TCONS_00018899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018899
Unique NameTCONS_00018899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018899 ID=TCONS_00018899|Name=TCONS_00018899|organism=Clytia hemisphaerica|type=transcript|length=604bp
NCTCGAGCGGGTACTTCCATACAACTAACGGTGGACTGATTGATGATTCG
AGCAGGCCTGTTTGTACTTTAGATGATTCGGAGGTACCTCCTCATTCCGT
TGGAGGTTTGAGTCAGAGGGCTCACAGTGATGACTCGAGCGGGTACCTTC
ATCCTGATAACGCTGGTTTGCAAGATCAGTCTGAACTAGGAGATTCTGAT
GCTGAGGATGTGGTTCTAAAAGAATCTGGTCATCATAGTGTCTCCCCTAT
CATATCAGATCAATTATTGAATAGTACTAAAGATGAAATCTCCGACGGCT
CCAAGGATGAATTTGAGGATGAACCTTCGACATCAAGCCACCAACTCGCA
TATCATGAATGTCTTCAATTTGGTCGTCCAAAACGTATTGGGAAACCAAA
GAAGTTTCTCACCTATGACAAACGTGGTGTACCCTCCCATGTTTCTGCCC
AGGCCACCCCCCCCCTAATAAatgatttcatgattttgttTCAGGAGTTT
GTGTACATGTTGTTGTGGTTCAAATGTATTCTAATTATATTCAaactctt
ttttgtttcaaattggTCAACAAACCCCTTGCCCAACAACTGATGGTCGT
CGAT
Run BLAST on NCBI

protein sequence of TCONS_00018899-protein

>TCONS_00018899-protein ID=TCONS_00018899-protein|Name=TCONS_00018899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
SSGYFHTTNGGLIDDSSRPVCTLDDSEVPPHSVGGLSQRAHSDDSSGYLH
PDNAGLQDQSELGDSDAEDVVLKESGHHSVSPIISDQLLNSTKDEISDGS
KDEFEDEPSTSSHQLAYHECLQFGRPKRIGKPKKFLTYDKRGVPSHVSAQ
ATPPLINDFMILFQEFVYMLLWFKCILIIFKLFFVSNWSTNPLPNN
Run BLAST on NCBI

transcript from alignment at sc0000310:325253..325856

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018899 ID=TCONS_00018899|Name=TCONS_00018899|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at sc0000310:325253..325856 (Clytia hemisphaerica)
ATCGACGACCATCAGTTGTTGGGCAAGGGGTTTGTTGAccaatttgaaac
aaaaaagagttTGAATATAATTAGAATACATTTGAACCACAACAACATGT
ACACAAACTCCTGAaacaaaatcatgaaatcatTTATTAGGGGGGGGGTG
GCCTGGGCAGAAACATGGGAGGGTACACCACGTTTGTCATAGGTGAGAAA
CTTCTTTGGTTTCCCAATACGTTTTGGACGACCAAATTGAAGACATTCAT
GATATGCGAGTTGGTGGCTTGATGTCGAAGGTTCATCCTCAAATTCATCC
TTGGAGCCGTCGGAGATTTCATCTTTAGTACTATTCAATAATTGATCTGA
TATGATAGGGGAGACACTATGATGACCAGATTCTTTTAGAACCACATCCT
CAGCATCAGAATCTCCTAGTTCAGACTGATCTTGCAAACCAGCGTTATCA
GGATGAAGGTACCCGCTCGAGTCATCACTGTGAGCCCTCTGACTCAAACC
TCCAACGGAATGAGGAGGTACCTCCGAATCATCTAAAGTACAAACAGGCC
TGCTCGAATCATCAATCAGTCCACCGTTAGTTGTATGGAAGTACCCGCTC
GAGN

Coding sequence (CDS) from alignment at sc0000310:325253..325856

>TCONS_00018899 ID=TCONS_00018899|Name=TCONS_00018899|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0000310:325253..325856 (Clytia hemisphaerica)
TCAGTTGTTGGGCAAGGGGTTTGTTGAccaatttgaaacaaaaaagagtt
TGAATATAATTAGAATACATTTGAACCACAACAACATGTACACAAACTCC
TGAaacaaaatcatgaaatcatTTATTAGGGGGGGGGTGGCCTGGGCAGA
AACATGGGAGGGTACACCACGTTTGTCATAGGTGAGAAACTTCTTTGGTT
TCCCAATACGTTTTGGACGACCAAATTGAAGACATTCATGATATGCGAGT
TGGTGGCTTGATGTCGAAGGTTCATCCTCAAATTCATCCTTGGAGCCGTC
GGAGATTTCATCTTTAGTACTATTCAATAATTGATCTGATATGATAGGGG
AGACACTATGATGACCAGATTCTTTTAGAACCACATCCTCAGCATCAGAA
TCTCCTAGTTCAGACTGATCTTGCAAACCAGCGTTATCAGGATGAAGGTA
CCCGCTCGAGTCATCACTGTGAGCCCTCTGACTCAAACCTCCAACGGAAT
GAGGAGGTACCTCCGAATCATCTAAAGTACAAACAGGCCTGCTCGAATCA
TCAATCAGTCCACCGTTAGTTGTATGGAAGTACCCGCTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010592XLOC_010592Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018899-proteinTCONS_00018899-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018899-exon-sc0000310-1491911889:325253..325856TCONS_00018899-exon-sc0000310-1491911889:325253..325856Clytia hemisphaericaexon
TCONS_00018899-exon-sc0000310-1510915933:325253..325856TCONS_00018899-exon-sc0000310-1510915933:325253..325856Clytia hemisphaericaexon
TCONS_00018899-exon-sc0000310-1575043694:325253..325856TCONS_00018899-exon-sc0000310-1575043694:325253..325856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000310supercontigsc0000310:325253..325856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0900714	0.265302	0.102917	0	0.635117	0.978735	0.620681	1.49924	1.50874	1.70011	2.49542	2.32279	1.55741	2.30004	0.05132	0	0.0683398	0	0	0	0.175266	0.128618	0.205965	0.093626	1.67395	3.14503	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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