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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018936 ID=TCONS_00018936|Name=TCONS_00018936|organism=Clytia hemisphaerica|type=transcript|length=1783bpRun BLAST on NCBI protein sequence of TCONS_00018936-protein >TCONS_00018936-protein ID=TCONS_00018936-protein|Name=TCONS_00018936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp MAETKVGYSSKKKNKGNVELYKDRESQLEAIEASFEAAKKPITRHYSNPRRun BLAST on NCBI transcript from alignment at sc0000313:125769..145220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018936 ID=TCONS_00018936|Name=TCONS_00018936|organism=Clytia hemisphaerica|type=transcript|length=19452bp|location=Sequence derived from alignment at sc0000313:125769..145220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000313:125769..145220- >TCONS_00018936 ID=TCONS_00018936|Name=TCONS_00018936|organism=Clytia hemisphaerica|type=CDS|length=8580bp|location=Sequence derived from alignment at sc0000313:125769..145220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018936 vs. Swiss-Prot (Human)
Match: PAF1 (RNA polymerase II-associated factor 1 homolog OS=Homo sapiens GN=PAF1 PE=1 SV=2) HSP 1 Score: 409.453 bits (1051), Expect = 2.151e-135 Identity = 192/306 (62.75%), Postives = 238/306 (77.78%), Query Frame = 1
Query: 52 KEGFVCNVKYTNTLPDIPFDAKFIAYPFEANRFIQYKPTSLEKNYKHELLTEPDLGVTIDLINPETYDIDPNVELDPADEKLLEEDLAPQADKKRQRQHAKTVSWLRKTEYISTEYNRFQQSSDMAETKVGYSSKKKNKGNVELYKDRESQLEAIEASFEAAKKPITRHYSNPRLKPVEILPFFPDFQFWHMPCAHVIFDTEPTPRGKSEAATVDEMSLGMIRGMEDESGDQFVAYFLPNKDTLEKRKNESAGGTEPTDSDEYLYKLAREYNWNVKNKAIKGFEENYFFVFRENEGVFYNELQTRV 969
+ G VC VKY N+LPDIPFD KFI YPF+ NRF+QYK TSLEK +KH+LLTEPDLGVTIDLINP+TY IDPNV LDPADEKLLEE++ KR +QHAK V W+RKTEYISTE+NR+ S++ E K+G S K++ E+YKDR+SQ+ AIE +FE A+K I++HYS PR+ PVE++P FPDF+ W PCA VIFD++P P+ S AA ++ MS MIRGM DE G+QFVAYFLP ++TL+KRK + + D Y YK+AREYNWNVKNKA KG+EENYFF+FRE +GV+YNEL+TRV
Sbjct: 26 RSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFT-EEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRV 330 The following BLAST results are available for this feature:
BLAST of TCONS_00018936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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