TCONS_00018942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018942
Unique NameTCONS_00018942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018942 ID=TCONS_00018942|Name=TCONS_00018942|organism=Clytia hemisphaerica|type=transcript|length=1992bp
attttgtcattttatagTGAACAGAGAAAAATGTcattatattgtgctga
taatGCGTGTTATATACCTATCGAAGCTTCagtttaaaagtttgaaaaaa
gaaattacatGTTTACTCAGCTTTATTTTTGCTATATTGGCAATCATCCA
GATCACACACCACGAATCAAGAGTTAATTATCATTGCTTGTTGTTTGGGA
AGATATCAGAACGTGACCGACTTTTCGAGGAAGGATCAATTCCATTATGT
TTGCTTTATGTGTTGACTCAATATTTCATGGCCTTCTCATCTTTGTTCCT
TTGGTACCACACTAGAAAATTCCCAGAATTCTCATGgGCAGGCACGATAC
AATCAAGAATATGCTGGGCTGTCTGGTTTTTATACCTTTTATCCATGTAC
ACCACAGTGCTTCTAGGGATACGATCAATTTGTAACAGTCTTACAACACC
CATTTGTGATGATAGCATGATTCTTTACATCGATTTCAAAGTGTTCAAAC
CGAAATATTTTGACGCTTGGTACTTTCTGCGTTTTTGGAAAAGATCAATG
ATATTTTCATCCCTGTGTATGGTGTCAACCATGttattttgtttctttaa
ttGGTCCAGCAAAGATGACACGATAACGCCCTCTCCGCCACAAGAGAAct
ttttgatattgaataaacacgaatgtggagcaagattggtcagaaagagg
gaaagaaaaacattttattgtttatatcagcataataaaaaaatagcaag
acactgtcctgatatgaaatatgtgtctgatatgaaacggaaacataaaa
aataaaacctttaatatgGCGGATGCGCTACTCGAAACTTTTTCTGTAGG
AACTTCCATAGACCATAGAGGCTTTCTGATACTGTCATGGAGTATAGaac
acattttttaaataatatctTGGCTACGTTGGCCATCCGCTGTTATGATC
TAAGCTAAGTTAAAGTAGTTTTAATTGgaatagtttttatatttaatgTA
GTTAAACTGGGTTGCTTTAGCtgtatgatattttttttagaaatgagATG
ATTTAAAGATTAAGTAtaaattttgacataatttattTAGGTTAGGTCGG
ATTCTTTatgtaattttacttttttttctgttATTCATGTTTTCTCGTTA
TTTCCGACTATTACATTCACacatttaatttttaattttttatagaaTAA
TTTCATTTACTTCATTCTGAATTCCTTAACGTACTATAATTTTTGCGGTT
TGGAATTTTTCAGACGAATTTCTGTAATTGTAAATTTGATTCACTTTCAG
CTTTAACTTGCACCCTTTTACCCCAAAATCGAGAAAACCGTAAGAAATGA
TTCCATCGGAAATTGTTTCTCCTAAGATTTTTTGCATTTGATTATTGTGT
GTTTtgtttaatatttctttttttgcgaAAGCCAAAGTGCAATTCTTGAT
GCTATACCTAcggaaacattttgaaaaacagaCTATATCAACAGTTTTAT
AACttacatttcaaaattggtGGCTAAATCTGTCTTTTTAAGTTTGTTTT
CTCACAAGATATTATTGCTGTCAAGATTAATgtaatgtaataaaaatcta
aGATAATTTGCCTTGCCTTTAGAAATGAAAAACGATCCCAAAACCAGCGC
CCTTTGTAGATAGATAGCATTTTCTTGAATTCTGAGTTTGTTGGAAATTA
CAATTGTTTCTCATCAATCTCTAATTCCGTAGTCAATCATCtgataaaaa
ttttcctttcttgGGGAACTTTCCGATCAATCCTGGTTAACCGGATAGGA
ATAGCAGAAAGGTCCACTTCTAGTAGTAGTAGGATGTTATCCcgggaatc
agaaaatattgcGGTTGTTCTATAACCGTATAATatagtttcgttttttt
ttataacaattgTTTCGTTTTTTATAGTGAACATAATGTTTTTACAACTA
TTTGGTTTGGAAAAGATATCTGACTTTTTTAGAAATTCACGA
Run BLAST on NCBI

transcript from alignment at sc0000313:282854..286544-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018942 ID=TCONS_00018942|Name=TCONS_00018942|organism=Clytia hemisphaerica|type=transcript|length=3691bp|location=Sequence derived from alignment at sc0000313:282854..286544- (Clytia hemisphaerica)
ATTTTGTCATTTTATAGTGAACAGAGAAAAATGTCATTATATTGTGCTGA
TAATGCGTGTTATATACCTATCGAAGCTTCAGTTTAAAAGTTTGAAAAAA
GAAATTACATGTTTACTCAGCTTTATTTTTGCTATATTGGCAATCATCCA
GATCACACACCACGAATCAAGAGTTAATTATCATTGCTTGTTGTTTGGGA
AGATATCAGAACGTGACCGACTTTTCGAGGAAGGATCAATTCCATTATGT
TTGCTTTATGTGTTGACTCAATATTTCATGGCCTTCTCATCTTTGTTCCT
TTGGTACCACACTAGAAAATTCCCAGAATTCTCATGGTAAGTATTTATCT
CAAAGCTAAATTTAAAAAAAATCAAAACTGGATCAAAAATCGAAAAAAGA
TTTCAGGATATTTCCTTCATTTTTTTTTCTTTGAAAATTTGTATGATTGA
AGAATGGTTTGGCCATGATAATCATGAAATGCGAGACAACTCTCTAATAA
ATTCTTGATGAAGAATCGTTTACTTTTTAAAATCAATTGTTCGGATATAA
TGCACACAACCAGTACAACTTCCAGGTCAGAGTGAAATTAATATCCAATT
TTCTTTCTTCAGGGCAGGCACGATACAATCAAGAATATGCTGGGCTGTCT
GGTTTTTATACCTTTTATCCATGTACACCACAGTGCTTCTAGGGATACGA
TCAATTTGTAACAGTCTTACAACACCCATGTATATATTGTCTTATATTAA
TAGCCAAGTATTTTGTTGGTCACCTTCTGCGCCCGAAATGTCCCTCCCCT
CATTTCAAGGGTAGATCATACACCACTTTAAAAAATCTCTGATTTGAAAA
CGAATTTCCAGAGAGCCAAGGTAGAAAATTTCCCCACCATTCAATTTTTT
AAGAATAAAAGTCAAGTCTGTTACTCCACCAATATACACCTACCATAGCG
TCAGCCCGCCCTTGAAGGGGGGGGGGGGGGCAGGGGTTACCTTAAAATAT
ACCAATATAAAGAGGGGCTGGAAGTCTACCACTTTTTTGGGGGACCTAAT
GTACCTGGGGGTTAGAATCTAATCACTAAGTTTAGGGGCTGAATGCTTCA
GCCAAATAGAATCAATTTTCCCTGGAACAATATTTGAAAGTATTGAAGTT
CGAAATTCCCAGGGGCAGACACTTTATCTTACATAAAGGTAGAGTTGTAT
ATATGCCCTACATACGGATGAACAGATGTTTTAAAAAACATCCATTATTC
ATATTCTTTTTTTTACATTCTAGTTGTGATGATAGCATGATTCTTTACAT
CGATTTCAAAGTGTTCAAACCGAAATATTTTGACGCTTGGTACTTTCTGC
GTTTTTGGAAAAGATCAATGGTGAGCTTTTTACTGCTTTACTTCGCTGTG
AGAAACTGTGTATATAATATACCCCTTACTGACTTACTTACAAGGGTTAA
ACTTTGTACACAGATCTCGAAACCGAAGCATTGCTTTTCTTAGAATTACT
TTCATGAAACTGTTAGTTTTAAGTTTGAAAAATTTAAGCAAGTGCTGACC
ATTTCACAACCACGAAATTTCACCTAGTTTCACTTTTCAGTGCCTTGTTT
GTTGCACATTCTGTTTTTTGAGATGAACATATACTCTCCTTTTTTGGAAA
AACTTTTCTTTCAAAATCTACCCTTTCTCTTATAACGCATTTCCCCTTAT
GCCTTAATAACTTTGGATCTCTTTTTGTATTACAAATTTAAATTCGTTTA
ACTATCAATTTCTTTCTTTTTTCATTAGATATTTTCATCCCTGTGTATGG
TGTCAACCATGTTATTTTGTTTCTTTAATTGGTCCAGCAAAGATGACACG
ATAACGCCCTCTCCGCCACAAGAGAAGTATACCATCGTGTCAGTATAAAG
GAGGGGGATTTCTTATTGTTTCTACTTGACCAATAATGTGGGCTGTAATA
ACTTCTCTGAATGCTATCAAGCTAACCTACCATATTATGCTCTTTGGCAG
GTTTGAAACGTGTATGTTTCATTGTTTTAATCGTCCTACCTGTTGTAATT
GGAGCAAGACAGCCCTATATTTAAAGAGCAACTATTTAAGAAGTATTTGA
AAGAAAATATTTAAAAAATGACGCTTGGATGATAACTTTTAAAATCTTTG
ATAATATGAGAATAGACGTTTCCTCTTGTTTGTACATACTATTTTAATCT
AAATACGTTTGTAGAGTAGATTTGACGAACTAACTTCATGCCCTTTCTTT
AATGAGATAAGATTTGGTGGTTTTTATGGGGACTGAAAAGTTTTGTTTTT
AAATAAGAGAGATATCGTTTGCTTACTCATCAATTTTATTTTACAAGCTT
TTTGATATTGAATAAACACGAATGTGGAGCAAGATTGGTCAGAAAGAGGG
AAAGAAAAACATTTTATTGTTTATATCAGCATAATAAAAAAATAGCAAGA
CACTGTCCTGATATGAAATATGTGTCTGATATGAAACGGAAACATAAAAA
ATAAAACCTTTAATATGGCGGATGCGCTACTCGAAACTTTTTCTGTAGGA
ACTTCCATAGACCATAGAGGCTTTCTGATACTGTCATGGAGTATAGAACA
CATTTTTTAAATAATATCTTGGCTACGTTGGCCATCCGCTGTTATGATCT
AAGCTAAGTTAAAGTAGTTTTAATTGGAATAGTTTTTATATTTAATGTAG
TTAAACTGGGTTGCTTTAGCTGTATGATATTTTTTTTAGAAATGAGATGA
TTTAAAGATTAAGTATAAATTTTGACATAATTTATTTAGGTTAGGTCGGA
TTCTTTATGTAATTTTACTTTTTTTTCTGTTATTCATGTTTTCTCGTTAT
TTCCGACTATTACATTCACACATTTAATTTTTAATTTTTTATAGAATAAT
TTCATTTACTTCATTCTGAATTCCTTAACGTACTATAATTTTTGCGGTTT
GGAATTTTTCAGACGAATTTCTGTAATTGTAAATTTGATTCACTTTCAGC
TTTAACTTGCACCCTTTTACCCCAAAATCGAGAAAACCGTAAGAAATGAT
TCCATCGGAAATTGTTTCTCCTAAGATTTTTTGCATTTGATTATTGTGTG
TTTTGTTTAATATTTCTTTTTTTGCGAAAGCCAAAGTGCAATTCTTGATG
CTATACCTACGGAAACATTTTGAAAAACAGACTATATCAACAGTTTTATA
ACTTACATTTCAAAATTGGTGGCTAAATCTGTCTTTTTAAGTTTGTTTTC
TCACAAGATATTATTGCTGTCAAGATTAATGTAATGTAATAAAAATCTAA
GATAATTTGCCTTGCCTTTAGAAATGAAAAACGATCCCAAAACCAGCGCC
CTTTGTAGATAGATAGCATTTTCTTGAATTCTGAGTTTGTTGGAAATTAC
AATTGTTTCTCATCAATCTCTAATTCCGTAGTCAATCATCTGATAAAAAT
TTTCCTTTCTTGGGGAACTTTCCGATCAATCCTGGTTAACCGGATAGGAA
TAGCAGAAAGGTCCACTTCTAGTAGTAGTAGGATGTTATCCCGGGAATCA
GAAAATATTGCGGTTGTTCTATAACCGTATAATATAGTTTCGTTTTTTTT
TATAACAATTGTTTCGTTTTTTATAGTGAACATAATGTTTTTACAACTAT
TTGGTTTGGAAAAGATATCTGACTTTTTTAGAAATTCACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010617XLOC_010617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018942-exon-sc0000313-1575043694:286209..286544TCONS_00018942-exon-sc0000313-1575043694:286209..286544Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1575043694:285816..285932TCONS_00018942-exon-sc0000313-1575043694:285816..285932Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1575043694:285175..285271TCONS_00018942-exon-sc0000313-1575043694:285175..285271Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1575043694:284669..284766TCONS_00018942-exon-sc0000313-1575043694:284669..284766Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1575043694:282854..284197TCONS_00018942-exon-sc0000313-1575043694:282854..284197Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1510915933:286209..286544TCONS_00018942-exon-sc0000313-1510915933:286209..286544Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1510915933:285816..285932TCONS_00018942-exon-sc0000313-1510915933:285816..285932Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1510915933:285175..285271TCONS_00018942-exon-sc0000313-1510915933:285175..285271Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1510915933:284669..284766TCONS_00018942-exon-sc0000313-1510915933:284669..284766Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1510915933:282854..284197TCONS_00018942-exon-sc0000313-1510915933:282854..284197Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1491911889:286209..286544TCONS_00018942-exon-sc0000313-1491911889:286209..286544Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1491911889:285816..285932TCONS_00018942-exon-sc0000313-1491911889:285816..285932Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1491911889:285175..285271TCONS_00018942-exon-sc0000313-1491911889:285175..285271Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1491911889:284669..284766TCONS_00018942-exon-sc0000313-1491911889:284669..284766Clytia hemisphaericaexon
TCONS_00018942-exon-sc0000313-1491911889:282854..284197TCONS_00018942-exon-sc0000313-1491911889:282854..284197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:282854..286544 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.162825	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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