TCONS_00018936-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018936-protein
Unique NameTCONS_00018936-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018936-protein ID=TCONS_00018936-protein|Name=TCONS_00018936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MAETKVGYSSKKKNKGNVELYKDRESQLEAIEASFEAAKKPITRHYSNPR
LKPVEILPFFPDFQFWHMPCAHVIFDTEPTPRGKSEAATVDEMSLGMIRG
MEDESGDQFVAYFLPNKDTLEKRKNESAGGTEPTDSDEYLYKLAREYNWN
VKNKAIKGFEENYFFVFRENEGVFYNELQTRVRLNKRRGRGGAGGVSSSV
SKLLVKNREPTENELRLQNARLVQLENVAQEEDNDEEGDDSDDNENNADN
ETTINENKNDSQDNDDDKDKSGSDSGSDLFGSDSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010614XLOC_010614Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018936TCONS_00018936Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007133RNA_pol_II-assoc_Paf1
Vocabulary: Biological Process
TermDefinition
GO:0016570histone modification
GO:0006368transcription elongation from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016593Cdc73/Paf1 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016570 histone modification
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
cellular_component GO:0016593 Cdc73/Paf1 complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 215..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..285
IPR007133RNA polymerase II associated factor Paf1PFAMPF03985Paf1coord: 2..272
e-value: 1.0E-75
score: 255.3

Blast
[Close]
BLAST of TCONS_00018936-protein vs. Swiss-Prot (Human)
Match: PAF1 (RNA polymerase II-associated factor 1 homolog OS=Homo sapiens GN=PAF1 PE=1 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 4.962e-83
Identity = 141/287 (49.13%), Postives = 189/287 (65.85%), Query Frame = 0 
Query:    3 ETKVGYSSKKKNKGNVELYKDRESQLEAIEASFEAAKKPITRHYSNPRLKPVEILPFFPDFQFWHMPCAHVIFDTEPTPRGKSEAATVDEMSLGMIRGMEDESGDQFVAYFLPNKDTLEKRKNESAGGTEPTDSDEYLYKLAREYNWNVKNKAIKGFEENYFFVFRENEGVFYNELQTRVRLNKRRGRGGAGGVSSSVSKLLVKNREPTENELRLQNARLVQL----------------ENVAQEEDNDEEGDDSDDNENNADNETTINENKNDSQDNDDDKDKSGS 273
            E K+G S K++     E+YKDR+SQ+ AIE +FE A+K I++HYS PR+ PVE++P FPDF+ W  PCA VIFD++P P+  S AA ++ MS  MIRGM DE G+QFVAYFLP ++TL+KRK +     +    D Y YK+AREYNWNVKNKA KG+EENYFF+FRE +GV+YNEL+TRVRL+KRR +  AG  S + + L+VK+R+  E EL  Q AR  QL                E  A   D ++E   S + E + D E + +E++ +  D D+  DKSGS
Sbjct:  152 EVKIGVSVKQQFTEE-EIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAK--AGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSED-EHSGSESEREEGDRDEASDKSGS 434
The following BLAST results are available for this feature:
BLAST of TCONS_00018936-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAF14.962e-8349.13RNA polymerase II-associated factor 1 homolog OS=H... [more]
back to top