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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018874 ID=TCONS_00018874|Name=TCONS_00018874|organism=Clytia hemisphaerica|type=transcript|length=1515bp
CATATATATACAGAAATCAGTCAAATATCtagctttaaaatttttttttt
aatatttaaaagcCCCCGCAAACATTTGTTGAATAGTAAATAGGGGGACA
AATAACCTCTCTCAGAGAGAGTATATTTCTCCCTAGAATGATAATAGTCT
CTAAGTACTGGATAGAGAAGTCCTCCTTTCCATTCCCAATGTTGCAAGAA
AAGATTTACTACTTTCCAATATGCTCGCTTGTTGGAGGATATTATTCACC
ATTTCAACAGAATATCCAGAGTTGATCGAACGTTCTCTCAAGAGAGCAAC
AGCATCAGAAGAAAGTCTGAATTCCGAGAACAAAGGCGTCGGATGAGTTG
GCTTTTAACTGTTCCTTTGAAACAATGACATGGGCGCaaagaaatatgat
atttctgAGATTTGTGAATATTACCAAAGTCAAATATTTCctgtaaattt
ttgaaatcaattttttcatttatttcatcCAGTGTCAGACTTCCAAGGTA
GAGAGCTAACTCCAGAGACTGATCTGATTCATTCTTTTCGTTTAATAGAA
ATACTAACGCTCTTCAGGCTGGTTCTATATTTCAATGATTTCCAGAAGAT
AGAATCTACATTATCAATGGCGCTGTTTTTGTAGAGACCATTGAAATTAT
AACTAGCGCATGAGTTTAACCAGCCACCGCCTTTTATGTAATTTGCACAA
TTGTAATGAATGCTCTGGTCGTTTGGGTTGTCTTTTGTGGAGAAGTATTG
GCCATCATGGTCCTCCCAATCAATCTTGTTTGAAGCATCACCCTCAAGAA
AGGTGCCTGCGTGCAATTTATACaaattttcttctccttctacaaagaaa
ttttggaaaacCACATACGCTTGATCACCATCAAAAGCTGTGGCTTCCAT
TCGAACCATCATGTTTGAATATTTGGTGGTGATCCGATGAATGTGTTCCA
ATCCCAACCAGTATTCCCCAGCTGCCTCTCCAAAGCCTACTTTGTAATCC
GCCCACTCTTTATTAAAGTTGACGGAACCATCGAATCTTCTTTGAATGGT
GGTCCACCCTCCACCATGTCGGGTCATGTCACAAAGCACTTCAATTTCTT
CTCCATCGTATGGCCTGATACTATAGTCTCCATCTGGTTTCTCTTTCCCA
AGATCTTGACATAATTCTGGCAGGACGTGATTATAAACTAAGCTGCCAGC
GCTTGACACTACTGCAACATCCCCGAAGTTTCTTTTAAAGAATCTGCAAT
GAAATCTTTCGTCGGATAGTTCTGTCACCTCCACCAGATAACCAGAGTCA
AATCTTTTCATCAGACATTGTAATTCGACATCAACCGTTTCGTTGAGGAA
AGACTCTGTTCCATTTTGTATCACAATTTTACTGTTCTCGGCAACTTTTT
GGAAAGTGGAGAAATGCCCGTCAGAAATTCCATTGCAAGGTGAAAACACC
TGTATTGttgtaaaaataaagaaaaactttattttctccattttgtttGT
CTACTTTCTTACTTA Run BLAST on NCBI protein sequence of TCONS_00018874-protein >TCONS_00018874-protein ID=TCONS_00018874-protein|Name=TCONS_00018874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MEKIKFFFIFTTIQVFSPCNGISDGHFSTFQKVAENSKIVIQNGTESFLN
ETVDVELQCLMKRFDSGYLVEVTELSDERFHCRFFKRNFGDVAVVSSAGS
LVYNHVLPELCQDLGKEKPDGDYSIRPYDGEEIEVLCDMTRHGGGWTTIQ
RRFDGSVNFNKEWADYKVGFGEAAGEYWLGLEHIHRITTKYSNMMVRMEA
TAFDGDQAYVVFQNFFVEGEENLYKLHAGTFLEGDASNKIDWEDHDGQYF
STKDNPNDQSIHYNCANYIKGGGWLNSCASYNFNGLYKNSAIDNVDSIFW
KSLKYRTSLKSVSISIKRKE Run BLAST on NCBI transcript from alignment at sc0000309:249533..251047 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018874 ID=TCONS_00018874|Name=TCONS_00018874|organism=Clytia hemisphaerica|type=transcript|length=1515bp|location=Sequence derived from alignment at sc0000309:249533..251047 (Clytia hemisphaerica)
TAAGTAAGAAAGTAGACaaacaaaatggagaaaataaagtttttctttat
ttttacaaCAATACAGGTGTTTTCACCTTGCAATGGAATTTCTGACGGGC
ATTTCTCCACTTTCCAAAAAGTTGCCGAGAACAGTAAAATTGTGATACAA
AATGGAACAGAGTCTTTCCTCAACGAAACGGTTGATGTCGAATTACAATG
TCTGATGAAAAGATTTGACTCTGGTTATCTGGTGGAGGTGACAGAACTAT
CCGACGAAAGATTTCATTGCAGATTCTTTAAAAGAAACTTCGGGGATGTT
GCAGTAGTGTCAAGCGCTGGCAGCTTAGTTTATAATCACGTCCTGCCAGA
ATTATGTCAAGATCTTGGGAAAGAGAAACCAGATGGAGACTATAGTATCA
GGCCATACGATGGAGAAGAAATTGAAGTGCTTTGTGACATGACCCGACAT
GGTGGAGGGTGGACCACCATTCAAAGAAGATTCGATGGTTCCGTCAACTT
TAATAAAGAGTGGGCGGATTACAAAGTAGGCTTTGGAGAGGCAGCTGGGG
AATACTGGTTGGGATTGGAACACATTCATCGGATCACCACCAAATATTCA
AACATGATGGTTCGAATGGAAGCCACAGCTTTTGATGGTGATCAAGCGTA
TGTGgttttccaaaatttctttgtagaaggagaagaaaatttGTATAAAT
TGCACGCAGGCACCTTTCTTGAGGGTGATGCTTCAAACAAGATTGATTGG
GAGGACCATGATGGCCAATACTTCTCCACAAAAGACAACCCAAACGACCA
GAGCATTCATTACAATTGTGCAAATTACATAAAAGGCGGTGGCTGGTTAA
ACTCATGCGCTAGTTATAATTTCAATGGTCTCTACAAAAACAGCGCCATT
GATAATGTAGATTCTATCTTCTGGAAATCATTGAAATATAGAACCAGCCT
GAAGAGCGTTAGTATTTCTATTAAACGAAAAGAATGAATCAGATCAGTCT
CTGGAGTTAGCTCTCTACCTTGGAAGTCTGACACTGgatgaaataaatga
aaaaattgatttcaaaaatttacagGAAATATTTGACTTTGGTAATATTC
ACAAATCTcagaaatatcatatttctttGCGCCCATGTCATTGTTTCAAA
GGAACAGTTAAAAGCCAACTCATCCGACGCCTTTGTTCTCGGAATTCAGA
CTTTCTTCTGATGCTGTTGCTCTCTTGAGAGAACGTTCGATCAACTCTGG
ATATTCTGTTGAAATGGTGAATAATATCCTCCAACAAGCGAGCATATTGG
AAAGTAGTAAATCTTTTCTTGCAACATTGGGAATGGAAAGGAGGACTTCT
CTATCCAGTACTTAGAGACTATTATCATTCTAGGGAGAAATATACTCTCT
CTGAGAGAGGTTATTTGTCCCCCTATTTACTATTCAACAAATGTTTGCGG
GGgcttttaaatattaaaaaaaaaattttaaagctaGATATTTGACTGAT
TTCTGTATATATATG Coding sequence (CDS) from alignment at sc0000309:249533..251047 >TCONS_00018874 ID=TCONS_00018874|Name=TCONS_00018874|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000309:249533..251047 (Clytia hemisphaerica)
atggagaaaataaagtttttctttatttttacaaCAATACAGGTGTTTTC
ACCTTGCAATGGAATTTCTGACGGGCATTTCTCCACTTTCCAAAAAGTTG
CCGAGAACAGTAAAATTGTGATACAAAATGGAACAGAGTCTTTCCTCAAC
GAAACGGTTGATGTCGAATTACAATGTCTGATGAAAAGATTTGACTCTGG
TTATCTGGTGGAGGTGACAGAACTATCCGACGAAAGATTTCATTGCAGAT
TCTTTAAAAGAAACTTCGGGGATGTTGCAGTAGTGTCAAGCGCTGGCAGC
TTAGTTTATAATCACGTCCTGCCAGAATTATGTCAAGATCTTGGGAAAGA
GAAACCAGATGGAGACTATAGTATCAGGCCATACGATGGAGAAGAAATTG
AAGTGCTTTGTGACATGACCCGACATGGTGGAGGGTGGACCACCATTCAA
AGAAGATTCGATGGTTCCGTCAACTTTAATAAAGAGTGGGCGGATTACAA
AGTAGGCTTTGGAGAGGCAGCTGGGGAATACTGGTTGGGATTGGAACACA
TTCATCGGATCACCACCAAATATTCAAACATGATGGTTCGAATGGAAGCC
ACAGCTTTTGATGGTGATCAAGCGTATGTGgttttccaaaatttctttgt
agaaggagaagaaaatttGTATAAATTGCACGCAGGCACCTTTCTTGAGG
GTGATGCTTCAAACAAGATTGATTGGGAGGACCATGATGGCCAATACTTC
TCCACAAAAGACAACCCAAACGACCAGAGCATTCATTACAATTGTGCAAA
TTACATAAAAGGCGGTGGCTGGTTAAACTCATGCGCTAGTTATAATTTCA
ATGGTCTCTACAAAAACAGCGCCATTGATAATGTAGATTCTATCTTCTGG
AAATCATTGAAATATAGAACCAGCCTGAAGAGCGTTAGTATTTCTATTAA
ACGAAAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018874-exon-sc0000309-1491911889:249533..251047 | TCONS_00018874-exon-sc0000309-1491911889:249533..251047 | Clytia hemisphaerica | exon |
| TCONS_00018874-exon-sc0000309-1510915933:249533..251047 | TCONS_00018874-exon-sc0000309-1510915933:249533..251047 | Clytia hemisphaerica | exon |
| TCONS_00018874-exon-sc0000309-1575043694:249533..251047 | TCONS_00018874-exon-sc0000309-1575043694:249533..251047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:249533..251047 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018874 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.042e-34 Identity = 81/214 (37.85%), Postives = 117/214 (54.67%), Query Frame = -1
Query: 541 PELCQDLGKEK--PDGDYSIRPYDGEEIEVLCDMTRHGGGWTTIQRRFDGSVNFNKEWADYKVGFGEAAGEYWLGLEHIHRITTKYSNMMVRMEATAFDGDQAYVVFQNFFVEGEENLYKLHAGTFLEGDASNKIDWEDHDGQYFSTKDNPNDQSIHYNCANYIKGGGWLNSCASYNFNGLYKNSAIDN-VDSIFWKSLK-YRTSLKSVSISIK 1170
P C+DL G ++I D + VLCDM GGGWT QRR DGSV+F ++WA YK GFG GE+WLG ++IH +T + S+ + R++ F+G+ + +++F V E YKL G F+ G A N + H+ +FSTKD ND S NCA +G W C + N NGLY ++ + I W + K Y+ S K + ++
Sbjct: 115 PRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSEL-RVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSL--TGHNNNFFSTKDQDNDVS-SSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVR 324
The following BLAST results are available for this feature:
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