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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018908 ID=TCONS_00018908|Name=TCONS_00018908|organism=Clytia hemisphaerica|type=transcript|length=313bp
CCGAATGAAAGAATTTCTCGAAAGCACCAAAGAAAAATCGGATTTGATAA
CCGCCTTCAAAAACCGGGAAGttaaagaaaaattggacTTCAGAAAGTCA
GCAAAACCATACAAGTTCAGCAAAGTTCAAATAGCTTTACTTGATAAATA
TTACCAAAACAAACGTGGAATCCTTGACGAGGACACAAAAGAAGCCTTAT
CTAAAATCGCTGACATACCTGCGAAAAACGCTGTCATTTGGTTtcaaaat
gctagaaaacgacaAAGAGATGGGGAATATACACCGGGAGAACACCAGGC
GAAAATTCAAAAG Run BLAST on NCBI protein sequence of TCONS_00018908-protein >TCONS_00018908-protein ID=TCONS_00018908-protein|Name=TCONS_00018908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
RMKEFLESTKEKSDLITAFKNREVKEKLDFRKSAKPYKFSKVQIALLDKY
YQNKRGILDEDTKEALSKIADIPAKNAVIWFQNARKRQRDGEYTPGEHQA
KIQK Run BLAST on NCBI transcript from alignment at sc0000313:27783..28923+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018908 ID=TCONS_00018908|Name=TCONS_00018908|organism=Clytia hemisphaerica|type=transcript|length=1141bp|location=Sequence derived from alignment at sc0000313:27783..28923+ (Clytia hemisphaerica)
CCGAATGAAAGAATTTCTCGAAAGCACCAAAGAAAAATCGGATTTGATAA
CCGCCTTCAAAAACCGGGAAGGTAAgttaaatttaatttcaaacgATTTT
GATCAACGAAATGCTTTTTGTACTCACGCCCTAATGTTTTCAAGTTTCTA
TGTAAGCGTCGCCTCTAATACATTTCCACTCACGACACTCTCCCTCCAGG
CGAAAATtgtgaatttgttttaaagctCTGTAATTAATTTTATCTAATCT
ATAAGAAAACATAACTCaaagatgaaataaaaataattgtactaatttta
ttgaaaaatcgTGTCTATTGCCTATAAGATCCGAAGCTTGATGGTAAGAT
TGCGTTTAGATAATAGTCTattattatttgtttgttttttagttaaagaa
aaattggacTTCAGAAAGTCAGCAAAACCATACAAGTTCAGCAAAGTTCA
AATAGCTTTACTTGATAAATATTACCAAAACAAACGTGGAATCCTTGACG
AGGACACAAAAGAAGCCTTATCTAAAATCGCTGACATACCTGCGAAAAAC
GTAAGTAAAAGATGATTTTCTCTGTGGTTATCCACGCCTTTCAGTTTTaa
tcacagatttctgtaaagcccgaaaggctagatggcgtgcttcaagctct
tccaagcaagaaaaagtgagtaccgggaaaaatatttctgctattgtttc
cgaaaatcggcaaagcttctgattggtcaagcgctgaaattctattgtaa
tgtcacgtgacttagataGGATTTCCAATCTAACTTcgacacacttttca
gcaaaagctagagatctagccctttgggctttacgCATCGTTGGTTTTAA
TCTAGGAGCCTATAGGCTAATTTGCGTTGTGGGCGAAAAGACGAGGATTT
TGCTCCGTGCTATTTAGGCAGGGTCAATAAAAATTCATCAGCGAGTATGG
TTGCTATTGGTCTCAAAGTTGGGAATTgtgattttagaaaatttggaaaa
tctagacacgccctTAACCCGCACTTTGACATCAAGCACTATTTACCTAT
CATTTAGGCTGTCATTTGGTTtcaaaatgctagaaaacgacaAAGAGATG
GGGAATATACACCGGGAGAACACCAGGCGAAAATTCAAAAG Coding sequence (CDS) from alignment at sc0000313:27783..28923+ >TCONS_00018908 ID=TCONS_00018908|Name=TCONS_00018908|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000313:27783..28923+ (Clytia hemisphaerica)
CGAATGAAAGAATTTCTCGAAAGCACCAAAGAAAAATCGGATTTGATAAC
CGCCTTCAAAAACCGGGAAGttaaagaaaaattggacTTCAGAAAGTCAG
CAAAACCATACAAGTTCAGCAAAGTTCAAATAGCTTTACTTGATAAATAT
TACCAAAACAAACGTGGAATCCTTGACGAGGACACAAAAGAAGCCTTATC
TAAAATCGCTGACATACCTGCGAAAAACGCTGTCATTTGGTTtcaaaatg
ctagaaaacgacaAAGAGATGGGGAATATACACCGGGAGAACACCAGGCG
AAAATTCAAAAGCGAATGAAAGAATTTCTCGAAAGCACCAAAGAAAAATC
GGATTTGATAACCGCCTTCAAAAACCGGGAAGttaaagaaaaattggacT
TCAGAAAGTCAGCAAAACCATACAAGTTCAGCAAAGTTCAAATAGCTTTA
CTTGATAAATATTACCAAAACAAACGTGGAATCCTTGACGAGGACACAAA
AGAAGCCTTATCTAAAATCGCTGACATACCTGCGAAAAACGCTGTCATTT
GGTTtcaaaatgctagaaaacgacaAAGAGATGGGGAATATACACCGGGA
GAACACCAGGCGAAAATTCAAAAGCGAATGAAAGAATTTCTCGAAAGCAC
CAAAGAAAAATCGGATTTGATAACCGCCTTCAAAAACCGGGAAGttaaag
aaaaattggacTTCAGAAAGTCAGCAAAACCATACAAGTTCAGCAAAGTT
CAAATAGCTTTACTTGATAAATATTACCAAAACAAACGTGGAATCCTTGA
CGAGGACACAAAAGAAGCCTTATCTAAAATCGCTGACATACCTGCGAAAA
ACGCTGTCATTTGGTTtcaaaatgctagaaaacgacaAAGAGATGGGGAA
TATACACCGGGAGAACACCAGGCGAAAATTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018908-exon-sc0000313-1491911889:27783..27853 | TCONS_00018908-exon-sc0000313-1491911889:27783..27853 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1510915933:27783..27853 | TCONS_00018908-exon-sc0000313-1510915933:27783..27853 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1575043694:27783..27853 | TCONS_00018908-exon-sc0000313-1575043694:27783..27853 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1491911889:28175..28332 | TCONS_00018908-exon-sc0000313-1491911889:28175..28332 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1510915933:28175..28332 | TCONS_00018908-exon-sc0000313-1510915933:28175..28332 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1575043694:28175..28332 | TCONS_00018908-exon-sc0000313-1575043694:28175..28332 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1491911889:28840..28923 | TCONS_00018908-exon-sc0000313-1491911889:28840..28923 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1510915933:28840..28923 | TCONS_00018908-exon-sc0000313-1510915933:28840..28923 | Clytia hemisphaerica | exon |
| TCONS_00018908-exon-sc0000313-1575043694:28840..28923 | TCONS_00018908-exon-sc0000313-1575043694:28840..28923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000313 | supercontig | sc0000313:27783..28923 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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