TCONS_00018909-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018909-protein
Unique NameTCONS_00018909-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length117

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018909-protein ID=TCONS_00018909-protein|Name=TCONS_00018909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MSTLMGKPKSELTFEELKQREEEEFKTGPLSVLMSSVKNNTQVLINCRNN
RKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKGKKAKPINKDRYIAKMF
LRGDSVILVLKNPLALK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010599XLOC_010599Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018909TCONS_00018909Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027248Sm_D2
IPR010920LSM_dom
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0030532 small nuclear ribonucleoprotein complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 33..111
e-value: 4.6E-19
score: 79.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 38..109
e-value: 1.0E-18
score: 66.7
NoneNo IPR availableGENE3D2.30.30.100coord: 21..112
e-value: 8.5E-30
score: 101.9
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 25..113
e-value: 1.2038E-61
score: 184.456
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 28..112

Blast
[Close]
BLAST of TCONS_00018909-protein vs. Swiss-Prot (Human)
Match: SMD2 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.297e-47
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = 0 
Query:    3 TLMGKPKSELTFEELKQREEEEFKTGPLSVLMSSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYE-IPKTGKGKKAKPINKDRYIAKMFLRGDSVILVLKNPL 114
            +L+ KPKSE+T EEL++REEEEF TGPLSVL  SVKNNTQVLINCRNN+KLLGRVKAFDRHCNMVLENVKEMW E        KK+KP+NKDRYI+KMFLRGDSVI+VL+NPL
Sbjct:    2 SLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114
The following BLAST results are available for this feature:
BLAST of TCONS_00018909-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMD21.297e-4777.88Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
back to top