TCONS_00018848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018848
Unique NameTCONS_00018848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018848 ID=TCONS_00018848|Name=TCONS_00018848|organism=Clytia hemisphaerica|type=transcript|length=1132bp
ttcagactacgaCATTCGCCACATGCCGTGGCCAATTACAAGGACTGATA
TTTCTCAAAAAGTATAGTTGATTATCCACTGCCATGATAAAATGTGAACA
caccgttcttataaaaaagctctCCCGTTTTGGGTCCTTTAAGGGTACAA
TAACaatgaaaatgtcaaaagaaTCTCTCTAAGGTTAGATAAATATTCGA
AAATTGTCTCTGTAAGGGTAACTTTTTCGCAAAAAGATAAGTCTCTCTCA
GGTCAGGCCAGGATCCTTTTTTGGAGGTCCAACATACCCTCCAACAAAGT
AAAACCAAGTacATTGCTCTAAAATTTTTGTAATGAACTTCTTGCAAAGC
TGATTTATTTACTATCTCAAAACCGGGACTAATTTTTTCTGCATAAAATA
GAGTTAATTTTCTCAAACACCAACTTCATGAACATGGGGTCACGATAATA
GTGTCCTTGTGCCACAATATTTCCATTTTGAAGTACAGGGGATTCTTCAA
TATTACTGCTTTTGATGATTATATTTATGGTATTTTCAACGTtgaatttc
attggttggaaaTCGGTATGATctactttttcataaaaaaatggtaaatG
GATGGCAATTATTTCTCCGttgtcttcttcttctttcataTACTTCATTA
ATTTATCTTTTGTTATCAGACTTCCACCCGTGGTACTGATTACATTTTTT
GCAGTAAGCTCTCTGATTCTGTGAAACGTTGCATTTGGGAAAACATCCTG
AACAATATTGTTCCAAAACAAGAAGCTTGGGTAATAGTAACCCACAGACT
TTACCCAGAAGTAGAAGTGATAATTTGTGGACGATGGGCATTGAAATTTG
ATATGACGTGTATATCTTTCATACCAGTTGTACTGAGGATTCAACATAAG
ATCCATCAGAATTTGATGAAAGTGTGGATCGATATCAAtcgacgatttat
taaaattttcaaattccatAATAACATTTTCTTTTGGCATCCACGGaaga
aataaatcataaaaaataaaaccaaacaaCAATACCACGAAATCACTTTC
CTTTCGTTCCTGCATATTTTGAGCTTTCTTAATTACTGTAGAACCATGTT
CATCTAAACTATCACCTCTGTACCCATcaacc
Run BLAST on NCBI

transcript from alignment at sc0000309:174626..176408-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018848 ID=TCONS_00018848|Name=TCONS_00018848|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at sc0000309:174626..176408- (Clytia hemisphaerica)
TTCAGACTACGACATTCGCCACATGCCGTGGCCAATTACAAGGACTGATA
TTTCTCAAAAAGTATAGTTGATTATCCACTGCCATGATAAAATGTGAACA
CACCGTTCTTATAAAAAAGCTCTCCCGTTTTGGGTCCTTTAAGGGTACAA
TAACAATGAAAATGTCAAAAGAATCTCTCTAAGGTTAGATAAATATTCGA
AAATTGTCTCTGTAAGGGTAACTTTTTCGCAAAAAGATAAGTCTCTCTCA
GGTCAGGCCAGGATCCTTTTTTGGAGGTCCAACATACCCTCCAACAAAGT
AAAACCAAGTACATTACCCTGAGTATCAGAGGTTAAGTTTTCAAAGAAAA
TAGTAACCTCTGAAGACAAATAATAGAAATTTTATCGCGCATGTGTCAAT
CTNCGTAGAAAAAATCAAAGATGAAGAGCAAATATTACCATATTAATGTC
TAGCAGACTGTATCAGTATGCAGTTTACTATTTACGAATTCCCCANNNNN
NNNNNTACATGATCCCCAAATGTATAACAGTAATTACTAAACTTTTAATT
ATGGAAATGTCACTTTAATTGAATCGAAATAATAGACAGACTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGTGT
TTTCAACGACGGGAATAAAAATATCGACTATGACGCTCATCCAAGATCTT
GGATGGTCGTCATGGTTACTTTTTTCTTCGCTGATTGCGCGATGAATAGA
ATCTCGATTCGTCGGCACAGCGTAAATATTGATTTTGAGCTGTGCTTTTC
ACGGTACAAGTACATTGCTCTAAAATTTTTGTAATGAACTTCTTGCAAAG
CTGATTTATTTACTATCTCAAAACCGGGACTAATTTTTTCTGCATAAAAT
AGAGTTAATTTTCTCAAACACCAACTTCATGAACATGGGGTCACGATAAT
AGTGTCCTTGTGCCACAATATTTCCATTTTGAAGTACAGGGGATTCTTCA
ATATTACTGCTTTTGATGATTATATTTATGGTATTTTCAACGTTGAATTT
CATTGGTTGGAAATCGGTATGATCTACTTTTTCATAAAAAAATGGTAAAT
GGATGGCAATTATTTCTCCGTTGTCTTCTTCTTCTTTCATATACTTCATT
AATTTATCTTTTGTTATCAGACTTCCACCCGTGGTACTGATTACATTTTT
TGCAGTAAGCTCTCTGATTCTGTGAAACGTTGCATTTGGGAAAACATCCT
GAACAATATTGTTCCAAAACAAGAAGCTTGGGTAATAGTAACCCACAGAC
TTTACCCAGAAGTAGAAGTGATAATTTGTGGACGATGGGCATTGAAATTT
GATATGACGTGTATATCTTTCATACCAGTTGTACTGAGGATTCAACATAA
GATCCATCAGAATTTGATGAAAGTGTGGATCGATATCAATCGACGATTTA
TTAAAATTTTCAAATTCCATAATAACATTTTCTTTTGGCATCCACGGAAG
AAATAAATCATAAAAAATAAAACCAAACAACAATACCACGAAATCACTTT
CCTTTCGTTCCTGCATATTTTGAGCTTTCTTAATTACTGTAGAACCATGT
TCATCTAAACTATCACCTCTGTACCCATCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010552XLOC_010552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018848-exon-sc0000309-1575043694:176097..176408TCONS_00018848-exon-sc0000309-1575043694:176097..176408Clytia hemisphaericaexon
TCONS_00018848-exon-sc0000309-1575043694:174626..175445TCONS_00018848-exon-sc0000309-1575043694:174626..175445Clytia hemisphaericaexon
TCONS_00018848-exon-sc0000309-1510915933:176097..176408TCONS_00018848-exon-sc0000309-1510915933:176097..176408Clytia hemisphaericaexon
TCONS_00018848-exon-sc0000309-1510915933:174626..175445TCONS_00018848-exon-sc0000309-1510915933:174626..175445Clytia hemisphaericaexon
TCONS_00018848-exon-sc0000309-1491911889:176097..176408TCONS_00018848-exon-sc0000309-1491911889:176097..176408Clytia hemisphaericaexon
TCONS_00018848-exon-sc0000309-1491911889:174626..175445TCONS_00018848-exon-sc0000309-1491911889:174626..175445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:174626..176408 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0384374	0	0	0	0	0	0.0988348	0.323848	0.64781	0.240725	0.467307	0.332788	1.20149	1.24775	2.008	1.26482	0.663661	0.591505	0.939776	1.53925	0.222981	0.271906	0.220358	0.240405	0.165074	0.810287	0.685169	0.224994	0.0426625	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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