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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018941 ID=TCONS_00018941|Name=TCONS_00018941|organism=Clytia hemisphaerica|type=transcript|length=2996bp
ttatagTGAACAGAGAAAAATGTcattatattgtgctgataatGCGTGTT
ATATACCTATCGAAGCTTCagtttaaaagtttgaaaaaagaaattacatG
TTTACTCAGCTTTATTTTTGCTATATTGGCAATCATCCAGATCACACACC
ACGAATCAAGAGTTAATTATCATTGCTTGTTGTTTGGGAAGATATCAGAA
CGTGACCGACTTTTCGAGGAAGGATCAATTCCATTATGTTTGCTTTATGT
GTTGACTCAATATTTCATGGCCTTCTCATCTTTGTTCCTTTGGTACCACA
CTAGAAAATTCCCAGAATTCTCATGgGCAGGCACGATACAATCAAGAATA
TGCTGGGCTGTCTGGTTTTTATACCTTTTATCCATGTACACCACAGTGCT
TCTAGGGATACGATCAATTTGTAACAGTCTTACAACACCCATGTATATAT
TGTCTTATATTAATAGCCAAGTATTTTGTTGGTCACCTTCTGCGCCCGAA
ATGTCCCTCCCCTCATTTCAAGGGTAGATCATACACCACTTTAAAAAATC
TCTGATTTGAAAACGAATTTCCAGAGAGCCAAGGTAGAAAATTTCCCCAC
CattcaattttttaagaataaaaGTCAAGTCTGTTACTCCACCAATATAC
ACCTACCATAGCGTCAGCCCGCCcttgaaggggggggggggggcaggggT
TACCTTAAAATATACCAATATAAAGAGGGGCTGGAAGTCTACCACTTTTT
TGGGGGACCTAATGTACCTGGGGGTTAGAATCTAATCACTAAGTTTAGGG
GCTGAATGCTTCAGCCAAATAGAATCAATTTTCCCTGGAACAATATTTGA
AAGTATTGAAGTTCGAAATTCCCAGGGGCAGACACTTTATCTTACATAAA
GGTAGAGTTGTATATATGCCCTACATACGGATGAACAGATGTTTTAAAAA
ACATCCATTATtcatattcttttttttacattcTAGTTGTGATGATAGCA
TGATTCTTTACATCGATTTCAAAGTGTTCAAACCGAAATATTTTGACGCT
TGGTACTTTCTGCGTTTTTGGAAAAGATCAATGATATTTTCATCCCTGTG
TATGGTGTCAACCATGttattttgtttctttaattGGTCCAGCAAAGATG
ACACGATAACGCCCTCTCCGCCACAAGAGAAGTATACCATCGTGTCAGTA
TAAAGGAGGGGGATTTCTTATTGTTTCTACTTGACCAATAATGTGGGCTG
TAATAACTTCTCTGAATGCTATCAAGCTAACCTACCATATTATGCTCTTT
GGCAGGTTTGAAACGTGtatgtttcattgttttaatcGTCCTACCTGTTG
TAATTGGAGCAAGACAGCCCTATATTTAAAGAGCAACTATTTAAGaagta
tttgaaagaaaatatttaaaaaatgacgCTTGGatgataacttttaaaat
ctttgataATATGAGAATAGACGTTTCCTCTTGTTTGTACATACTATTTT
AATCTAAATACGTTTGTAGAGTAGATTTGACGAACTAACTTCATGCCCTT
TCTTTAATGAGATAAGATTTGGTGGTTTTTATGGGGActgaaaagttttg
tttttaaataagagagatatcgtttgcttactcatcaattttattttaca
agctttttgatattgaataaacacgaatgtggagcaagattggtcagaaa
gagggaaagaaaaacattttattgtttatatcagcataataaaaaaatag
caagacactgtcctgatatgaaatatgtgtctgatatgaaacggaaacat
aaaaaataaaacctttaatatgGCGGATGCGCTACTCGAAACTTTTTCTG
TAGGAACTTCCATAGACCATAGAGGCTTTCTGATACTGTCATGGAGTATA
GaacacattttttaaataatatctTGGCTACGTTGGCCATCCGCTGTTAT
GATCTAAGCTAAGTTAAAGTAGTTTTAATTGgaatagtttttatatttaa
tgTAGTTAAACTGGGTTGCTTTAGCtgtatgatattttttttagaaatga
gATGATTTAAAGATTAAGTAtaaattttgacataatttattTAGGTTAGG
TCGGATTCTTTatgtaattttacttttttttctgttATTCATGTTTTCTC
GTTATTTCCGACTATTACATTCACacatttaatttttaattttttataga
aTAATTTCATTTACTTCATTCTGAATTCCTTAACGTACTATAATTTTTGC
GGTTTGGAATTTTTCAGACGAATTTCTGTAATTGTAAATTTGATTCACTT
TCAGCTTTAACTTGCACCCTTTTACCCCAAAATCGAGAAAACCGTAAGAA
ATGATTCCATCGGAAATTGTTTCTCCTAAGATTTTTTGCATTTGATTATT
GTGTGTTTtgtttaatatttctttttttgcgaAAGCCAAAGTGCAATTCT
TGATGCTATACCTAcggaaacattttgaaaaacagaCTATATCAACAGTT
TTATAACttacatttcaaaattggtGGCTAAATCTGTCTTTTTAAGTTTG
TTTTCTCACAAGATATTATTGCTGTCAAGATTAATgtaatgtaataaaaa
tctaaGATAATTTGCCTTGCCTTTAGAAATGAAAAACGATCCCAAAACCA
GCGCCCTTTGTAGATAGATAGCATTTTCTTGAATTCTGAGTTTGTTGGAA
ATTACAATTGTTTCTCATCAATCTCTAATTCCGTAGTCAATCATCtgata
aaaattttcctttcttgGGGAACTTTCCGATCAATCCTGGTTAACCGGAT
AGGAATAGCAGAAAGGTCCACTTCTAGTAGTAGTAGGATGTTATCCcggg
aatcagaaaatattgcGGTTGTTCTATAACCGTATAATatagtttcgttt
ttttttataacaattgTTTCGTTTTTTATAGTGAACATAATGTTTTTACA
ACTATTTGGTTTGGAAAAGATATCTGACTTTTTTAGAAATTCACGA Run BLAST on NCBI transcript from alignment at sc0000313:282854..286533- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018941 ID=TCONS_00018941|Name=TCONS_00018941|organism=Clytia hemisphaerica|type=transcript|length=3680bp|location=Sequence derived from alignment at sc0000313:282854..286533- (Clytia hemisphaerica)
TTATAGTGAACAGAGAAAAATGTCATTATATTGTGCTGATAATGCGTGTT
ATATACCTATCGAAGCTTCAGTTTAAAAGTTTGAAAAAAGAAATTACATG
TTTACTCAGCTTTATTTTTGCTATATTGGCAATCATCCAGATCACACACC
ACGAATCAAGAGTTAATTATCATTGCTTGTTGTTTGGGAAGATATCAGAA
CGTGACCGACTTTTCGAGGAAGGATCAATTCCATTATGTTTGCTTTATGT
GTTGACTCAATATTTCATGGCCTTCTCATCTTTGTTCCTTTGGTACCACA
CTAGAAAATTCCCAGAATTCTCATGGTAAGTATTTATCTCAAAGCTAAAT
TTAAAAAAAATCAAAACTGGATCAAAAATCGAAAAAAGATTTCAGGATAT
TTCCTTCATTTTTTTTTCTTTGAAAATTTGTATGATTGAAGAATGGTTTG
GCCATGATAATCATGAAATGCGAGACAACTCTCTAATAAATTCTTGATGA
AGAATCGTTTACTTTTTAAAATCAATTGTTCGGATATAATGCACACAACC
AGTACAACTTCCAGGTCAGAGTGAAATTAATATCCAATTTTCTTTCTTCA
GGGCAGGCACGATACAATCAAGAATATGCTGGGCTGTCTGGTTTTTATAC
CTTTTATCCATGTACACCACAGTGCTTCTAGGGATACGATCAATTTGTAA
CAGTCTTACAACACCCATGTATATATTGTCTTATATTAATAGCCAAGTAT
TTTGTTGGTCACCTTCTGCGCCCGAAATGTCCCTCCCCTCATTTCAAGGG
TAGATCATACACCACTTTAAAAAATCTCTGATTTGAAAACGAATTTCCAG
AGAGCCAAGGTAGAAAATTTCCCCACCATTCAATTTTTTAAGAATAAAAG
TCAAGTCTGTTACTCCACCAATATACACCTACCATAGCGTCAGCCCGCCC
TTGAAGGGGGGGGGGGGGGCAGGGGTTACCTTAAAATATACCAATATAAA
GAGGGGCTGGAAGTCTACCACTTTTTTGGGGGACCTAATGTACCTGGGGG
TTAGAATCTAATCACTAAGTTTAGGGGCTGAATGCTTCAGCCAAATAGAA
TCAATTTTCCCTGGAACAATATTTGAAAGTATTGAAGTTCGAAATTCCCA
GGGGCAGACACTTTATCTTACATAAAGGTAGAGTTGTATATATGCCCTAC
ATACGGATGAACAGATGTTTTAAAAAACATCCATTATTCATATTCTTTTT
TTTACATTCTAGTTGTGATGATAGCATGATTCTTTACATCGATTTCAAAG
TGTTCAAACCGAAATATTTTGACGCTTGGTACTTTCTGCGTTTTTGGAAA
AGATCAATGGTGAGCTTTTTACTGCTTTACTTCGCTGTGAGAAACTGTGT
ATATAATATACCCCTTACTGACTTACTTACAAGGGTTAAACTTTGTACAC
AGATCTCGAAACCGAAGCATTGCTTTTCTTAGAATTACTTTCATGAAACT
GTTAGTTTTAAGTTTGAAAAATTTAAGCAAGTGCTGACCATTTCACAACC
ACGAAATTTCACCTAGTTTCACTTTTCAGTGCCTTGTTTGTTGCACATTC
TGTTTTTTGAGATGAACATATACTCTCCTTTTTTGGAAAAACTTTTCTTT
CAAAATCTACCCTTTCTCTTATAACGCATTTCCCCTTATGCCTTAATAAC
TTTGGATCTCTTTTTGTATTACAAATTTAAATTCGTTTAACTATCAATTT
CTTTCTTTTTTCATTAGATATTTTCATCCCTGTGTATGGTGTCAACCATG
TTATTTTGTTTCTTTAATTGGTCCAGCAAAGATGACACGATAACGCCCTC
TCCGCCACAAGAGAAGTATACCATCGTGTCAGTATAAAGGAGGGGGATTT
CTTATTGTTTCTACTTGACCAATAATGTGGGCTGTAATAACTTCTCTGAA
TGCTATCAAGCTAACCTACCATATTATGCTCTTTGGCAGGTTTGAAACGT
GTATGTTTCATTGTTTTAATCGTCCTACCTGTTGTAATTGGAGCAAGACA
GCCCTATATTTAAAGAGCAACTATTTAAGAAGTATTTGAAAGAAAATATT
TAAAAAATGACGCTTGGATGATAACTTTTAAAATCTTTGATAATATGAGA
ATAGACGTTTCCTCTTGTTTGTACATACTATTTTAATCTAAATACGTTTG
TAGAGTAGATTTGACGAACTAACTTCATGCCCTTTCTTTAATGAGATAAG
ATTTGGTGGTTTTTATGGGGACTGAAAAGTTTTGTTTTTAAATAAGAGAG
ATATCGTTTGCTTACTCATCAATTTTATTTTACAAGCTTTTTGATATTGA
ATAAACACGAATGTGGAGCAAGATTGGTCAGAAAGAGGGAAAGAAAAACA
TTTTATTGTTTATATCAGCATAATAAAAAAATAGCAAGACACTGTCCTGA
TATGAAATATGTGTCTGATATGAAACGGAAACATAAAAAATAAAACCTTT
AATATGGCGGATGCGCTACTCGAAACTTTTTCTGTAGGAACTTCCATAGA
CCATAGAGGCTTTCTGATACTGTCATGGAGTATAGAACACATTTTTTAAA
TAATATCTTGGCTACGTTGGCCATCCGCTGTTATGATCTAAGCTAAGTTA
AAGTAGTTTTAATTGGAATAGTTTTTATATTTAATGTAGTTAAACTGGGT
TGCTTTAGCTGTATGATATTTTTTTTAGAAATGAGATGATTTAAAGATTA
AGTATAAATTTTGACATAATTTATTTAGGTTAGGTCGGATTCTTTATGTA
ATTTTACTTTTTTTTCTGTTATTCATGTTTTCTCGTTATTTCCGACTATT
ACATTCACACATTTAATTTTTAATTTTTTATAGAATAATTTCATTTACTT
CATTCTGAATTCCTTAACGTACTATAATTTTTGCGGTTTGGAATTTTTCA
GACGAATTTCTGTAATTGTAAATTTGATTCACTTTCAGCTTTAACTTGCA
CCCTTTTACCCCAAAATCGAGAAAACCGTAAGAAATGATTCCATCGGAAA
TTGTTTCTCCTAAGATTTTTTGCATTTGATTATTGTGTGTTTTGTTTAAT
ATTTCTTTTTTTGCGAAAGCCAAAGTGCAATTCTTGATGCTATACCTACG
GAAACATTTTGAAAAACAGACTATATCAACAGTTTTATAACTTACATTTC
AAAATTGGTGGCTAAATCTGTCTTTTTAAGTTTGTTTTCTCACAAGATAT
TATTGCTGTCAAGATTAATGTAATGTAATAAAAATCTAAGATAATTTGCC
TTGCCTTTAGAAATGAAAAACGATCCCAAAACCAGCGCCCTTTGTAGATA
GATAGCATTTTCTTGAATTCTGAGTTTGTTGGAAATTACAATTGTTTCTC
ATCAATCTCTAATTCCGTAGTCAATCATCTGATAAAAATTTTCCTTTCTT
GGGGAACTTTCCGATCAATCCTGGTTAACCGGATAGGAATAGCAGAAAGG
TCCACTTCTAGTAGTAGTAGGATGTTATCCCGGGAATCAGAAAATATTGC
GGTTGTTCTATAACCGTATAATATAGTTTCGTTTTTTTTTATAACAATTG
TTTCGTTTTTTATAGTGAACATAATGTTTTTACAACTATTTGGTTTGGAA
AAGATATCTGACTTTTTTAGAAATTCACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018941-exon-sc0000313-1575043694:286209..286533 | TCONS_00018941-exon-sc0000313-1575043694:286209..286533 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1575043694:285175..285932 | TCONS_00018941-exon-sc0000313-1575043694:285175..285932 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1575043694:282854..284766 | TCONS_00018941-exon-sc0000313-1575043694:282854..284766 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1510915933:286209..286533 | TCONS_00018941-exon-sc0000313-1510915933:286209..286533 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1510915933:285175..285932 | TCONS_00018941-exon-sc0000313-1510915933:285175..285932 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1510915933:282854..284766 | TCONS_00018941-exon-sc0000313-1510915933:282854..284766 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1491911889:286209..286533 | TCONS_00018941-exon-sc0000313-1491911889:286209..286533 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1491911889:285175..285932 | TCONS_00018941-exon-sc0000313-1491911889:285175..285932 | Clytia hemisphaerica | exon |
| TCONS_00018941-exon-sc0000313-1491911889:282854..284766 | TCONS_00018941-exon-sc0000313-1491911889:282854..284766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000313 | supercontig | sc0000313:282854..286533 - |
Blast
The following BLAST results are available for this feature:
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