TCONS_00018956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018956
Unique NameTCONS_00018956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length928

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018956 ID=TCONS_00018956|Name=TCONS_00018956|organism=Clytia hemisphaerica|type=transcript|length=928bp
AACAATAATATCAAAGAGAGAAGCCAAGACCCAACCAGCGAACCAAGGAA
AGCTAAAGCTTTTATGGACATGTTACTGGACCTATATGAGAAAGGGGAAA
TAGACATTGAAGGGATCCGAGAAGAGGTGGATACATTCATGTTTGAAGGC
CATGATACAACCGCATCAGGGTTAAGTTGGATTTTATACATGCTTGGTTT
GTATCCTGACATCCAACAAAAGCTACATGAGGAGATTGACCAAGTAGCTG
ATAAGGCTGGTGATTTAGTTGAAAGGATAAGAGGTATCAAGTACTTGGAG
CATGTTATTAAAGAAGGATTACGTTTACATCCACCTGTTTTGATATACGC
TCGCAAGTTGGAGAAAGATAGTAAAATTTGTGGAGTCTCCATGCCAAAGG
GAACCCAACTGGTGATCGATGCACACGCTCTGCACACCAATCCAGAGTAC
TGGGACGAACCAATGAAATTCAACCCAGACCGATTTGCTGAAGAAAAATT
CGCTAAACGTAACCCGTATTGTTACGTCCCATTTTCAGCTGGTCCGAGAA
ATTGTATTGGGCAAAAATTTGCGATGTTGAATGAGAAGATTTTATTGTAT
CACGTGATGTTGAAGTATAAAGTTGTTTCGGTACAAAAGGAGGAAGATGT
TGCTGAATGTTTTGAGATTATTCACAAATCGGAAAATGGACTAGTGGTGA
AATTGGAACACAGAAATCATACTTctgcaaaataaacacttactcTCTTG
TTTGGATTTTTCTAAATAAACTCACAGTTCATGTTTGGATGATTGTATGA
TCATTTAAAATAAACAATcataattatgaaattgttaCACTTTCGATTTA
CTAAAATGAATAAGGAGACATAGCTAGGATctgaatttagagatctttaT
ATCAGAAACACTAACAAGAAATAGGAAC
Run BLAST on NCBI

protein sequence of TCONS_00018956-protein

>TCONS_00018956-protein ID=TCONS_00018956-protein|Name=TCONS_00018956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
NNNIKERSQDPTSEPRKAKAFMDMLLDLYEKGEIDIEGIREEVDTFMFEG
HDTTASGLSWILYMLGLYPDIQQKLHEEIDQVADKAGDLVERIRGIKYLE
HVIKEGLRLHPPVLIYARKLEKDSKICGVSMPKGTQLVIDAHALHTNPEY
WDEPMKFNPDRFAEEKFAKRNPYCYVPFSAGPRNCIGQKFAMLNEKILLY
HVMLKYKVVSVQKEEDVAECFEIIHKSENGLVVKLEHRNHTSAK
Run BLAST on NCBI

transcript from alignment at sc0000313:175967..176894

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018956 ID=TCONS_00018956|Name=TCONS_00018956|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at sc0000313:175967..176894 (Clytia hemisphaerica)
GTTCCTATTTCTTGTTAGTGTTTCTGATAtaaagatctctaaattcagAT
CCTAGCTATGTCTCCTTATTCATTTTAGTAAATCGAAAGTGtaacaattt
cataattatgATTGTTTATTTTAAATGATCATACAATCATCCAAACATGA
ACTGTGAGTTTATTTAGAAAAATCCAAACAAGAgagtaagtgtttatttt
gcagAAGTATGATTTCTGTGTTCCAATTTCACCACTAGTCCATTTTCCGA
TTTGTGAATAATCTCAAAACATTCAGCAACATCTTCCTCCTTTTGTACCG
AAACAACTTTATACTTCAACATCACGTGATACAATAAAATCTTCTCATTC
AACATCGCAAATTTTTGCCCAATACAATTTCTCGGACCAGCTGAAAATGG
GACGTAACAATACGGGTTACGTTTAGCGAATTTTTCTTCAGCAAATCGGT
CTGGGTTGAATTTCATTGGTTCGTCCCAGTACTCTGGATTGGTGTGCAGA
GCGTGTGCATCGATCACCAGTTGGGTTCCCTTTGGCATGGAGACTCCACA
AATTTTACTATCTTTCTCCAACTTGCGAGCGTATATCAAAACAGGTGGAT
GTAAACGTAATCCTTCTTTAATAACATGCTCCAAGTACTTGATACCTCTT
ATCCTTTCAACTAAATCACCAGCCTTATCAGCTACTTGGTCAATCTCCTC
ATGTAGCTTTTGTTGGATGTCAGGATACAAACCAAGCATGTATAAAATCC
AACTTAACCCTGATGCGGTTGTATCATGGCCTTCAAACATGAATGTATCC
ACCTCTTCTCGGATCCCTTCAATGTCTATTTCCCCTTTCTCATATAGGTC
CAGTAACATGTCCATAAAAGCTTTAGCTTTCCTTGGTTCGCTGGTTGGGT
CTTGGCTTCTCTCTTTGATATTATTGTT

Coding sequence (CDS) from alignment at sc0000313:175967..176894

>TCONS_00018956 ID=TCONS_00018956|Name=TCONS_00018956|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000313:175967..176894 (Clytia hemisphaerica)
ttattttgcagAAGTATGATTTCTGTGTTCCAATTTCACCACTAGTCCAT
TTTCCGATTTGTGAATAATCTCAAAACATTCAGCAACATCTTCCTCCTTT
TGTACCGAAACAACTTTATACTTCAACATCACGTGATACAATAAAATCTT
CTCATTCAACATCGCAAATTTTTGCCCAATACAATTTCTCGGACCAGCTG
AAAATGGGACGTAACAATACGGGTTACGTTTAGCGAATTTTTCTTCAGCA
AATCGGTCTGGGTTGAATTTCATTGGTTCGTCCCAGTACTCTGGATTGGT
GTGCAGAGCGTGTGCATCGATCACCAGTTGGGTTCCCTTTGGCATGGAGA
CTCCACAAATTTTACTATCTTTCTCCAACTTGCGAGCGTATATCAAAACA
GGTGGATGTAAACGTAATCCTTCTTTAATAACATGCTCCAAGTACTTGAT
ACCTCTTATCCTTTCAACTAAATCACCAGCCTTATCAGCTACTTGGTCAA
TCTCCTCATGTAGCTTTTGTTGGATGTCAGGATACAAACCAAGCATGTAT
AAAATCCAACTTAACCCTGATGCGGTTGTATCATGGCCTTCAAACATGAA
TGTATCCACCTCTTCTCGGATCCCTTCAATGTCTATTTCCCCTTTCTCAT
ATAGGTCCAGTAACATGTCCATAAAAGCTTTAGCTTTCCTTGGTTCGCTG
GTTGGGTCTTGGCTTCTCTCTTTGATATTATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010626XLOC_010626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018956-exon-sc0000313-1491911889:175967..176894TCONS_00018956-exon-sc0000313-1491911889:175967..176894Clytia hemisphaericaexon
TCONS_00018956-exon-sc0000313-1510915933:175967..176894TCONS_00018956-exon-sc0000313-1510915933:175967..176894Clytia hemisphaericaexon
TCONS_00018956-exon-sc0000313-1575043694:175967..176894TCONS_00018956-exon-sc0000313-1575043694:175967..176894Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018956-proteinTCONS_00018956-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:175967..176894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197373	0.240587	0.838033	0.765226	5.58953	4.41692	23.5357	23.2216	16.2164	13.7001	7.09876	12.4548	15.6207	18.7442	9.94663	11.0952	1.03717	2.42986	15.3162	15.0394	1.71748	0.977348	1.30125	2.57179	3.39057	4.82269	1.75914	2.59948	0.273835	0.111598
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002401Cyt_P450_E_grp-I
IPR001128Cyt_P450
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00018956 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 3.232e-62
Identity = 111/245 (45.31%), Postives = 158/245 (64.49%), Query Frame = 1 
Query:    1 NNNIKERSQDPTSEPRKAK--AFMDMLLDLY--EKGEIDIEGIREEVDTFMFEGHDTTASGLSWILYMLGLYPDIQQKLHEEIDQVADKAG--DLVERIRGIKYLEHVIKEGLRLHPPVLIYARKLEKDSKICGVSMPKGTQLVIDAHALHTNPEYWDEPMKFNPDRFAEEKFAKRNPYCYVPFSAGPRNCIGQKFAMLNEKILLYHVMLKYKVVSVQKEEDVAECFEIIHKSENGLVVKLEHRN 717
            N N   R     S P K K  AF+D+LL +   E   +  E IREEVDTFMFEGHDTTA+ ++W LY+LG  P++Q+K+  E+D V  K+     VE ++ ++YLE VIKE LRL P V ++AR + +D ++ G  + KGT+ VI  +ALH +P Y+  P +F P+RF  E    R+PY YVPFSAGPRNCIGQKFA++ EK +L  ++  + + S QK E++    ++I +  NG+ +KL+ RN
Sbjct:  277 NANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRRN 521
The following BLAST results are available for this feature:
BLAST of TCONS_00018956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP4V23.232e-6245.31Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
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