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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018909 ID=TCONS_00018909|Name=TCONS_00018909|organism=Clytia hemisphaerica|type=transcript|length=965bp
CCATGCGATTTTATTTCTCTCGCAacttcatccgccatttttgatTCTTC
TCGGTAAAATTTCACGGTAGCGAAGATTTTCCATGTAGGCTATCAAAGTA
AAACTTTGTCCAGCCAGTTTTATCAATCATTAGCAATATTTGATCATTTG
CCAACCCGGTACATCAATTCCGCGGTAAAAATCGTAGACAGAACGTTTCA
TTTGCCTTTAGATTTTGATAAAAGCTGTTGTATTCTAGAACCGAAGAGAC
TTGGCTATCAAAAAGAATCAATCTAATCATGTCTACgttAATGGGGAAAC
CAAAAAGTGAACTGACATTTGAAGAATTGAAACAGCGAGAAGAGGAGGAG
TTCAAGACTGGACCCCTATCTGTTTTGATGTCATCTGTGAAGAATAACAC
TCAAGTACTCATAAACTGCAGAAACAACAGAAAGTTATTGGGTCGTGTGA
AAGCTTTTGATAGACATTGTAACATGGTATTGGAAAATGTTAAAGAAATG
TGGTATGAAATCCCCAAAACaggaaaaggaaagaaagcaaAACCTATCAA
CAAGGACAGATATATTGCTAAAATGTTTCTACGTGGAGATTCAGTGATTT
TGGTTTTGAAAAACCCTCTTGCATTGAAATAGATATGGGACCCTTTTGCA
GGTGTAATGTAAATACCCTTTAAATAAGTTATAACAACTATCTTTGAAAA
GCAAGGCACCTGGATTGTAATTGCAATGCCATTGGATGAGTTCATACGAA
TTGGGAAATCTGTAGAACATCCTTAAATGTTGATATCGTTTTGAAAGAAA
GACATCTGACAACaacattttgaaacattttttaatgtGATAATGGATTT
CCGAGATCACCAgataattttcacatttttataaataaagacttttttat
cCTTGTCTCTCAAAAGTAAAACACAGAATGACCTGACCTACAATCAAATc
attataattattata Run BLAST on NCBI protein sequence of TCONS_00018909-protein >TCONS_00018909-protein ID=TCONS_00018909-protein|Name=TCONS_00018909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MSTLMGKPKSELTFEELKQREEEEFKTGPLSVLMSSVKNNTQVLINCRNN
RKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKGKKAKPINKDRYIAKMF
LRGDSVILVLKNPLALK Run BLAST on NCBI transcript from alignment at sc0000313:62316..70284+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018909 ID=TCONS_00018909|Name=TCONS_00018909|organism=Clytia hemisphaerica|type=transcript|length=7969bp|location=Sequence derived from alignment at sc0000313:62316..70284+ (Clytia hemisphaerica)
CCATGCGATTTTATTTCTCTCGCAacttcatccgccatttttgatTCTTC
TCGGTAAAATTTCACGGTAGCGAAGATTTTCCATGTAGGCTATCAAAGTA
AAACTTTGTCCAGCCAGTTTTATCAATCATTAGCAATATTTGATCATTTG
CCAACCCGGTACATCAATTCCGCGGTAAAAATCGTAGACAGAACGTTTCA
TTTGCCTTTAGATTTTGATAAAAGCTGTTGTATTCTAGAACCGAAGAGAC
TTGGCTATCAAAAAGAATCAATCTAATCATGTCTACGTAAGTAATATATA
TTCTTcaattacttttcaaaatatcagtTTATGGACTTTATAGCTATATT
TCTAGAAGATtgcaattttgacgaattttaaaaTGGGTTTGCATATTCAA
actcaaaataaaaagaaagcaaTAATTACCTCAgatcacaaagttctaaa
attaaagTGCTTGTTGCTTCTAGATCAGTCTGATACAGAATTTTTGGTAC
AGTCTGTGTGACCTTGAAAAgcctaacctgagatcagattgtgtttgttt
tcTGCCAACCACGCTGAAATTCTATACTTACTTTTGGTCTTCAAGCATAC
AGCTCTGGCAAGAATCTTTTGATCCACACCACAATCTTCGTTAAATCCAC
AATTCCTGAAGGAAAAATGGATCAGCAGAGAgatttcatgtctaaaattg
AGTTTGAGTCAACCCTCCTGCACCCTTGTGTATTACCACAGATTTGGGGT
TCATCGGGAATTGTTTTGAGCTGCTTATCCAGTccagtatggatttcgtg
taactaacACCGAAGATCTTCTAcgtacaactgaaacgtttttagtgcat
tggcgtaagggtacttacaaagattgtttgattttcagttggcgtaagGT
AATaaataattccagctcggcgtgaatgattccaccctttttgaaaaatt
gaatgttggtacaaaagaaattttgcttggcgtgaggcttgctgtacGGA
AAAATATCTCCAGCACAAGATTttgtggaatccatactggtaTCCAGTGC
AGTTTTGAATTTATCAACTGGAACATTTTTCAAGTTTCTAATGCACTTTA
GCATTGCATTGAACTGCTTTGCACCATGTATTGCTAAGGTGCTGTCACGT
AATTTCGAATTATTTGGACCATTGTACTTTATAACACACATTCGTCCTAG
ACGAGTGGTCTTTAGCCTTGAAGCCATCATTGATATTTGGTACTATGCTT
TCTAGAATTTTCCAAGTATATATGATCCTATATCGTTCTCTCCTTCTCTG
AAGTGAGTTATATCTTGAGCTGCCAGTAATTTTGAGGTGTTCCTCttatt
tgctttaaaaaagatttctgtATATATCTCTTCAAGTCTTTGAATAAGGC
CGACAGCAACAGGGCTCCAAAGAACTGAGCAGTACTCCAGAATTGGGATA
ACAAGCGATTTATATAGAGTAAGCAAAGTATGAGATGAGTGGCAAGTGAA
AGTTTGCAATATCCAAGAAATGAGATTTCTGGCTTTTTCAATAGTTGTNC
AGCAAGTGAAAGTTCGCAATATCCAAGAAATGAGATTTCTGAAAAGTAAA
Tcagtttttagtaataagttggagatttgatatttcacagaaaagtgcta
tcaaggggtatttcgggtcccatatctcccgaaggacttttctgtttgcc
ttgaaattcaacaaacttcttaatctaaggttgaactaccactggtgtaa
aatgaacgttatagcataagtagaaaaaaaactcaatttttacaatcata
aatttaaccgctaaaaatcgcgaatttttcaaccaaaaatacattcaaat
atagcgcttttaattctctaaaactatcaaaagttacaggcattcttatt
tccactgccaattatatctggacagactttagtatttTCCCTTGGCTATT
TCTAAGTTATGGTTAagtctaaaattaaattttagcaGCTAAATATTACC
AGATGACTTGTTTGAACATGTCATATAAACATCAAGTTGATTGATGAACA
AGTTTTGgagaaaagataattttaaaacgccaacctggattttccgtcac
ggcgcaaCGCAAACTTTAAAGTGCCCTAAAAAATTACCTCGGTGTTTTAG
AGTGAATTCTTTTAGTGATTCTCAACAATCCTATAAGTctaatattttaa
acatttaaaaactgaaaaagttctgctttgttcaattttatttaaaaatt
atgattttccgtCACGGTGCAACGAAATTTTAGACCACCAAAAAACTCCA
TTGGACATCtgaaatgactttttttcttcagtgacttcaaaattatcaat
atttaaaaatatttggtaAGGTAAACTACTTTGTAGCCTTTATATGccta
ttttgtaaaaatattaacttTTGTGAACTTTCCAGGGATTTTAGCCCAGA
AATCGGTAATCTGGTCATAACTTTTCAATGGAGCATGTTCCTGCTCTGAT
TTTTTTCACATATTGTTCATGAAATGATATTCTTTATGtctatataaaat
tttttgacattctgaaaacttcattttttgccatttttcagattttttgg
gacaagctttttgcttattgctaACATCAACATTGGTCTCCTTGTCAAAT
TGATTTAGTATTAGATCATGTTGCTCAAGTTACTGACTTAAACACGATCT
CCCACTTCTAAAGCCATGTTGATTTGGGTTGAAAAGGTTATTATCATCCA
TGTGTTTAACTATGTGACCTCTGATAactttctcaaatatttttattaca
tGTGAGGTTAGTGCAACTGGTCTATAATTTGAAGCCATTGACTTATTTCC
GCCTCTGTAGATTGGGGGTGATGGTTGATTTCTTTAGTTTTGCAAGGCTT
GTTTTCCATAGATGGCACAGCGGGAAAGCCAATTCCTCTTTGCAATGCTT
CAGAAATATAGATGGGAAGCCATCTGGGCCAGCAGCTGAGGATGGAGAAA
GCTCATTGatggctttcattatattttcttCTGTAACCACTATCTCTGAC
ATTTTGGTTGCTCCCGGATCAAAGGTTTCAGCATCTGGTGACATAGGTCA
ACTGAATATTTTAGAGTATTGTTTCGAAAGGATGTCAgccatttctttat
tttttattgtaaGTTTTCCATTGTTGTCTATCAGTGGTCCAATTTACTTT
TGCTTTCTTGCGGGCGTATGCAAAGAAATACTTGGAATTCTTTTTAATAG
ATTCAATTGCTTTATTTTCAGCAAATTACTTTGagtctttgaaagatttt
tgcaGCTTTTTCTCAATTTGTAGCAACTCCTCTTTGATTTTTGCCTTTCT
GTTTTGCGAGTTACTGTGTAAAagcttttttgtaatttttcttcgtCTTT
TGGTTAAGGTTCGACGATACCTTTGAACTTTGGATCTTCTTTTGCTTTCG
TTTGGTGTTCTGCTTGGTATGGAATTTTTACAGATCTCGAAATACAGGTT
ATTGATTGTCTCCACTATTTCATTTGGATCTTCACTAAGTGTCTCTTTCC
ATTTGACATTTTGCACCTGTTCTTTTATGTTATCCCAGTCTATTTCGTCA
GCAAAGAAGTTCAGGGTATCAAATCCTGTACCGTCATCTTCATTGAGTAT
TAACATTTAAACAGGTTTCAACAAGAACAATCTGGTGGTGTGATGTGCTG
TGTAGGACAGGAACTGTTGTGCAGTTGTGGATAATGTTTTCATTGTTTGT
AAAAACAAGATCAAGTATGTTTCCATCTTTATGTGTGGGAGTGTCCACAT
ATTGGGAGATGAAATGGTCATTGCAAAATTGATTTAGAGCATTTTGTACG
ATTCTGTCATCCAAAGGACAGCCAGATTTTGGTGTACCAGCTGGCCATGT
AGCTTTTGGGCAGGTTGAAGTCACCCAGAGTCAGCACCAAAAATTATACT
TGGGTTGGATCCTAATGCTTTGCTCCATTGAGAGGGGTAGTAAAATTATT
AGCCGTTGATGGATTTCCATTGCTTCTATCGTCTGGTTGACGGTAGACAA
CCAGCAGGACCATATTCTCAGCTTTTGAGTATAGACTGAGAagttgaaat
gtttttgaagaGTATGTATTAAGTTCTTCAAAATGATGCTCCGATGTCtt
tccttatataaaaacaaactccACCAGTATGTCTTCCTCTGCTTTTCTTC
CTTCTTGAAGAGTCAAAGCGGAATAACGTAAAATTTTCTATCTGAAGTTC
TGCACCTTTATGACCCTTATGAAGCCAGGTTTCAGAAAGTCcaataaata
ataaatttttgttgCATATATTGTTTGTTATAAAAGGGACTTTGCTCGCA
ACAGTTTCGGGGTAAAGTCCTTGAACATTAAAAAAAGCGAAAGTGTTTAT
TAACAATGGATTTGATTGAATTGGTTTTGATTTGGTAGGTTCTGTACAGA
TCTCTATTTATATatgggatgggtgaaaacataacaatctgacgaatata
cAGTTAGGGAAATCATCCAGGATCCTGTCATTCTATAAGctagcaaaaac
taaatgatacttgtaaacttaagtttcttatcATTTTCCaacgaaaacaa
ccaaaaacattgctattCCCGATCCAAAGCCAgagaccaaaaaaaattat
cttccaagattatggcgcccttttgaaTCTATCATtgaggccatctaaaa
tggtggaaagagttgcggaaagacaaaggcACCCGCTGCTTcaagggtgg
taacgccaaaacgcccaatataaTCTTCCAACAGAAAGCGAGTTAGTTGC
CGAAGCTGGCCGAAGCGTGTTTCAAttaatatcattaattataaaaagaa
tatcttatgtgcttaccttcagtaaacttttattgcttcattgaaaatta
agaaggtaagaagataaaaaatgtgctgggtaattttcattgtaactgtt
tggtcaatcatcactgaaagtttgaaaaaaaattttcgacgcaaaaaaaa
attcagccaattaaaaacacagtgtgcttatacttactatgtttgctaca
tcgtctaggctaaaaaagtgcgaaaagacacaaACGCCACTTTTTAAATG
AGCGctgttacaattttttttattgcggccgcgtacaggaactcgccaaa
tgttcctaactgatatacatctcaaaatcgtaaggactGCGTtcatctaa
aaggactgggaatgacaacaaagttgcgtgataaTGTTTGAAATTAGGGG
CGCcatataaaatttttgtttttctccgGCGCTCAACAAGATTCTTATTG
TAGAATTTCTGGAGGAGAactattgggccattccagaatttgtctgtaac
attGGGACGAACAACACGGGATTTCAGAAGGCAaaagttttcatcaaaat
tcaaaatttccaaggcgagagaaaaaatgtatgaatttctaaagcaattg
aattaaaatcaGTAAAAAAGGGTGGAATTACAGGTTTTATTATTTGAGGC
GTGCgatagcacgcgcacacctccacacacacctaaaatcttTAAGGAGT
GCGATCATTCACACGCCACAGATTTAGAATCGCAACTAAAAAATGTGAAc
agcactccttatcacacgtCTAAATTACTGAACTTGAGGCTTTAGGAGTG
TGATTAACCACACCCCTGGAATTTTTAAATGACACAGACTGAATTACCAA
CACATTTTGCTAAAATACATGAAtttatcatcaaaatttcggaccaccac
tgaaaaaaaaattattttcaaggctagaaaaaaatgatctggaatggccc
attttcCTCAGAACGCCTTCAGAGGTTACctgttatcaggttagaaaAAC
CAGGCGACACGGGATTTCACATAATTTAACCTATCATAAAATCTCCTCAA
CAACACAGCTTTTTAAACTTATTAAAAAACCATATCAAAACATCAGCTAC
ATGGTTTGTGGCTCAATTATAGTTTGATAGGTTCGATCGCTTTGCCCTTT
CTACTTTGTCCACGCCCCTTAAACTTGACCACTTTTTAATTGGGGGTTTA
TAGGTTTACACCAACTTAATGCCAAAATCTCATTTGGCCTGGAATTCCCA
AGTTATCaacattttgtttcttttgtcgAATTTTAACTtgggtatttttt
tcaaatcattaaccatattacttcaaataaacacCCGGgcgtatatttat
ttttttcgattttaggagggcGTATTCGAGGGAGGAGGGCATTTAaaaga
aggggcgtttattaaattatttgagTCTAACGTcaaatatttagagcaaa
tctACTTTAGTTTTAGTTCTATACAAGGATTTCAGTGcaaatttttttgg
gtcggcaactAAAATTGCATCAAAACTGATCTGGTTACAAAAAagactaa
aatcttccttttcaatcCTAATCAAAGCTTTTATCAAAGTATTTAAAAGT
CACAAGtttttaataaacgcccctcccctaGAGTTCATttgaagggggcg
tttattagaggGGGTGTTTGTTAAATTATTCTCCTTTTAGGAGAGGcgtt
tttaaaagaaaggggcctttattcgaagtaatatggtatctgaagaagct
aatcaaatttcagaaaacactAAAACTTTTCCCACATAATAATAAGAATC
AAAGGACCAATGAATTTTAACAACTCAAAATCCTAAAAGACAAACCAAAT
TTCACTAGAGACACAGTACTAGAACAATCTAGAACTAGAACAAACTAGAA
CATCAACCCTTACCTTAGAACACACAAAACAATGAGCCTTTATTATAGTA
ACAGTATCCAACCAATATGCTAACAACGCTAAATCATTGAGTAATTTACT
AAAATATTACATAATGTCTCCATTGAACTCAACAAAAGTGCAACCCAGAA
AAATCAAGATGTAgatctcaaattttcaattgactGGGCAAAATAAGAAC
CACAATTACAATTTCCAGCGGCTGCTCAGCTCCACACGGAGGACACCCTG
TTCCCAGGGAGGGTTTGGCACTTTGCTCTCAGATAGGCCCTGATGTCGAT
GAACTGTCTGTAAAAATTATACAATTTACACTGCTATTTTAGTTTACCAG
TTGCACTTTGGTAATATCTGCAGAAAGAAAACCCTATTCAACAATACTTC
CTACGAAATTGAAGGTTTTAGTCCTGATagtgaaatgtttttttctgttt
ttcaaattttcagNCAACAATACTTCCTAAGAAATTGAAGGTTTTAGTCC
TGAtagtgaaatgttttttttctgtttttcaaattttcaggttAATGGGG
AAACCAAAAAGTGAACTGACATTTGAAGAATTGAAACAGCGAGAAGAGGA
GGAGTTCAAGACTGGACCCCTATCTGTTTTGATGTCATCTGTGAAGAATA
ACACTCAAGTACTCATAAACTGCAGAAACAACAGAAAGTTATTGGGTCGT
GTGAAAGCTTTTGATAGACATTGTAACATGGTATTGGAAAATGTTAAAGA
AATGTGGTATGAAATCCCCAAAACaggaaaaggaaagaaagcaaAACCTA
TCAACAAGGACAGATATATTGCTAAAATGTTTCTACGTGGAGATTCAGTG
ATTTTGGTTTTGAAAAACCCTCTTGCATTGAAATAGATATGGGACCCTTT
TGCAGGTGTAATGTAAATACCCTTTAAATAAGTTATAACAACTATCTTTG
AAAAGCAAGGCACCTGGATTGTAATTGCAATGCCATTGGATGAGTTCATA
CGAATTGGGAAATCTGTAGAACATCCTTAAATGTTGATATCGTTTTGAAA
GAAAGACATCTGACAACaacattttgaaacattttttaatgtGATAATGG
ATTTCCGAGATCACCAgataattttcacatttttataaataaagactttt
ttatcCTTGTCTCTCAAAAGTAAAACACAGAATGACCTGACCTACAATCA
AATcattataattattata Coding sequence (CDS) from alignment at sc0000313:62316..70284+ >TCONS_00018909 ID=TCONS_00018909|Name=TCONS_00018909|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000313:62316..70284+ (Clytia hemisphaerica)
ATGTCTACgttAATGGGGAAACCAAAAAGTGAACTGACATTTGAAGAATT
GAAACAGCGAGAAGAGGAGGAGTTCAAGACTGGACCCCTATCTGTTTTGA
TGTCATCTGTGAAGAATAACACTCAAGTACTCATAAACTGCAGAAACAAC
AGAAAGTTATTGGGTCGTGTGAAAGCTTTTGATAGACATTGTAACATGGT
ATTGGAAAATGTTAAAGAAATGTGGTATGAAATCCCCAAAACaggaaaag
gaaagaaagcaaAACCTATCAACAAGGACAGATATATTGCTAAAATGTTT
CTACGTGGAGATTCAGTGATTTTGGTTTTGAAAAACCCTCTTGCATTGAA
ATAGATGTCTACgttAATGGGGAAACCAAAAAGTGAACTGACATTTGAAG
AATTGAAACAGCGAGAAGAGGAGGAGTTCAAGACTGGACCCCTATCTGTT
TTGATGTCATCTGTGAAGAATAACACTCAAGTACTCATAAACTGCAGAAA
CAACAGAAAGTTATTGGGTCGTGTGAAAGCTTTTGATAGACATTGTAACA
TGGTATTGGAAAATGTTAAAGAAATGTGGTATGAAATCCCCAAAACagga
aaaggaaagaaagcaaAACCTATCAACAAGGACAGATATATTGCTAAAAT
GTTTCTACGTGGAGATTCAGTGATTTTGGTTTTGAAAAACCCTCTTGCAT
TGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018909-exon-sc0000313-1491911889:62316..62601 | TCONS_00018909-exon-sc0000313-1491911889:62316..62601 | Clytia hemisphaerica | exon |
| TCONS_00018909-exon-sc0000313-1510915933:62316..62601 | TCONS_00018909-exon-sc0000313-1510915933:62316..62601 | Clytia hemisphaerica | exon |
| TCONS_00018909-exon-sc0000313-1575043694:62316..62601 | TCONS_00018909-exon-sc0000313-1575043694:62316..62601 | Clytia hemisphaerica | exon |
| TCONS_00018909-exon-sc0000313-1491911889:69606..70284 | TCONS_00018909-exon-sc0000313-1491911889:69606..70284 | Clytia hemisphaerica | exon |
| TCONS_00018909-exon-sc0000313-1510915933:69606..70284 | TCONS_00018909-exon-sc0000313-1510915933:69606..70284 | Clytia hemisphaerica | exon |
| TCONS_00018909-exon-sc0000313-1575043694:69606..70284 | TCONS_00018909-exon-sc0000313-1575043694:69606..70284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000313 | supercontig | sc0000313:62316..70284 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008380 | RNA splicing |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030532 | small nuclear ribonucleoprotein complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008380 |
RNA splicing |
| cellular_component |
GO:0030532 |
small nuclear ribonucleoprotein complex |
Blast
BLAST of TCONS_00018909 vs. Swiss-Prot (Human)
Match: SMD2 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 7.013e-39 Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = 3
Query: 285 TLMGKPKSXXXXXXXXXXXXXXXXXGPLSVLMSSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYE-IPKTGKGKKAKPINKDRYIAKMFLRGDSVILVLKNPL 620
+L+ KPKSE+T EEL++REEEEF TGPLSVL SVKNNTQVLINCRNN+KLLGRVKAFDRHCNMVLENVKEMW E KK+KP+NKDRYI+KMFLRGDSVI+VL+NPL
Sbjct: 2 SLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
The following BLAST results are available for this feature:
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