TCONS_00018880-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018880-protein
Unique NameTCONS_00018880-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018880-protein ID=TCONS_00018880-protein|Name=TCONS_00018880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
DTLTVKSEGSHCNVCSRSFETYIYHNDGYIKVSSNLTMAKVDDISTLVLK
KKQANCVSPGSWYIQLWEGLIALTCLLTTILVTFQIAFQASQNGLMLMLH
TFDALFVLNIILKFNIGYIDKGTVVLNKEKIKDRYFKNRFIIDVISCFLL
PLDYIEYFDAAAEDFKKVARALKVLKILRLYSLTSYFGHYEDQLGFNTKA
LRSFKYFLIAYTLIHSLSCGWFMLACPNEADVKGSFKCYSDGWAVVKKQN
LENLSTLQRYIKCLYWATITATSTGYGDIHAVNPSEKWYSVITMLVGIGF
FFGPILGYMASTLTNSESKRAKYTHRMGVISEHLNDKSVSSWTQNKVKGY
YEYLWTRHQGDVKSGLFTDLPLSFQAEIALAQNKHVLEKAPLFRNIPLEC
LRMITVAIQPISYLPKQFIFSKDDIKHTLFYIKKGSVEVLDENDEKPIKL
LREGSFFGEVSLLLNIPRCATVRALSYCELLALERCDLTKIMKHFPEVSE
QLLQTIQRRCEEAATHIDNKKKGIIKNYGPDRKRFTIDKAVIILADFMDE
NEGT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010578XLOC_010578Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018880TCONS_00018880Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003938K_chnl_volt-dep_EAG/ELK/ERG
IPR000595cNMP-bd_dom
IPR005821Ion_trans_dom
IPR014710RmlC-like_jellyroll
IPR018490cNMP-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003938Potassium channel, voltage-dependent, EAG/ELK/ERGPRINTSPR01463EAGCHANLFMLYcoord: 260..277
score: 41.49
coord: 472..480
score: 71.88
coord: 286..297
score: 47.66
coord: 212..222
score: 36.08
coord: 110..119
score: 32.81
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 392..507
e-value: 6.0E-21
score: 85.6
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 411..493
e-value: 4.1E-18
score: 65.1
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 392..509
score: 25.23
NoneNo IPR availableGENE3D1.20.120.350coord: 64..197
e-value: 4.2E-10
score: 38.9
NoneNo IPR availableGENE3D1.10.287.630coord: 319..371
e-value: 2.6E-7
score: 30.4
NoneNo IPR availableGENE3D1.10.287.70coord: 198..318
e-value: 3.2E-17
score: 61.5
NoneNo IPR availableCDDcd00038CAP_EDcoord: 392..503
e-value: 9.47198E-24
score: 95.4705
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 61..303
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 65..315
e-value: 1.0E-20
score: 73.9
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 372..518
e-value: 2.5E-34
score: 117.6
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 318..509

Blast
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BLAST of TCONS_00018880-protein vs. Swiss-Prot (Human)
Match: CNGA2 (Cyclic nucleotide-gated olfactory channel OS=Homo sapiens GN=CNGA2 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.382e-37
Identity = 112/454 (24.67%), Postives = 213/454 (46.92%), Query Frame = 0 
Query:   60 GSWYIQLWEGLIALTCLLTTILVTFQIAFQASQNGLMLML----HTFDALFVLNIILKFNIGYIDKGTVVLNKEKIKDRYFKN-RFIIDVISCFLLPLDYIEYFDAAAEDFKKVARALKVLKILRLYSLTSYFGHYEDQLGFNTKALRSFKYFLIAYTLIHSLSCGWFMLACPNEADVKGSFKCYSDGWAVVKKQNLENLSTLQRYIKCLYWATITATSTGYGDIHAVNPSEKWYSVITMLVGIGFFFGPILGYMASTLTNSESKRAKYTHRMGVISEHLNDKSVSSWTQNKVKGYYEYLWTRHQGDVKSGLFTDLPLSFQAEIALAQNKHVLEKAPLFRNIPLECLRMITVAIQPISYLPKQFIFSKDDIKHTLFYIKKGSVEVLDENDEKPIKLLREGSFFGEVSLL------LNIPRCATVRALSYCELLALERCDLTKIMKHFPEVSEQL 502
            G WY   W  +IA+  L    L+  +  F   Q G  L+     +  D +++ ++ ++   G++++G +V + +K++D Y    +F +DV S  ++P D I YF  A +      R  ++L   R++    +F   E +  +     R     L    +IH  +C ++ ++         S     D W      + E     + YI CLYW+T+T T+ G      V   E  + +   L+G+   F  I+G + S ++N  + RA++  ++  +  ++  + VS   + KV  +++YLWT  +   +  +  +LP   +AEIA+  +   L+K  +F +     L  + + ++P  + P  +I  K DI   ++ IK+G + V+ ++      LL  GS FGE+S+L      +   R A +R+L Y +L  L + DL + +  +P+  + L
Sbjct:  137 GDWYY-CWLFVIAMPVLYNWCLLVARACFSDLQKGYYLVWLVLDYVSDVVYIADLFIRLRTGFLEQGLLVKDTKKLRDNYIHTLQFKLDVAS--IIPTDLI-YF--AVDIHSPEVRFNRLLHFARMFE---FFDRTETRTNY-PNIFRISNLVLYILVIIHWNACIYYAIS--------KSIGFGVDTWVYPNITDPEYGYLAREYIYCLYWSTLTLTTIGETP-PPVKDEEYLFVIFDFLIGV-LIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGMEAKVIRWFDYLWTNKKTVDEREILKNLPAKLRAEIAINVHLSTLKKVRIFHDCEAGLLVELVLKLRPQVFSPGDYICRKGDIGKEMYIIKEGKLAVVADDGVTQYALLSAGSCFGEISILNIKGSKMGNRRTANIRSLGYSDLFCLSKDDLMEAVTEYPDAKKVL 570
The following BLAST results are available for this feature:
BLAST of TCONS_00018880-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNGA22.382e-3724.67Cyclic nucleotide-gated olfactory channel OS=Homo ... [more]
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