TCONS_00018893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018893
Unique NameTCONS_00018893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018893 ID=TCONS_00018893|Name=TCONS_00018893|organism=Clytia hemisphaerica|type=transcript|length=271bp
CTGTGATATTCATACTTGTATCTCTTTGAAACGTTTCGAATTGTTCGTAT
GCAGTAAACATTGCCTGATCTTTTGACACTGCATAGAGTTCTCTCAATTT
GGTTATAAGCACATCTAAACCATCTTCGACATTTAGCTGTTCTTTCGTTA
ATGTTGCACATGCTTGGCGAACCTTTGGGGATAAACTGAGATACAACACA
GGTCCCTGTTTTGTTTTAGCTAAATCAGTTACTAACTGCcacatttcaat
ttcatgtaACCAATGTTCAAA
Run BLAST on NCBI

transcript from alignment at sc0000310:43296..43566

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018893 ID=TCONS_00018893|Name=TCONS_00018893|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0000310:43296..43566 (Clytia hemisphaerica)
TTTGAACATTGGTtacatgaaattgaaatgtgGCAGTTAGTAACTGATTT
AGCTAAAACAAAACAGGGACCTGTGTTGTATCTCAGTTTATCCCCAAAGG
TTCGCCAAGCATGTGCAACATTAACGAAAGAACAGCTAAATGTCGAAGAT
GGTTTAGATGTGCTTATAACCAAATTGAGAGAACTCTATGCAGTGTCAAA
AGATCAGGCAATGTTTACTGCATACGAACAATTCGAAACGTTTCAAAGAG
ATACAAGTATGAATATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010586XLOC_010586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018893-exon-sc0000310-1491911889:43296..43566TCONS_00018893-exon-sc0000310-1491911889:43296..43566Clytia hemisphaericaexon
TCONS_00018893-exon-sc0000310-1510915933:43296..43566TCONS_00018893-exon-sc0000310-1510915933:43296..43566Clytia hemisphaericaexon
TCONS_00018893-exon-sc0000310-1575043694:43296..43566TCONS_00018893-exon-sc0000310-1575043694:43296..43566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000310supercontigsc0000310:43296..43566 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.45268	1.12842	7.40365	2.65218	5.15182	5.77732	6.35874	13.0948	3.76685	7.22593	3.50081	6.48564	4.25704	5.30851	1.32373	3.18326	0.419459	2.45113	0	2.75189	0.806429	6.85914	2.28421	1.47416	7.7731	11.504	0	2.11564	0	0.0888293
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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