +D K +DPK A P++A P      +K+FVGGL  +    ++++YFE FGKV + +LM D+ T R RGFGFVTFENE   + VC+  FH++  K VECK+AQPKEVM           L   +  F L    + YPN + T     G P +A S
Sbjct:   13 ANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG-QPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVAT--YGRGYPGFAPS 236
The following BLAST results are available for this feature:
BLAST of TCONS_00018968-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI2H1.699e-6247.58RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
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