TCONS_00018943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018943
Unique NameTCONS_00018943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018943 ID=TCONS_00018943|Name=TCONS_00018943|organism=Clytia hemisphaerica|type=transcript|length=2505bp
TTACAAAATTGTTCTTTAACTTACTGTAATAAAACTGtaataattttgtc
attttatagTGAACAGAGAAAAATGTcattatattgtgctgataatGCGT
GTTATATACCTATCGAAGCTTCagtttaaaagtttgaaaaaagaaattac
atGTTTACTCAGCTTTATTTTTGCTATATTGGCAATCATCCAGATCACAC
ACCACGAATCAAGAGTTAATTATCATTGCTTGTTGTTTGGGAAGATATCA
GAACGTGACCGACTTTTCGAGGAAGGATCAATTCCATTATGTTTGCTTTA
TGTGTTGACTCAATATTTCATGGCCTTCTCATCTTTGTTCCTTTGGTACC
ACACTAGAAAATTCCCAGAATTCTCATGgGCAGGCACGATACAATCAAGA
ATATGCTGGGCTGTCTGGTTTTTATACCTTTTATCCATGTACACCACAGT
GCTTCTAGGGATACGATCAATTTGTAACAGTCTTACAACACCCATTTGTG
ATGATAGCATGATTCTTTACATCGATTTCAAAGTGTTCAAACCGAAATAT
TTTGACGCTTGGTACTTTCTGCGTTTTTGGAAAAGATCAATGATATTTTC
ATCCCTGTGTATGGTGTCAACCATGttattttgtttctttaattGGTCCA
GCAAAGATGACACGATAACGCCCTCTCCGCCACAAGAGAAGTATACCATC
GTGTCAGTATAAAGGAGGGGGATTTCTTATTGTTTCTACTTGACCAATAA
TGTGGGCTGTAATAACTTCTCTGAATGCTATCAAGCTAACCTACCATATT
ATGCTCTTTGGCAGGTTTGAAACGTGtatgtttcattgttttaatcGTCC
TACCTGTTGTAATTGGAGCAAGACAGCCCTATATTTAAAGAGCAACTATT
TAAGaagtatttgaaagaaaatatttaaaaaatgacgCTTGGatgataac
ttttaaaatctttgataATATGAGAATAGACGTTTCCTCTTGTTTGTACA
TACTATTTTAATCTAAATACGTTTGTAGAGTAGATTTGACGAACTAACTT
CATGCCCTTTCTTTAATGAGATAAGATTTGGTGGTTTTTATGGGGActga
aaagttttgtttttaaataagagagatatcgtttgcttactcatcaattt
tattttacaagctttttgatattgaataaacacgaatgtggagcaagatt
ggtcagaaagagggaaagaaaaacattttattgtttatatcagcataata
aaaaaatagcaagacactgtcctgatatgaaatatgtgtctgatatgaaa
cggaaacataaaaaataaaacctttaatatgGCGGATGCGCTACTCGAAA
CTTTTTCTGTAGGAACTTCCATAGACCATAGAGGCTTTCTGATACTGTCA
TGGAGTATAGaacacattttttaaataatatctTGGCTACGTTGGCCATC
CGCTGTTATGATCTAAGCTAAGTTAAAGTAGTTTTAATTGgaatagtttt
tatatttaatgTAGTTAAACTGGGTTGCTTTAGCtgtatgatattttttt
tagaaatgagATGATTTAAAGATTAAGTAtaaattttgacataatttatt
TAGGTTAGGTCGGATTCTTTatgtaattttacttttttttctgttATTCA
TGTTTTCTCGTTATTTCCGACTATTACATTCACacatttaatttttaatt
ttttatagaaTAATTTCATTTACTTCATTCTGAATTCCTTAACGTACTAT
AATTTTTGCGGTTTGGAATTTTTCAGACGAATTTCTGTAATTGTAAATTT
GATTCACTTTCAGCTTTAACTTGCACCCTTTTACCCCAAAATCGAGAAAA
CCGTAAGAAATGATTCCATCGGAAATTGTTTCTCCTAAGATTTTTTGCAT
TTGATTATTGTGTGTTTtgtttaatatttctttttttgcgaAAGCCAAAG
TGCAATTCTTGATGCTATACCTAcggaaacattttgaaaaacagaCTATA
TCAACAGTTTTATAACttacatttcaaaattggtGGCTAAATCTGTCTTT
TTAAGTTTGTTTTCTCACAAGATATTATTGCTGTCAAGATTAATgtaatg
taataaaaatctaaGATAATTTGCCTTGCCTTTAGAAATGAAAAACGATC
CCAAAACCAGCGCCCTTTGTAGATAGATAGCATTTTCTTGAATTCTGAGT
TTGTTGGAAATTACAATTGTTTCTCATCAATCTCTAATTCCGTAGTCAAT
CATCtgataaaaattttcctttcttgGGGAACTTTCCGATCAATCCTGGT
TAACCGGATAGGAATAGCAGAAAGGTCCACTTCTAGTAGTAGTAGGATGT
TATCCcgggaatcagaaaatattgcGGTTGTTCTATAACCGTATAATata
gtttcgtttttttttataacaattgTTTCGTTTTTTATAGTGAACATAAT
GTTTTTACAACTATTTGGTTTGGAAAAGATATCTGACTTTTTTAGAAATT
CACGA
Run BLAST on NCBI

transcript from alignment at sc0000313:282854..286586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018943 ID=TCONS_00018943|Name=TCONS_00018943|organism=Clytia hemisphaerica|type=transcript|length=3733bp|location=Sequence derived from alignment at sc0000313:282854..286586- (Clytia hemisphaerica)
TTACAAAATTGTTCTTTAACTTACTGTAATAAAACTGTAATAATTTTGTC
ATTTTATAGTGAACAGAGAAAAATGTCATTATATTGTGCTGATAATGCGT
GTTATATACCTATCGAAGCTTCAGTTTAAAAGTTTGAAAAAAGAAATTAC
ATGTTTACTCAGCTTTATTTTTGCTATATTGGCAATCATCCAGATCACAC
ACCACGAATCAAGAGTTAATTATCATTGCTTGTTGTTTGGGAAGATATCA
GAACGTGACCGACTTTTCGAGGAAGGATCAATTCCATTATGTTTGCTTTA
TGTGTTGACTCAATATTTCATGGCCTTCTCATCTTTGTTCCTTTGGTACC
ACACTAGAAAATTCCCAGAATTCTCATGGTAAGTATTTATCTCAAAGCTA
AATTTAAAAAAAATCAAAACTGGATCAAAAATCGAAAAAAGATTTCAGGA
TATTTCCTTCATTTTTTTTTCTTTGAAAATTTGTATGATTGAAGAATGGT
TTGGCCATGATAATCATGAAATGCGAGACAACTCTCTAATAAATTCTTGA
TGAAGAATCGTTTACTTTTTAAAATCAATTGTTCGGATATAATGCACACA
ACCAGTACAACTTCCAGGTCAGAGTGAAATTAATATCCAATTTTCTTTCT
TCAGGGCAGGCACGATACAATCAAGAATATGCTGGGCTGTCTGGTTTTTA
TACCTTTTATCCATGTACACCACAGTGCTTCTAGGGATACGATCAATTTG
TAACAGTCTTACAACACCCATGTATATATTGTCTTATATTAATAGCCAAG
TATTTTGTTGGTCACCTTCTGCGCCCGAAATGTCCCTCCCCTCATTTCAA
GGGTAGATCATACACCACTTTAAAAAATCTCTGATTTGAAAACGAATTTC
CAGAGAGCCAAGGTAGAAAATTTCCCCACCATTCAATTTTTTAAGAATAA
AAGTCAAGTCTGTTACTCCACCAATATACACCTACCATAGCGTCAGCCCG
CCCTTGAAGGGGGGGGGGGGGGCAGGGGTTACCTTAAAATATACCAATAT
AAAGAGGGGCTGGAAGTCTACCACTTTTTTGGGGGACCTAATGTACCTGG
GGGTTAGAATCTAATCACTAAGTTTAGGGGCTGAATGCTTCAGCCAAATA
GAATCAATTTTCCCTGGAACAATATTTGAAAGTATTGAAGTTCGAAATTC
CCAGGGGCAGACACTTTATCTTACATAAAGGTAGAGTTGTATATATGCCC
TACATACGGATGAACAGATGTTTTAAAAAACATCCATTATTCATATTCTT
TTTTTTACATTCTAGTTGTGATGATAGCATGATTCTTTACATCGATTTCA
AAGTGTTCAAACCGAAATATTTTGACGCTTGGTACTTTCTGCGTTTTTGG
AAAAGATCAATGGTGAGCTTTTTACTGCTTTACTTCGCTGTGAGAAACTG
TGTATATAATATACCCCTTACTGACTTACTTACAAGGGTTAAACTTTGTA
CACAGATCTCGAAACCGAAGCATTGCTTTTCTTAGAATTACTTTCATGAA
ACTGTTAGTTTTAAGTTTGAAAAATTTAAGCAAGTGCTGACCATTTCACA
ACCACGAAATTTCACCTAGTTTCACTTTTCAGTGCCTTGTTTGTTGCACA
TTCTGTTTTTTGAGATGAACATATACTCTCCTTTTTTGGAAAAACTTTTC
TTTCAAAATCTACCCTTTCTCTTATAACGCATTTCCCCTTATGCCTTAAT
AACTTTGGATCTCTTTTTGTATTACAAATTTAAATTCGTTTAACTATCAA
TTTCTTTCTTTTTTCATTAGATATTTTCATCCCTGTGTATGGTGTCAACC
ATGTTATTTTGTTTCTTTAATTGGTCCAGCAAAGATGACACGATAACGCC
CTCTCCGCCACAAGAGAAGTATACCATCGTGTCAGTATAAAGGAGGGGGA
TTTCTTATTGTTTCTACTTGACCAATAATGTGGGCTGTAATAACTTCTCT
GAATGCTATCAAGCTAACCTACCATATTATGCTCTTTGGCAGGTTTGAAA
CGTGTATGTTTCATTGTTTTAATCGTCCTACCTGTTGTAATTGGAGCAAG
ACAGCCCTATATTTAAAGAGCAACTATTTAAGAAGTATTTGAAAGAAAAT
ATTTAAAAAATGACGCTTGGATGATAACTTTTAAAATCTTTGATAATATG
AGAATAGACGTTTCCTCTTGTTTGTACATACTATTTTAATCTAAATACGT
TTGTAGAGTAGATTTGACGAACTAACTTCATGCCCTTTCTTTAATGAGAT
AAGATTTGGTGGTTTTTATGGGGACTGAAAAGTTTTGTTTTTAAATAAGA
GAGATATCGTTTGCTTACTCATCAATTTTATTTTACAAGCTTTTTGATAT
TGAATAAACACGAATGTGGAGCAAGATTGGTCAGAAAGAGGGAAAGAAAA
ACATTTTATTGTTTATATCAGCATAATAAAAAAATAGCAAGACACTGTCC
TGATATGAAATATGTGTCTGATATGAAACGGAAACATAAAAAATAAAACC
TTTAATATGGCGGATGCGCTACTCGAAACTTTTTCTGTAGGAACTTCCAT
AGACCATAGAGGCTTTCTGATACTGTCATGGAGTATAGAACACATTTTTT
AAATAATATCTTGGCTACGTTGGCCATCCGCTGTTATGATCTAAGCTAAG
TTAAAGTAGTTTTAATTGGAATAGTTTTTATATTTAATGTAGTTAAACTG
GGTTGCTTTAGCTGTATGATATTTTTTTTAGAAATGAGATGATTTAAAGA
TTAAGTATAAATTTTGACATAATTTATTTAGGTTAGGTCGGATTCTTTAT
GTAATTTTACTTTTTTTTCTGTTATTCATGTTTTCTCGTTATTTCCGACT
ATTACATTCACACATTTAATTTTTAATTTTTTATAGAATAATTTCATTTA
CTTCATTCTGAATTCCTTAACGTACTATAATTTTTGCGGTTTGGAATTTT
TCAGACGAATTTCTGTAATTGTAAATTTGATTCACTTTCAGCTTTAACTT
GCACCCTTTTACCCCAAAATCGAGAAAACCGTAAGAAATGATTCCATCGG
AAATTGTTTCTCCTAAGATTTTTTGCATTTGATTATTGTGTGTTTTGTTT
AATATTTCTTTTTTTGCGAAAGCCAAAGTGCAATTCTTGATGCTATACCT
ACGGAAACATTTTGAAAAACAGACTATATCAACAGTTTTATAACTTACAT
TTCAAAATTGGTGGCTAAATCTGTCTTTTTAAGTTTGTTTTCTCACAAGA
TATTATTGCTGTCAAGATTAATGTAATGTAATAAAAATCTAAGATAATTT
GCCTTGCCTTTAGAAATGAAAAACGATCCCAAAACCAGCGCCCTTTGTAG
ATAGATAGCATTTTCTTGAATTCTGAGTTTGTTGGAAATTACAATTGTTT
CTCATCAATCTCTAATTCCGTAGTCAATCATCTGATAAAAATTTTCCTTT
CTTGGGGAACTTTCCGATCAATCCTGGTTAACCGGATAGGAATAGCAGAA
AGGTCCACTTCTAGTAGTAGTAGGATGTTATCCCGGGAATCAGAAAATAT
TGCGGTTGTTCTATAACCGTATAATATAGTTTCGTTTTTTTTTATAACAA
TTGTTTCGTTTTTTATAGTGAACATAATGTTTTTACAACTATTTGGTTTG
GAAAAGATATCTGACTTTTTTAGAAATTCACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010617XLOC_010617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018943-exon-sc0000313-1575043694:286209..286586TCONS_00018943-exon-sc0000313-1575043694:286209..286586Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1575043694:285816..285932TCONS_00018943-exon-sc0000313-1575043694:285816..285932Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1575043694:285175..285271TCONS_00018943-exon-sc0000313-1575043694:285175..285271Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1575043694:282854..284766TCONS_00018943-exon-sc0000313-1575043694:282854..284766Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1510915933:286209..286586TCONS_00018943-exon-sc0000313-1510915933:286209..286586Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1510915933:285816..285932TCONS_00018943-exon-sc0000313-1510915933:285816..285932Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1510915933:285175..285271TCONS_00018943-exon-sc0000313-1510915933:285175..285271Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1510915933:282854..284766TCONS_00018943-exon-sc0000313-1510915933:282854..284766Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1491911889:286209..286586TCONS_00018943-exon-sc0000313-1491911889:286209..286586Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1491911889:285816..285932TCONS_00018943-exon-sc0000313-1491911889:285816..285932Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1491911889:285175..285271TCONS_00018943-exon-sc0000313-1491911889:285175..285271Clytia hemisphaericaexon
TCONS_00018943-exon-sc0000313-1491911889:282854..284766TCONS_00018943-exon-sc0000313-1491911889:282854..284766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:282854..286586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10206	2.05784	2.85966	3.40446	33.4365	24.6731	22.0087	22.2021	12.6416	13.3085	10.4368	8.80729	5.88051	5.1418	4.6975	5.03798	6.27727	6.83853	5.38131	7.23662	6.68411	6.34605	7.78985	9.05184	6.43762	8.94142	11.6627	9.14964	8.39988	7.94526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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