TCONS_00018835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018835
Unique NameTCONS_00018835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018835 ID=TCONS_00018835|Name=TCONS_00018835|organism=Clytia hemisphaerica|type=transcript|length=1686bp
CGACAgcttaatcaaaacaaaattttgtcctGTCGGGTTATGGttgaaaa
aatgacaaaagataAGAACCAACTGACTGACTTGTTGGATGTTCACACAG
GGACAGcaacaatttaaaaaatgaaaatctttgtaGCGGTCTGTCTTGCA
TTCATATTGGTGGAAGCCAAAAAGAAGGAATGCAATTTGAAGTGTTCAAA
AGATGACAAACAGAAAGTGTGTGGTAAAGATGGTGTTACCTACAAATCAT
TTTGTCATTTGCAACTTCAATCTTGCCACCAAGGAAAGGACATTGGCTTC
GCATGTGATGGAACTTGCCCATGTGATCCGCCAGAGGTCTTCCAAATGGA
TCAAGAAACAGTGAAGAAGATTCAAGAAGCCAGATCACTCTATCAACTTC
AAAAACACGAGAAAGAAGAACTGAACAGTGCTGATACTTTTTTGGCCAGG
GAACTTCTTGGTGAAGACGATCTGAAGAGACATATCGCTTTAAAAGTCAT
GGAACAGGATAAGAAGCAAGAGTGTCAATTAAGTGAAATGGCAGAATTAC
CAACTCGTCTTATTGATTGGTTCCATGTACTTCGCATCAATGAAAAGGTG
GAGGATATGAGAATCCAACGTATTGAAGGTGAACCCAtcatgaaagaaga
aaatttctctgatgaaaaaatgaaatcaatgtATACCGAATTAGCTTGTT
CTGATCACAAAGACCAAAAAGTTGAGAAAGCAGTTTGTTTGAAGCCTGTA
CAATGGATGTTCCATCACCTGGATGCCAATGGTGATAACCATTTGAGCGC
AAGCGAGCTCTCAGACATTGAGGATATTCAGAACGAGAAATGCATCAAAC
CTTTCTTGCAATCTTGTGATCATGATAAAGATGGAAAGGTTGAATTAGCT
GAATTCTGTCGTTGTTTGTGTGTCTCTCCACCTTGCACAAATGTCATCAA
GAACGTACCAATCTTGATGGTTCGTGGACAACCAGCACCTATGCCTGGTT
TCTTTGTACCAAGATGTGATGATGATGGTTTTTTCATGCCTGAACAATGC
AACCCAATGAAAGAATGTTGGTGTGTGGACAGAAACGGTGGCGAACTTCT
CGGTACAAGAACCAAGAAAGGCTCTGCTACCTGTGATTCTTACAACACAA
AGAACCCTTCATCGCGACTTGTCCCTTTGAATATCAACAATGAGCAAGGA
CACTAATAAATTACAATAGTGTTTGAATCATTTTCGAAAATGACTATTTA
TCGGAAATTTGTTAACTTTTTGTATATGTAAAATATATCTATAGTTTTTT
ATACTCGAAACCTTCTCATTGTACATTTACGTTGGTGTTGATATTTTTGA
CATCGTACGAGGCTTCGGAAAAAGCTTCTATGTTTTGATCTACTCAACTG
AAAAGGGGTGTCTTACATAGCTTTTCATCTAAAGGTGTTTTCGAAAAGTT
CTCTATTGGATAAGCGCCAGCTTTTTCTCCTTCTGGtgtcagaaaaatat
ttttatatttatgcGTTTTACATTTAGTTTTTTTACTACTACTGAACTAC
TATTATCACCCTTATTTTTTGTACGTTAAAAGAAAAACAGATTGAGAATT
TTAGTagatttttttagttcaatttttttctactctatattttttttctc
tatgaAATATTAGTCTACAGGGGAGTCTCTTTACAA
Run BLAST on NCBI

protein sequence of TCONS_00018835-protein

>TCONS_00018835-protein ID=TCONS_00018835-protein|Name=TCONS_00018835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MKIFVAVCLAFILVEAKKKECNLKCSKDDKQKVCGKDGVTYKSFCHLQLQ
SCHQGKDIGFACDGTCPCDPPEVFQMDQETVKKIQEARSLYQLQKHEKEE
LNSADTFLARELLGEDDLKRHIALKVMEQDKKQECQLSEMAELPTRLIDW
FHVLRINEKVEDMRIQRIEGEPIMKEENFSDEKMKSMYTELACSDHKDQK
VEKAVCLKPVQWMFHHLDANGDNHLSASELSDIEDIQNEKCIKPFLQSCD
HDKDGKVELAEFCRCLCVSPPCTNVIKNVPILMVRGQPAPMPGFFVPRCD
DDGFFMPEQCNPMKECWCVDRNGGELLGTRTKKGSATCDSYNTKNPSSRL
VPLNINNEQGH
Run BLAST on NCBI

transcript from alignment at sc0000309:98160..103158-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018835 ID=TCONS_00018835|Name=TCONS_00018835|organism=Clytia hemisphaerica|type=transcript|length=4999bp|location=Sequence derived from alignment at sc0000309:98160..103158- (Clytia hemisphaerica)
CGACAGCTTAATCAAAACAAAATTTTGTCCTGTCGGGTTATGGTTGAAAA
AATGACAAAAGATAAGAACCAACTGACTGACTTGTTGGATGTTCACACAG
GGACAGGTAAACATTGTTTCTCAAAACAAAATTCTCATTCACTATAGACA
GATTTTTTACTTTTTTGAGATCTTTATTTTCTTGATCTATTGGGAGAAGA
ATTTTCCATCCAGTGTGCTGTCCATAGCTGTCCATCTTGTATTGAATCAA
CCCTTTAACATTAACTTGTAATAAGAATTTTATTTGTGGCTTTAAACATG
ATACCGTCAACTGCTCTAACTTGGAACACGACCCTGCCTATGCCCCGGAC
AGTCCGGGGCAAATGTCTGGGGTCTGAAAAAAATAACTTTTTCCCCGGAC
TGTCCGGGGCATAGGCAGGGTCGTCTTGGAACGATTGGTCGAAACATGGG
ACTGTTGCATATCTGGTCTGTATTTTCACTTACTGTAAAATCGAAAGAGA
AATCGTGTATTTTTTAAAACGCCGTTCCTTAACTCAAATCAAATGTCTTT
GGAGTTTCGGCGAAATGGTGGCCGAATTGCCGTCCCATGTTTTGTCAGGT
AGTCCCAAGTTGGAGCAGTTGACGGTACTTCAATTATTCAATCATAAAGC
ACAAACCTGGGTGAACCTGGGGGGGAGACTTAGGCGAAATTGGGTATGGG
GACGTGCTGTTGGTAAGGGTCCCTTTTTTAGGCTCTGAAGATATCTGACA
GGATCCCAAATTTACTGACTTTCAAAATGTGTATCTGACAGGGTCGGCTT
CTTTTGGTTATTTCAAAGACAATTTTCAGGGTGAAAGATTTTTTTTTCGA
TTCTGTTGTCTACGTAGTTTTTGTCATTTATACCACTTTTCAGGGTGGAT
TTTACGACCTCCTGCTGACAGGGTCCCAAATTTACCAAACATTCATATGA
CAGGGTCCACTATCTCTCACAACCCATGCAGCAGCAAGTCCCTGTTGCCT
GTCAAGGTCACCAAACAGTAACGAAAAATACATGTATAACCAGAATATTT
TCAAACGTTTTGATCAAATGTTTTCTCTATAGCACTACTGTCAATTGGGT
TTTCCTCTAATAAATATAAATTTTCAGCTTTAATAGACCTTTTGCTATTA
GATAGTTAAATTTCTGCTGGAGTTATTTGTTATCCAATAGACCACCACGT
GAAACATCTACCACAAGCAACCTCGTCCTCATGTATCCCAGGCTTTAATT
ATGTTACTTATTGACGTCAGAGAATACCCTGGTGTTGGCTAAACAATACA
ATACGTCATGGAAAATCTGACGATTGGGAGAGGGATGTTGACATCAGACC
AACTTACAGTATAGTTGTTTTTAGGTGTTATATTGAATAACAAATTACTA
CAGCATAAATTCTTATCAATTTTAGTGAATATTGAAAATAGTGTACTAAT
CATGAGTCATGGTTTAGCCTCTAACTTTGTTACTGATCTTTTATAGAAAG
AGATTTATATACCGGAATATTTATGAACAAAAACCTACATCAACTGCCAT
TTCTCTTAAAAATCATAAATTGTAAAAGACCTTGGATAAAACTAACTTCA
AAGAAAGAGAGATATACTTTTTTGTGTATATTAGGCAGTGTTTAACTTTG
AAGTGGACTAACTTCCTTTTTTTTCAGCAACAATTTAAAAAATGAAAATC
TTTGTAGCGGTCTGTCTTGCATTCATATTGGTGGAAGCCAAAAAGAAGGT
ACGAAGTTTCTTAATTTAATACTCTACTTCATTTTCAATATAACACTTTT
TTTTGAGGCTCAGCTGATTTTATTTTTTCAGCACTTTGAGCTTCAGATTG
TTCTTTGAAATCATATTTTTGTTTTTAGGTATTTTAGGCTCTATTCCTGG
GCAGTGTCTTTTTAGACTATAAAATTCCAATTTTAATGGAATATTTCTGC
TGGTTTTGGACTAGAAATGGGAAGGATTGTGACTAAGAACTGGAAAATAT
AGCTTTGTGTATATGAGGTAGGTTTATTTGATTAGCAGAACTAGAATAGC
AAGTTGAAGATATTTGAGATATTTCCATAGGTAAACATTTGATTTGAAAA
AAAAAAACACTTCTTGTGACTTCAGGAATGCAATTTGAAGTGTTCAAAAG
ATGACAAACAGAAAGTGTGTGGTAAAGATGGTGTTACCTACAAATCATTT
TGTCATTTGCAACTTCAATCTTGCCACCAAGGAAAGGACATTGGCTTCGC
ATGTGATGGAACTTGCCCATGTGGTAAGTAATATTCACCCTAAACTTATA
TTACTGGAAAGTTTTCTCTAAAACTGGAATCAATATATGCTGAACATATG
AGTGAACATTGAGTGAGTATGTCTATTTCTTATCTTTTCAGATCCGCCAG
AGGTCTTCCAAATGGATCAAGAAACAGTGAAGAAGATTCAAGAAGCCAGA
TCACTCTATCAACTTCAAAAACACGAGAAAGAAGAACTGAACAGTGCTGA
TACTTTTGTAAGTACATTTTTAATTATGTTAAAAGTCAAATATTATCAAT
CTTTCTTCATTATAAGGTATTATAATGTATAAACCTATCTTTTAATATCT
TTTTTAATAGTTGGCCAGGGAACTTCTTGGTGAAGACGATCTGAAGAGAC
ATATCGCTTTAAAAGTCATGGAACAGGATAAGAAGCAAGGTAATGTATTT
AATCAGCTTTCTATGCACGCTCGATCTTCAAGCAATGCAATTTATCGTAG
AGATTGAAATTTTATCTACAATACAATGCGCTAAATCTTCTTGAGCACTT
TGCAATTCTAACATTTATTTATTTCCATTCGATCAATCAATCAATCGTAA
TATTCAGAATATCATAGTATCCATAGATTTGCTGCTCTTATTTCATTAGT
ATTTATCCATTTTCAGAGTGTCAATTAAGTGAAATGGCAGAATTACCAAC
TCGTCTTATTGATTGGTTCCATGTACTTCGCATCAATGAAAAGGTGGAGG
ATATGAGAATCCAACGTATTGAAGGTGAACCCATCATGAAAGAAGAAAAT
TTCTCTGATGAAAAAATGAAATCAATGTGTAAGTAACCAACTGTTTCTAT
GAATATATAAGGCAAGACCAGTTGAGTTTTTTTTGACAAAAATCTCACGA
CATTGGATTGTCCAGTAAAATTTGTTTAACATTGAGTTCTAAAAGGGCCT
ATCAGTATTTTCTTTTAACTTTTATGACGGAGCTCAATATTTGTAGTGTC
TCAATTTTGGGTATGATGTAGAGCAAAAATATTCTTACAATTTTCAAAAT
AGCCAGATTTGATTTGAATGTTATGTTGCAAATTTCATATGATTGTTATT
GTTAATGCATATCAGTTAAAAAGAGTCACTAATTTCCCATTGCCAAAGAA
ATCACACTATATTTAAATNGTTAATGCCTATCAGTTAAAAAGAGTCACTA
ATTTCCCATTGCCAAAAAAATCACACTATATTATAAGTGTTCATATCTTT
TAGATACCGAATTAGCTTGTTCTGATCACAAAGACCAAAAAGTTGAGAAA
GCAGTTTGTTTGAAGCCTGTACAATGGATGTTCCATCACCTGGATGCCAA
TGGTGATAACCATTTGAGCGCAAGCGAGCTCTCAGACATTGAGGATATTC
AGAACGAGAAATGCATCAAACCTTTCTTGCAATCTTGTGATCATGATAAA
GATGGAAAGGTTGAATTAGCTGAATTCTGTCGTTGTTTGTGTGTCTGTAA
GTCCACTGGAATTTCTTGATTACCTTTACATGCATGCCTTAATGTGTGTG
GATTATGATCTTTTAATCTGGCGATTATGCTACTTTTTTATTAGATAGAA
AATACTTTGGATGCGTTTGATTTCTGAATGAGTGTGTTTTTGCTCATTTT
TTGTTTTCCTGTTTTTTAGCTCCACCTTGCACAAATGTCATCAAGAACGT
ACCAATCTTGATGGTTCGTGGACAACCAGCACCTATGCCTGGTTTCTTTG
TACCAAGATGTGATGATGATGGTTTTTTCATGCCTGAACAATGCAACCCA
ATGAAAGAATGTTGGTGTGTGGACAGAAACGGTGGCGAACTTCTCGGTAC
AAGAACCAAGAAAGGCTCTGCTACCTGTGATTGTAAGAAACTTTTACACT
TTTGTAATTCAACACGCTACGCGTAGAAAAAATTGTGTAGACGTTCATTA
TTTTTGAGGCTCCATGCAACATAATAGACGATTCTTTGCTAATAGCTCAT
TGTAGCTGTTTGACCTAATTTGCAAAAAAATGATCCGACTTTTCTCATGT
TTTCCCACCTTTCTATTAGTGGCTTTGAAGAGCAAATATTTTTGTCTAAC
GGAATGATGGCGTATAAAATTACATTTGATTTTTATCCAATAAGTGTTAA
ATGTTTCTCTGAGACTTTGATTGACATATAACCTCTGTGTTACATTTTCA
GCTTACAACACAAAGAACCCTTCATCGCGACTTGTCCCTTTGAATATCAA
CAATGAGCAAGGACACTAATAAATTACAATAGTGTTTGAATCATTTTCGA
AAATGACTATTTATCGGAAATTTGTTAACTTTTTGTATATGTAAAATATA
TCTATAGTTTTTTATACTCGAAACCTTCTCATTGTACATTTACGTTGGTG
TTGATATTTTTGACATCGTACGAGGCTTCGGAAAAAGCTTCTATGTTTTG
ATCTACTCAACTGAAAAGGGGTGTCTTACATAGCTTTTCATCTAAAGGTG
TTTTCGAAAAGTTCTCTATTGGATAAGCGCCAGCTTTTTCTCCTTCTGGT
GTCAGAAAAATATTTTTATATTTATGCGTTTTACATTTAGTTTTTTTACT
ACTACTGAACTACTATTATCACCCTTATTTTTTGTACGTTAAAAGAAAAA
CAGATTGAGAATTTTAGTAGATTTTTTTAGTTCAATTTTTTTCTACTCTA
TATTTTTTTTCTCTATGAAATATTAGTCTACAGGGGAGTCTCTTTACAA

Coding sequence (CDS) from alignment at sc0000309:98160..103158-

>TCONS_00018835 ID=TCONS_00018835|Name=TCONS_00018835|organism=Clytia hemisphaerica|type=CDS|length=8688bp|location=Sequence derived from alignment at sc0000309:98160..103158- (Clytia hemisphaerica)
CTTACAACACAAAGAACCCTTCATCGCGACTTGTCCCTTTGAATATCAAC
AATGAGCAAGGACACTAACTCCACCTTGCACAAATGTCATCAAGAACGTA
CCAATCTTGATGGTTCGTGGACAACCAGCACCTATGCCTGGTTTCTTTGT
ACCAAGATGTGATGATGATGGTTTTTTCATGCCTGAACAATGCAACCCAA
TGAAAGAATGTTGGTGTGTGGACAGAAACGGTGGCGAACTTCTCGGTACA
AGAACCAAGAAAGGCTCTGCTACCTGTGATTATACCGAATTAGCTTGTTC
TGATCACAAAGACCAAAAAGTTGAGAAAGCAGTTTGTTTGAAGCCTGTAC
AATGGATGTTCCATCACCTGGATGCCAATGGTGATAACCATTTGAGCGCA
AGCGAGCTCTCAGACATTGAGGATATTCAGAACGAGAAATGCATCAAACC
TTTCTTGCAATCTTGTGATCATGATAAAGATGGAAAGGTTGAATTAGCTG
AATTCTGTCGTTGTTTGTGTGTCTAGTGTCAATTAAGTGAAATGGCAGAA
TTACCAACTCGTCTTATTGATTGGTTCCATGTACTTCGCATCAATGAAAA
GGTGGAGGATATGAGAATCCAACGTATTGAAGGTGAACCCATCATGAAAG
AAGAAAATTTCTCTGATGAAAAAATGAAATCAATGTTTGGCCAGGGAACT
TCTTGGTGAAGACGATCTGAAGAGACATATCGCTTTAAAAGTCATGGAAC
AGGATAAGAAGCAAGATCCGCCAGAGGTCTTCCAAATGGATCAAGAAACA
GTGAAGAAGATTCAAGAAGCCAGATCACTCTATCAACTTCAAAAACACGA
GAAAGAAGAACTGAACAGTGCTGATACTTTTGAATGCAATTTGAAGTGTT
CAAAAGATGACAAACAGAAAGTGTGTGGTAAAGATGGTGTTACCTACAAA
TCATTTTGTCATTTGCAACTTCAATCTTGCCACCAAGGAAAGGACATTGG
CTTCGCATGTGATGGAACTTGCCCATGTGATGAAAATCTTTGTAGCGGTC
TGTCTTGCATTCATATTGGTGGAAGCCAAAAAGAAGCTTACAACACAAAG
AACCCTTCATCGCGACTTGTCCCTTTGAATATCAACAATGAGCAAGGACA
CTAACTCCACCTTGCACAAATGTCATCAAGAACGTACCAATCTTGATGGT
TCGTGGACAACCAGCACCTATGCCTGGTTTCTTTGTACCAAGATGTGATG
ATGATGGTTTTTTCATGCCTGAACAATGCAACCCAATGAAAGAATGTTGG
TGTGTGGACAGAAACGGTGGCGAACTTCTCGGTACAAGAACCAAGAAAGG
CTCTGCTACCTGTGATTATACCGAATTAGCTTGTTCTGATCACAAAGACC
AAAAAGTTGAGAAAGCAGTTTGTTTGAAGCCTGTACAATGGATGTTCCAT
CACCTGGATGCCAATGGTGATAACCATTTGAGCGCAAGCGAGCTCTCAGA
CATTGAGGATATTCAGAACGAGAAATGCATCAAACCTTTCTTGCAATCTT
GTGATCATGATAAAGATGGAAAGGTTGAATTAGCTGAATTCTGTCGTTGT
TTGTGTGTCTAGTGTCAATTAAGTGAAATGGCAGAATTACCAACTCGTCT
TATTGATTGGTTCCATGTACTTCGCATCAATGAAAAGGTGGAGGATATGA
GAATCCAACGTATTGAAGGTGAACCCATCATGAAAGAAGAAAATTTCTCT
GATGAAAAAATGAAATCAATGTTTGGCCAGGGAACTTCTTGGTGAAGACG
ATCTGAAGAGACATATCGCTTTAAAAGTCATGGAACAGGATAAGAAGCAA
GATCCGCCAGAGGTCTTCCAAATGGATCAAGAAACAGTGAAGAAGATTCA
AGAAGCCAGATCACTCTATCAACTTCAAAAACACGAGAAAGAAGAACTGA
ACAGTGCTGATACTTTTGAATGCAATTTGAAGTGTTCAAAAGATGACAAA
CAGAAAGTGTGTGGTAAAGATGGTGTTACCTACAAATCATTTTGTCATTT
GCAACTTCAATCTTGCCACCAAGGAAAGGACATTGGCTTCGCATGTGATG
GAACTTGCCCATGTGATGAAAATCTTTGTAGCGGTCTGTCTTGCATTCAT
ATTGGTGGAAGCCAAAAAGAAGCTTACAACACAAAGAACCCTTCATCGCG
ACTTGTCCCTTTGAATATCAACAATGAGCAAGGACACTAACTCCACCTTG
CACAAATGTCATCAAGAACGTACCAATCTTGATGGTTCGTGGACAACCAG
CACCTATGCCTGGTTTCTTTGTACCAAGATGTGATGATGATGGTTTTTTC
ATGCCTGAACAATGCAACCCAATGAAAGAATGTTGGTGTGTGGACAGAAA
CGGTGGCGAACTTCTCGGTACAAGAACCAAGAAAGGCTCTGCTACCTGTG
ATTATACCGAATTAGCTTGTTCTGATCACAAAGACCAAAAAGTTGAGAAA
GCAGTTTGTTTGAAGCCTGTACAATGGATGTTCCATCACCTGGATGCCAA
TGGTGATAACCATTTGAGCGCAAGCGAGCTCTCAGACATTGAGGATATTC
AGAACGAGAAATGCATCAAACCTTTCTTGCAATCTTGTGATCATGATAAA
GATGGAAAGGTTGAATTAGCTGAATTCTGTCGTTGTTTGTGTGTCTAGTG
TCAATTAAGTGAAATGGCAGAATTACCAACTCGTCTTATTGATTGGTTCC
ATGTACTTCGCATCAATGAAAAGGTGGAGGATATGAGAATCCAACGTATT
GAAGGTGAACCCATCATGAAAGAAGAAAATTTCTCTGATGAAAAAATGAA
ATCAATGTTTGGCCAGGGAACTTCTTGGTGAAGACGATCTGAAGAGACAT
ATCGCTTTAAAAGTCATGGAACAGGATAAGAAGCAAGATCCGCCAGAGGT
CTTCCAAATGGATCAAGAAACAGTGAAGAAGATTCAAGAAGCCAGATCAC
TCTATCAACTTCAAAAACACGAGAAAGAAGAACTGAACAGTGCTGATACT
TTTGAATGCAATTTGAAGTGTTCAAAAGATGACAAACAGAAAGTGTGTGG
TAAAGATGGTGTTACCTACAAATCATTTTGTCATTTGCAACTTCAATCTT
GCCACCAAGGAAAGGACATTGGCTTCGCATGTGATGGAACTTGCCCATGT
GATGAAAATCTTTGTAGCGGTCTGTCTTGCATTCATATTGGTGGAAGCCA
AAAAGAAGCTTACAACACAAAGAACCCTTCATCGCGACTTGTCCCTTTGA
ATATCAACAATGAGCAAGGACACTAACTCCACCTTGCACAAATGTCATCA
AGAACGTACCAATCTTGATGGTTCGTGGACAACCAGCACCTATGCCTGGT
TTCTTTGTACCAAGATGTGATGATGATGGTTTTTTCATGCCTGAACAATG
CAACCCAATGAAAGAATGTTGGTGTGTGGACAGAAACGGTGGCGAACTTC
TCGGTACAAGAACCAAGAAAGGCTCTGCTACCTGTGATTATACCGAATTA
GCTTGTTCTGATCACAAAGACCAAAAAGTTGAGAAAGCAGTTTGTTTGAA
GCCTGTACAATGGATGTTCCATCACCTGGATGCCAATGGTGATAACCATT
TGAGCGCAAGCGAGCTCTCAGACATTGAGGATATTCAGAACGAGAAATGC
ATCAAACCTTTCTTGCAATCTTGTGATCATGATAAAGATGGAAAGGTTGA
ATTAGCTGAATTCTGTCGTTGTTTGTGTGTCTAGTGTCAATTAAGTGAAA
TGGCAGAATTACCAACTCGTCTTATTGATTGGTTCCATGTACTTCGCATC
AATGAAAAGGTGGAGGATATGAGAATCCAACGTATTGAAGGTGAACCCAT
CATGAAAGAAGAAAATTTCTCTGATGAAAAAATGAAATCAATGTTTGGCC
AGGGAACTTCTTGGTGAAGACGATCTGAAGAGACATATCGCTTTAAAAGT
CATGGAACAGGATAAGAAGCAAGATCCGCCAGAGGTCTTCCAAATGGATC
AAGAAACAGTGAAGAAGATTCAAGAAGCCAGATCACTCTATCAACTTCAA
AAACACGAGAAAGAAGAACTGAACAGTGCTGATACTTTTGAATGCAATTT
GAAGTGTTCAAAAGATGACAAACAGAAAGTGTGTGGTAAAGATGGTGTTA
CCTACAAATCATTTTGTCATTTGCAACTTCAATCTTGCCACCAAGGAAAG
GACATTGGCTTCGCATGTGATGGAACTTGCCCATGTGATGAAAATCTTTG
TAGCGGTCTGTCTTGCATTCATATTGGTGGAAGCCAAAAAGAAGCTTACA
ACACAAAGAACCCTTCATCGCGACTTGTCCCTTTGAATATCAACAATGAG
CAAGGACACTAACTCCACCTTGCACAAATGTCATCAAGAACGTACCAATC
TTGATGGTTCGTGGACAACCAGCACCTATGCCTGGTTTCTTTGTACCAAG
ATGTGATGATGATGGTTTTTTCATGCCTGAACAATGCAACCCAATGAAAG
AATGTTGGTGTGTGGACAGAAACGGTGGCGAACTTCTCGGTACAAGAACC
AAGAAAGGCTCTGCTACCTGTGATTATACCGAATTAGCTTGTTCTGATCA
CAAAGACCAAAAAGTTGAGAAAGCAGTTTGTTTGAAGCCTGTACAATGGA
TGTTCCATCACCTGGATGCCAATGGTGATAACCATTTGAGCGCAAGCGAG
CTCTCAGACATTGAGGATATTCAGAACGAGAAATGCATCAAACCTTTCTT
GCAATCTTGTGATCATGATAAAGATGGAAAGGTTGAATTAGCTGAATTCT
GTCGTTGTTTGTGTGTCTAGTGTCAATTAAGTGAAATGGCAGAATTACCA
ACTCGTCTTATTGATTGGTTCCATGTACTTCGCATCAATGAAAAGGTGGA
GGATATGAGAATCCAACGTATTGAAGGTGAACCCATCATGAAAGAAGAAA
ATTTCTCTGATGAAAAAATGAAATCAATGTTTGGCCAGGGAACTTCTTGG
TGAAGACGATCTGAAGAGACATATCGCTTTAAAAGTCATGGAACAGGATA
AGAAGCAAGATCCGCCAGAGGTCTTCCAAATGGATCAAGAAACAGTGAAG
AAGATTCAAGAAGCCAGATCACTCTATCAACTTCAAAAACACGAGAAAGA
AGAACTGAACAGTGCTGATACTTTTGAATGCAATTTGAAGTGTTCAAAAG
ATGACAAACAGAAAGTGTGTGGTAAAGATGGTGTTACCTACAAATCATTT
TGTCATTTGCAACTTCAATCTTGCCACCAAGGAAAGGACATTGGCTTCGC
ATGTGATGGAACTTGCCCATGTGATGAAAATCTTTGTAGCGGTCTGTCTT
GCATTCATATTGGTGGAAGCCAAAAAGAAGCTTACAACACAAAGAACCCT
TCATCGCGACTTGTCCCTTTGAATATCAACAATGAGCAAGGACACTAACT
CCACCTTGCACAAATGTCATCAAGAACGTACCAATCTTGATGGTTCGTGG
ACAACCAGCACCTATGCCTGGTTTCTTTGTACCAAGATGTGATGATGATG
GTTTTTTCATGCCTGAACAATGCAACCCAATGAAAGAATGTTGGTGTGTG
GACAGAAACGGTGGCGAACTTCTCGGTACAAGAACCAAGAAAGGCTCTGC
TACCTGTGATTATACCGAATTAGCTTGTTCTGATCACAAAGACCAAAAAG
TTGAGAAAGCAGTTTGTTTGAAGCCTGTACAATGGATGTTCCATCACCTG
GATGCCAATGGTGATAACCATTTGAGCGCAAGCGAGCTCTCAGACATTGA
GGATATTCAGAACGAGAAATGCATCAAACCTTTCTTGCAATCTTGTGATC
ATGATAAAGATGGAAAGGTTGAATTAGCTGAATTCTGTCGTTGTTTGTGT
GTCTAGTGTCAATTAAGTGAAATGGCAGAATTACCAACTCGTCTTATTGA
TTGGTTCCATGTACTTCGCATCAATGAAAAGGTGGAGGATATGAGAATCC
AACGTATTGAAGGTGAACCCATCATGAAAGAAGAAAATTTCTCTGATGAA
AAAATGAAATCAATGTTTGGCCAGGGAACTTCTTGGTGAAGACGATCTGA
AGAGACATATCGCTTTAAAAGTCATGGAACAGGATAAGAAGCAAGATCCG
CCAGAGGTCTTCCAAATGGATCAAGAAACAGTGAAGAAGATTCAAGAAGC
CAGATCACTCTATCAACTTCAAAAACACGAGAAAGAAGAACTGAACAGTG
CTGATACTTTTGAATGCAATTTGAAGTGTTCAAAAGATGACAAACAGAAA
GTGTGTGGTAAAGATGGTGTTACCTACAAATCATTTTGTCATTTGCAACT
TCAATCTTGCCACCAAGGAAAGGACATTGGCTTCGCATGTGATGGAACTT
GCCCATGTGATGAAAATCTTTGTAGCGGTCTGTCTTGCATTCATATTGGT
GGAAGCCAAAAAGAAGCTTACAACACAAAGAACCCTTCATCGCGACTTGT
CCCTTTGAATATCAACAATGAGCAAGGACACTAACTCCACCTTGCACAAA
TGTCATCAAGAACGTACCAATCTTGATGGTTCGTGGACAACCAGCACCTA
TGCCTGGTTTCTTTGTACCAAGATGTGATGATGATGGTTTTTTCATGCCT
GAACAATGCAACCCAATGAAAGAATGTTGGTGTGTGGACAGAAACGGTGG
CGAACTTCTCGGTACAAGAACCAAGAAAGGCTCTGCTACCTGTGATTATA
CCGAATTAGCTTGTTCTGATCACAAAGACCAAAAAGTTGAGAAAGCAGTT
TGTTTGAAGCCTGTACAATGGATGTTCCATCACCTGGATGCCAATGGTGA
TAACCATTTGAGCGCAAGCGAGCTCTCAGACATTGAGGATATTCAGAACG
AGAAATGCATCAAACCTTTCTTGCAATCTTGTGATCATGATAAAGATGGA
AAGGTTGAATTAGCTGAATTCTGTCGTTGTTTGTGTGTCTAGTGTCAATT
AAGTGAAATGGCAGAATTACCAACTCGTCTTATTGATTGGTTCCATGTAC
TTCGCATCAATGAAAAGGTGGAGGATATGAGAATCCAACGTATTGAAGGT
GAACCCATCATGAAAGAAGAAAATTTCTCTGATGAAAAAATGAAATCAAT
GTTTGGCCAGGGAACTTCTTGGTGAAGACGATCTGAAGAGACATATCGCT
TTAAAAGTCATGGAACAGGATAAGAAGCAAGATCCGCCAGAGGTCTTCCA
AATGGATCAAGAAACAGTGAAGAAGATTCAAGAAGCCAGATCACTCTATC
AACTTCAAAAACACGAGAAAGAAGAACTGAACAGTGCTGATACTTTTGAA
TGCAATTTGAAGTGTTCAAAAGATGACAAACAGAAAGTGTGTGGTAAAGA
TGGTGTTACCTACAAATCATTTTGTCATTTGCAACTTCAATCTTGCCACC
AAGGAAAGGACATTGGCTTCGCATGTGATGGAACTTGCCCATGTGATGAA
AATCTTTGTAGCGGTCTGTCTTGCATTCATATTGGTGGAAGCCAAAAAGA
AGCTTACAACACAAAGAACCCTTCATCGCGACTTGTCCCTTTGAATATCA
ACAATGAGCAAGGACACTAACTCCACCTTGCACAAATGTCATCAAGAACG
TACCAATCTTGATGGTTCGTGGACAACCAGCACCTATGCCTGGTTTCTTT
GTACCAAGATGTGATGATGATGGTTTTTTCATGCCTGAACAATGCAACCC
AATGAAAGAATGTTGGTGTGTGGACAGAAACGGTGGCGAACTTCTCGGTA
CAAGAACCAAGAAAGGCTCTGCTACCTGTGATTATACCGAATTAGCTTGT
TCTGATCACAAAGACCAAAAAGTTGAGAAAGCAGTTTGTTTGAAGCCTGT
ACAATGGATGTTCCATCACCTGGATGCCAATGGTGATAACCATTTGAGCG
CAAGCGAGCTCTCAGACATTGAGGATATTCAGAACGAGAAATGCATCAAA
CCTTTCTTGCAATCTTGTGATCATGATAAAGATGGAAAGGTTGAATTAGC
TGAATTCTGTCGTTGTTTGTGTGTCTAGTGTCAATTAAGTGAAATGGCAG
AATTACCAACTCGTCTTATTGATTGGTTCCATGTACTTCGCATCAATGAA
AAGGTGGAGGATATGAGAATCCAACGTATTGAAGGTGAACCCATCATGAA
AGAAGAAAATTTCTCTGATGAAAAAATGAAATCAATGTTTGGCCAGGGAA
CTTCTTGGTGAAGACGATCTGAAGAGACATATCGCTTTAAAAGTCATGGA
ACAGGATAAGAAGCAAGATCCGCCAGAGGTCTTCCAAATGGATCAAGAAA
CAGTGAAGAAGATTCAAGAAGCCAGATCACTCTATCAACTTCAAAAACAC
GAGAAAGAAGAACTGAACAGTGCTGATACTTTTGAATGCAATTTGAAGTG
TTCAAAAGATGACAAACAGAAAGTGTGTGGTAAAGATGGTGTTACCTACA
AATCATTTTGTCATTTGCAACTTCAATCTTGCCACCAAGGAAAGGACATT
GGCTTCGCATGTGATGGAACTTGCCCATGTGATGAAAATCTTTGTAGCGG
TCTGTCTTGCATTCATATTGGTGGAAGCCAAAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010548XLOC_010548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018835-exon-sc0000309-1575043694:103053..103158TCONS_00018835-exon-sc0000309-1575043694:103053..103158Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:101411..101481TCONS_00018835-exon-sc0000309-1575043694:101411..101481Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:100886..101033TCONS_00018835-exon-sc0000309-1575043694:100886..101033Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:100652..100767TCONS_00018835-exon-sc0000309-1575043694:100652..100767Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:100470..100548TCONS_00018835-exon-sc0000309-1575043694:100470..100548Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:100081..100242TCONS_00018835-exon-sc0000309-1575043694:100081..100242Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:99413..99655TCONS_00018835-exon-sc0000309-1575043694:99413..99655Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:99027..99239TCONS_00018835-exon-sc0000309-1575043694:99027..99239Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1575043694:98160..98707TCONS_00018835-exon-sc0000309-1575043694:98160..98707Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:103053..103158TCONS_00018835-exon-sc0000309-1510915933:103053..103158Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:101411..101481TCONS_00018835-exon-sc0000309-1510915933:101411..101481Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:100886..101033TCONS_00018835-exon-sc0000309-1510915933:100886..101033Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:100652..100767TCONS_00018835-exon-sc0000309-1510915933:100652..100767Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:100470..100548TCONS_00018835-exon-sc0000309-1510915933:100470..100548Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:100081..100242TCONS_00018835-exon-sc0000309-1510915933:100081..100242Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:99413..99655TCONS_00018835-exon-sc0000309-1510915933:99413..99655Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:99027..99239TCONS_00018835-exon-sc0000309-1510915933:99027..99239Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1510915933:98160..98707TCONS_00018835-exon-sc0000309-1510915933:98160..98707Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:103053..103158TCONS_00018835-exon-sc0000309-1491911889:103053..103158Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:101411..101481TCONS_00018835-exon-sc0000309-1491911889:101411..101481Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:100886..101033TCONS_00018835-exon-sc0000309-1491911889:100886..101033Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:100652..100767TCONS_00018835-exon-sc0000309-1491911889:100652..100767Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:100470..100548TCONS_00018835-exon-sc0000309-1491911889:100470..100548Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:100081..100242TCONS_00018835-exon-sc0000309-1491911889:100081..100242Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:99413..99655TCONS_00018835-exon-sc0000309-1491911889:99413..99655Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:99027..99239TCONS_00018835-exon-sc0000309-1491911889:99027..99239Clytia hemisphaericaexon
TCONS_00018835-exon-sc0000309-1491911889:98160..98707TCONS_00018835-exon-sc0000309-1491911889:98160..98707Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018835-proteinTCONS_00018835-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:98160..103158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
68.3613	68.3027	40.5505	37.7033	41.4624	31.5611	51.3253	54.7864	80.9045	66.4662	59.3789	68.3884	184.608	172.439	112.471	87.1645	103.972	136.416	177.793	214.023	159.294	151.363	113.497	126.321	120.875	123.92	125.125	109.353	83.9272	90.4793
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002350Kazal_dom
IPR000716Thyroglobulin_1
IPR019577SPARC/Testican_Ca-bd-dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005578proteinaceous extracellular matrix
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005578 proteinaceous extracellular matrix
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00018835 vs. Swiss-Prot (Human)
Match: TICN2 (Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.370e-32
Identity = 95/309 (30.74%), Postives = 129/309 (41.75%), Query Frame = 1 
Query:  217 VCGKDGVTYKSFCHLQLQSCHQGKDIGFACDGTCPCDPPEVFQMDQETVKKIQEARSLYQLQKHEKEELNSADTFLARELLGEDDLKRHIALKVMEQDKKQECQLSEMAELPTRLIDWFHVLRINEKVEDMRIQRIEGEPIMKEENFSDEKMKSMYTELACSDHKDQKVEKAVCLKPVQWMFHHLDANGDNHLSASELSDIEDIQNEKCIKPFLQSCDHDKDGKVELAEFCRCLCV-SPPCTNVIKNVPILMVRGQPAPMPGFFVPRCDDDGFFMPEQCN-PMKECWCVDRNGGELLGTRTKKGSATCD 1137
            VCG DG TY S C L+ Q+C   K +   C+G CPC                            E+   ++AD                         K + C   ++A+L  RL DWF +L  N K                 +N S   +    + L        K   A C   + WMF  LD + D  L  +EL+ I   + E CI+PF  SCD  KDG+V  AE+C C     PPC   ++ + I     +    PG F+P CD+DG++   QC+    +CWCVD+ G EL GTRT  GS  CD
Sbjct:  147 VCGSDGHTYSSVCKLEQQACLSSKQLAVRCEGPCPC--------------------------PTEQAATSTADG------------------------KPETCTGQDLADLGDRLRDWFQLLHENSK-----------------QNGSASSVAGPASGL-------DKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWREKPPCLAELERIQIQEAAKK---KPGIFIPSCDEDGYYRKMQCDQSSGDCWCVDQLGLELTGTRT-HGSPDCD 377
The following BLAST results are available for this feature:
BLAST of TCONS_00018835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TICN22.370e-3230.74Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1 SV=1[more]
back to top