|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018880 ID=TCONS_00018880|Name=TCONS_00018880|organism=Clytia hemisphaerica|type=transcript|length=1665bpRun BLAST on NCBI protein sequence of TCONS_00018880-protein >TCONS_00018880-protein ID=TCONS_00018880-protein|Name=TCONS_00018880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp DTLTVKSEGSHCNVCSRSFETYIYHNDGYIKVSSNLTMAKVDDISTLVLKRun BLAST on NCBI transcript from alignment at sc0000310:359..92399+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018880 ID=TCONS_00018880|Name=TCONS_00018880|organism=Clytia hemisphaerica|type=transcript|length=92041bp|location=Sequence derived from alignment at sc0000310:359..92399+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000310:359..92399+ >TCONS_00018880 ID=TCONS_00018880|Name=TCONS_00018880|organism=Clytia hemisphaerica|type=CDS|length=16620bp|location=Sequence derived from alignment at sc0000310:359..92399+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018880 vs. Swiss-Prot (Human)
Match: KCNH7 (Potassium voltage-gated channel subfamily H member 7 OS=Homo sapiens GN=KCNH7 PE=2 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 6.761e-36 Identity = 105/418 (25.12%), Postives = 202/418 (48.33%), Query Frame = 2
Query: 308 DALFVLNIILKFNIGYIDKGT-VVLNKEKIKDRYFKNRFIIDVISCFLLPLDYIEYFDAAAEDFKKVARALKVLKILRLYSLTSYFGHYEDQLGFNTKALRSFKYFLIAYTLIHSLSCGWFMLACPNEADVKGSFKCYSDGW------AVVKKQNLENLST----LQRYIKCLYWATITATSTGYGDIHAVNPSEKWYSVITMLVGIGFFFGPILGYMASTLTNSESKRAKYTHRMGVISEHLNDKSVSSWTQNKVKGYYEYLWTRHQGDVKSGLFTDLPLSFQAEIALAQNKHVLEKAPLFRNIPLECLRMITVAIQPISYLPKQFIFSKDDIKHTLFYIKKGSVEVLDENDEKPIKLLREGSFFGEVSLLLNIP--RCATVRALSYCELLALERCDLTKIMKHFPEVSEQLLQTIQ 1522
D +F+++I++ F Y+++ VV + KI YFK F+ID+++ +P D + F + +++ + LK ++LRL + Y + G L + LIA H L+C W+ + +V+ + GW + K+ N + S+ +Y+ LY+ + TS G+G++ SEK +S+ ML+G + I G +++ + S A+Y +M + E + + + + +++ Y+++ WT G + + P QA+I L N+ +L+ FR CLR + + + P + D+ L+++ +GS+E+L D+ + +L + FGE+ L P A VRAL+YC+L ++R DL +++ +PE S+ L ++
Sbjct: 459 DIMFIIDILINFRTTYVNQNEEVVSDPAKIAIHYFKGWFLIDMVAA--IPFDLL-IFGSGSDETTTLIGLLKTARLLRLVRVARKLDRYS-EYGAAVLMLLMCIFALIA----HWLACIWYAIG-----NVERPYLTDKIGWLDSLGQQIGKRYNDSDSSSGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIG-SLMYASIFGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFPECLQADICLHLNQTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYFLSRGSIEIL--KDDIVVAILGKNDIFGEMVHLYAKPGKSNADVRALTYCDLHKIQREDLLEVLDMYPEFSDHFLTNLE 860 The following BLAST results are available for this feature:
BLAST of TCONS_00018880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.