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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018822 ID=TCONS_00018822|Name=TCONS_00018822|organism=Clytia hemisphaerica|type=transcript|length=771bp
GTTTTGCCGGACAAAGAAAACAACGGACTCAGAGTTGTTTATAATAAGAT
CTACAAATTGAAAGATGGAGGACATCATTTGGCTGCTCACGAACAAAAGA
ATACTCCACTCGGAGGAGGAGTTGTCGATATTCCAAATTATCATCATGTT
CATGCTGGAAGCATCTTCTCGAAAGATCCCGAAGAAACACGAGACCACAT
GTGTTTGGTCGAAACTGTTAGAGCTGTAAATCTTGAAACATACAACTAaa
gtattttattatttattatgctaatataagatttattttgtttcctacaa
atcttttttatctaaaaaggtATAGTATTTGTAATTTTCGgtctttgatt
tttaaagaaagaaactgaataaaagataatcttttttacatttttaccaT
GTGCTTTGGTTAATCTGAATCGCAGCAACTACCtggatatacttcctata
taggATCCGATCTACCAAGTATTAAGCAGCCTCTACAGTATAGCCTATTT
TTTGGTCTGAATTGTCaagtattgaaattttcaatgtCAAGAGATTTAAT
TCCTACGTAGTGTGGACACCTAAAGAGCTGCTGAAGTCTTTCTTTTTCAC
TTTGGAACAAGGCCGCAATTATCTTGTTATTCTTAAATGTCTTATAACAC
AGTGTACGtttctttttaagaacaaacaatacaagaacttaagggctctg
accatagtcggaaaattgattttagtatttgaacataaaagttatgtttt
aggttctttaacacatTCAAC Run BLAST on NCBI transcript from alignment at sc0000309:235535..239614+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018822 ID=TCONS_00018822|Name=TCONS_00018822|organism=Clytia hemisphaerica|type=transcript|length=4080bp|location=Sequence derived from alignment at sc0000309:235535..239614+ (Clytia hemisphaerica)
GTTTTGCCGGACAAAGAAAACAACGGACTCAGAGTTGTTTATAATAAGGT
AAGTTCTTCTAGGGGatatttgttttattgtttttgtcgATATTGAATTC
AACAAATAATTCTTGATAGCTTCAAACTATACCCGGACCACTGCCCTACA
GGAAAATTGGACTAAAATTTCATCCACGGGGAAAACATGATTTTGATTGA
AACTTTTATCCCCACCTGTGGGAAAGATTTCCATCGTGGCCATGAGACAG
GTGTGTACGTATTCCAAAGACAAACCTTTCAGAAATCTACTGTATGTAAA
TTTTTCTCATGTCCTCATGGTGTTTTAGCGGATTCCAGCTTGCACCAGTT
TTTTCAGTCTTAATCCTTTCCAAATTTTTATGTTCTTTCTTTTCTGTCgt
tcttatttattttgaatctttATCTTTGTTCACAGATCTACAAATTGAAA
GATGGAGGACATCATTTGGCTGCACACGAACAAAAGAATATTCCACTTGG
CGGAGGAGTTGTTGATATTCCAAATTATCATCATCTTCATATTGGAAACA
TCTTTTCGAAAGATCTCGAAGAAACACGAGACCATATGTGTTTGGTTGAA
ACTGTCAGAGCTGTAAATCTTGAAACATATAACTAAAACATTTTATTATT
CATTATGCTATTATAGAATTTATCTAGCAGTCTCGTCATAGTTATTTAGT
TAATCTTTCACTCATATGTAACACTTTTTGGATTTACTGATGGGTTTAAT
ACAGTTTTGAGTGTCATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCAATAAT
TTACATcacaaattattttgaaaacaaagggGCTTAAAACAAGGTGGTTA
CTCTTGACAACTGGAATTAATTAATACATCAATTGAGGCCGAGTCAAAAG
TTTAGTATAAAAGGAGCAAAAACTTTCCCAGTGAATCATTCACAGAAGAA
ACAAGAATCAAAGAAACTTGCAACAAACAATCTCCAACCACTAAAACAAT
GGCTTCTGCAGGCGCACTTCTCTTAAATCAAGAAGTCCCATTCATCATGG
AGCTAGACGCTGAAGTTAACGGAATCAGATTTGCAGTTCGTGGCAAGGGA
ACAGGGGACGCAACAACTGGCATCATCGACACCAAATTCGTATGTACCAC
TGGTGAATTGCCAGTACCGTGGGCTTCAATCTCAAGCACAATGGCATATG
GAGCTTTGTAAGTATCTGATACTTTTAACGGAATAACTAGAAGACTACAA
CCAAAAGTTCTCAGTTCAAGTCCTCGTTCGATCCATAGATAGCAAACCCT
GGTCATTGTAAACCTTGTGAAATCACGATCGCTATGATTCCCCTATCCTG
GGTAGATCCATAACATTTGCATAGGGGGACCGTCCTTTCTTTGTAGTTct
attagcctatttcataggattcgtgtttttAGTACATGATACTTTTCTCC
ATAACTACAGTAATcaacttaaaaaaaatagaatgtAACAAATGCTCGAA
TCCTTTGAAATAGGATATCACCAATCTCTTACTCAAAGTTCTGCCTTCTG
TATCATTCTTATCAGTTTCtatatcattcttatcaaatttctttcatttt
tagatGTTTTGCCAAATATCCAGACAgtgttaaagattttttcaaatcaa
CAATGCCAGATGGTTATATCCAAGAAAGGACCATCAACTTCGAAAATGAT
GGTACATACAAAGTTCGTGGTGTAGTTACTTACGAACATGGTTCTATTTA
CAATCGCGTCACACTTAAAGGAGAAGGATTAAAAAAAGACGGACTCATCC
TTCAAAAACAATACGAATTTTGCTGTCCGAATAGTGCCGTTTACGTTTTG
CCGGACAAAGAAAACAACGGACTCCGGGTTGTTTATAATACAGTAAGTTC
TTCTTTTTACgagatattttttttattttttttgtcgatATTGAATTCAA
ACAAATAATTCTTGATAGCTAGAAACTATACCCGGTAGGACCATTGCCCT
ATcggaaaatttggctaaaagtTCATCCACGGGGGAAGACCCCACAACTT
CAGTCCCACTTTCaatttgatttcatccctatttgaaattcaattgaaGA
AATTGTACTCCCAAAACCGTCTTCAACTTTTATCCCACCTGTGGGAAAAA
CGTTTATCGTGGCCATGAGATAGGTGTGTAcgtactttaatcgtagaaat
tttagcgagactaattttagcgttttagcgagttttccctattttcgcta
aaataaatctcgctaaaacacgccgaatcgaaaGATTGcttgctaaaatt
tatccgctcgaaatttctggttatattgccttgatacatttttatcaata
tgaAGGATTTCAGtacaaagaaatgctagaaaacgaattcagtcaataat
gtaatacaagtcttcgctaaaatttatccatgcgaaattatttgaaaccg
tgattcgctaaaatattgctacgattaaagtattccAAAGACAAACGTTT
TATAAATTCATTGTATGTAGAGGCTTTTTCTTCCATGTCCTAATGATGTT
TTAGAGAATTCCAGCTTGCGCCAGATTTTTTCACTGGTGATCCTCTCcaa
atgtttatgtttatttcTGTCTTGCCTATTATTTTGAATCTTTATCTTTG
TTCACAGATCTACAAATTGAAAGATGGAGGACATCATTTGGCTGCTCACG
AACAAAAGAATACTCCACTCGGAGGAGGAGTTGTCGATATTCCAAATTAT
CATCATGTTCATGCTGGAAGCATCTTCTCGAAAGATCCCGAAGAAACACG
AGACCACATGTGTTTGGTCGAAACTGTTAGAGCTGTAAATCTTGAAACAT
ACAACTAaagtattttattatttattatgctaatataagatttattttgt
ttcctacaaatcttttttatctaaaaaggtATAGTATTTGTAATTTTCGg
tctttgatttttaaagaaagaaactgaataaaagataatcttttttacat
ttttaccaTGTGCTTTGGTTAATCTGAATCGCAGCAACTACCtggatata
cttcctatataggATCCGATCTACCAAGTATTAAGCAGCCTCTACAGTAT
AGCCTATTTTTTGGTCTGAATTGTCaagtattgaaattttcaatgtCAAG
AGATTTAATTCCTACGTAGTGTGGACACCTAAAGAGCTGCTGAAGTCTTT
CTTTTTCACTTTGGAACAAGGCCGCAATTATCTTGTTATTCTTAAATGTC
TTATAACACAGTGTACGtttctttttaagaacaaacaatacaagaactta
agggctctgaccatagtcggaaaattgattttagtatttgaacataaaag
ttatgttttaggttctttaacacatTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018822-exon-sc0000309-1491911889:235535..235582 | TCONS_00018822-exon-sc0000309-1491911889:235535..235582 | Clytia hemisphaerica | exon |
| TCONS_00018822-exon-sc0000309-1510915933:235535..235582 | TCONS_00018822-exon-sc0000309-1510915933:235535..235582 | Clytia hemisphaerica | exon |
| TCONS_00018822-exon-sc0000309-1575043694:235535..235582 | TCONS_00018822-exon-sc0000309-1575043694:235535..235582 | Clytia hemisphaerica | exon |
| TCONS_00018822-exon-sc0000309-1491911889:238892..239614 | TCONS_00018822-exon-sc0000309-1491911889:238892..239614 | Clytia hemisphaerica | exon |
| TCONS_00018822-exon-sc0000309-1510915933:238892..239614 | TCONS_00018822-exon-sc0000309-1510915933:238892..239614 | Clytia hemisphaerica | exon |
| TCONS_00018822-exon-sc0000309-1575043694:238892..239614 | TCONS_00018822-exon-sc0000309-1575043694:238892..239614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:235535..239614 + |
Blast
The following BLAST results are available for this feature:
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