|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018873 ID=TCONS_00018873|Name=TCONS_00018873|organism=Clytia hemisphaerica|type=transcript|length=1099bp
TTAATACGGCCtcattatttcttttctttttcatactaaCTTTGAAATAA
ATATCTATTTACAGTAAAGAGTATCTTGATAGCCAGAGTTGCTATCACCA
AGATTGATTAATTATCTTTCACAATCGAAATCGAAACTTTTGGCCTTGCG
AAATCTACTGTTGAAAACAGTCAGTTCTGTTGGTTTTCTATTGTAAGGAA
TTGCTGCTTGAAATCCATTCCGAACCTCTTTACAACTTACTCCACCATCA
TTAATTAAGTAAGCGGCAACATCAAAGTAACCATTGGTTACCGCTAATAA
TAATGGCGTCAAGCTATCTTCGTTCTGTATAGAAGCATCTGCTCCGAATT
CCAGTAAAAGTTTGATAATGTTAAGGTTGCCTAGACGACATGCATGATGT
AATGCGTTCCAACCAGGGGGTAACAAAGCGTTAACGTCCACGTTTTCTAG
CAGTAAAATTTGTCTGGTTAACTCAACATTTCCATTCAAGATGGCGTTAT
GTAAAGATTCTGTACCGTTATAAATAGAGGATTGCTTTTTGGAGAAACTT
TTTCGTTTTGAAAAAGCGTGACGTTTCTTTACGTCTGTGTTGGCttcatt
ttgttgaattttaagCAACTCGTCAAGAATCGTTGAGTGTTCTGCAGTGC
TGAAATCTAAAGATAAAGCTTGACGTCGAAGTTTCGTTGATGGTGAATCG
ACTGCCACGTTTGTTATTGAATCTGACGAAAGTTCGATCTTGGATGATCT
TTTGATACCAAATTTCAATGAAGCAAACAATGCAGAAAAACTGCTGGTTG
AATTCGTTGCTAAAgtcattttgttctttttttgccaaaaatattgctgc
tGATAATGTTTTGTATATGATTTACTTGGtgatataaaaaaattctcctc
GTGTTTACCAACAAACTACTTTTGATCATCAAACAACTCTATACCGCTTT
CAAAATAACAACACAGAGCCTTATACCACTTATATCTTTCATCAAACCAG
TGTCTTTCGGTTGCTCTTATTAAAGTATTATGAGCAACCATTATTTTCAT
CTTTGTAAAAACAAGCCGAAAATTCTGAATAATTAACTccaaattgaaa Run BLAST on NCBI protein sequence of TCONS_00018873-protein >TCONS_00018873-protein ID=TCONS_00018873-protein|Name=TCONS_00018873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MTLATNSTSSFSALFASLKFGIKRSSKIELSSDSITNVAVDSPSTKLRRQ
ALSLDFSTAEHSTILDELLKIQQNEANTDVKKRHAFSKRKSFSKKQSSIY
NGTESLHNAILNGNVELTRQILLLENVDVNALLPPGWNALHHACRLGNLN
IIKLLLEFGADASIQNEDSLTPLLLAVTNGYFDVAAYLINDGGVSCKEVR
NGFQAAIPYNRKPTELTVFNSRFRKAKSFDFDCER Run BLAST on NCBI transcript from alignment at sc0000309:247858..248956 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018873 ID=TCONS_00018873|Name=TCONS_00018873|organism=Clytia hemisphaerica|type=transcript|length=1099bp|location=Sequence derived from alignment at sc0000309:247858..248956 (Clytia hemisphaerica)
tttcaatttggAGTTAATTATTCAGAATTTTCGGCTTGTTTTTACAAAGA
TGAAAATAATGGTTGCTCATAATACTTTAATAAGAGCAACCGAAAGACAC
TGGTTTGATGAAAGATATAAGTGGTATAAGGCTCTGTGTTGTTATTTTGA
AAGCGGTATAGAGTTGTTTGATGATCAAAAGTAGTTTGTTGGTAAACACg
aggagaatttttttatatcaCCAAGTAAATCATATACAAAACATTATCag
cagcaatatttttggcaaaaaaagaacaaaatgacTTTAGCAACGAATTC
AACCAGCAGTTTTTCTGCATTGTTTGCTTCATTGAAATTTGGTATCAAAA
GATCATCCAAGATCGAACTTTCGTCAGATTCAATAACAAACGTGGCAGTC
GATTCACCATCAACGAAACTTCGACGTCAAGCTTTATCTTTAGATTTCAG
CACTGCAGAACACTCAACGATTCTTGACGAGTTGcttaaaattcaacaaa
atgaaGCCAACACAGACGTAAAGAAACGTCACGCTTTTTCAAAACGAAAA
AGTTTCTCCAAAAAGCAATCCTCTATTTATAACGGTACAGAATCTTTACA
TAACGCCATCTTGAATGGAAATGTTGAGTTAACCAGACAAATTTTACTGC
TAGAAAACGTGGACGTTAACGCTTTGTTACCCCCTGGTTGGAACGCATTA
CATCATGCATGTCGTCTAGGCAACCTTAACATTATCAAACTTTTACTGGA
ATTCGGAGCAGATGCTTCTATACAGAACGAAGATAGCTTGACGCCATTAT
TATTAGCGGTAACCAATGGTTACTTTGATGTTGCCGCTTACTTAATTAAT
GATGGTGGAGTAAGTTGTAAAGAGGTTCGGAATGGATTTCAAGCAGCAAT
TCCTTACAATAGAAAACCAACAGAACTGACTGTTTTCAACAGTAGATTTC
GCAAGGCCAAAAGTTTCGATTTCGATTGTGAAAGATAATTAATCAATCTT
GGTGATAGCAACTCTGGCTATCAAGATACTCTTTACTGTAAATAGATATT
TATTTCAAAGttagtatgaaaaagaaaagaaataatgaGGCCGTATTAA Coding sequence (CDS) from alignment at sc0000309:247858..248956 >TCONS_00018873 ID=TCONS_00018873|Name=TCONS_00018873|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000309:247858..248956 (Clytia hemisphaerica)
atgacTTTAGCAACGAATTCAACCAGCAGTTTTTCTGCATTGTTTGCTTC
ATTGAAATTTGGTATCAAAAGATCATCCAAGATCGAACTTTCGTCAGATT
CAATAACAAACGTGGCAGTCGATTCACCATCAACGAAACTTCGACGTCAA
GCTTTATCTTTAGATTTCAGCACTGCAGAACACTCAACGATTCTTGACGA
GTTGcttaaaattcaacaaaatgaaGCCAACACAGACGTAAAGAAACGTC
ACGCTTTTTCAAAACGAAAAAGTTTCTCCAAAAAGCAATCCTCTATTTAT
AACGGTACAGAATCTTTACATAACGCCATCTTGAATGGAAATGTTGAGTT
AACCAGACAAATTTTACTGCTAGAAAACGTGGACGTTAACGCTTTGTTAC
CCCCTGGTTGGAACGCATTACATCATGCATGTCGTCTAGGCAACCTTAAC
ATTATCAAACTTTTACTGGAATTCGGAGCAGATGCTTCTATACAGAACGA
AGATAGCTTGACGCCATTATTATTAGCGGTAACCAATGGTTACTTTGATG
TTGCCGCTTACTTAATTAATGATGGTGGAGTAAGTTGTAAAGAGGTTCGG
AATGGATTTCAAGCAGCAATTCCTTACAATAGAAAACCAACAGAACTGAC
TGTTTTCAACAGTAGATTTCGCAAGGCCAAAAGTTTCGATTTCGATTGTG
AAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018873-exon-sc0000309-1491911889:247858..248956 | TCONS_00018873-exon-sc0000309-1491911889:247858..248956 | Clytia hemisphaerica | exon |
| TCONS_00018873-exon-sc0000309-1510915933:247858..248956 | TCONS_00018873-exon-sc0000309-1510915933:247858..248956 | Clytia hemisphaerica | exon |
| TCONS_00018873-exon-sc0000309-1575043694:247858..248956 | TCONS_00018873-exon-sc0000309-1575043694:247858..248956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:247858..248956 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
