TCONS_00018815 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018815
Unique Name	TCONS_00018815
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3180

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000309:152319..163277+

transcript sequence

>TCONS_00018815 ID=TCONS_00018815|Name=TCONS_00018815|organism=Clytia hemisphaerica|type=transcript|length=3180bp
GTCAGTCACGCCCGACTGATCACAAACTGGAGAAGACAAACAAGCTGGCG
GATTCATGCATGATCAGTAGACcataagatttttaaaaaatggaaatttt
caaacatcaTCGATCACTGTTTGAAATAGAAAGTGTTGATAAACATGTAG
TTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGATCTTGATATCAGC
CAAACTTTGCAGGATGAAGCTGCTGCATTGCAAAGTGAACCCAAAACAAT
CACAAAGAATGAAGATGGCAACACTCAGAGTTGCAGTCAAAAGTCAGGTC
ATGGAGGTGTCAATCAACTTGGTGGTGCCTTTGTCAACGGAAGACCTTTA
CCAGAGCGCATTCGGAAGAAGATAGTGGACCTTGCTCATCAAGGAGTTCG
CCCTTGTGATATATCGAGACAATTACGCGTTTCTCATGGTTGTGTGCAAT
CCCGATTCCTATCGGAGCTTTACCGGCAAATCTGAACTCGTTGAATAAGT
TACCACACACACCATACTCCGTGAATGGGATCCTCGGGATAGCTGTTCAA
CAACCAAACGGAACTGTCATTATGTGTCCACCTGAATATTTTGCAGCACA
CCAAGTTCAAGGGGCCACTGACTTGTCACCCACTGAACATACCAATGGAA
TGGCAATCCAAGTGGTGAACGAAGCTGAAGATTCTCACACTATGGCTGAC
ACACCTAATTTAGCTGCTGCACAATacttaATACCGATCGGGTCAACGGA
GGACAATCAGAACTTGGTGCAAATCAACTACCCTCCATCATTACCTTCTC
TCGAAGCAGAAACTGTTGAGAAAGAACATCCCCTACCACAACCTCCGTCT
TCACTTGTCGAAGACGTTTCCATTCCTCCAACCAAACTACACATCAATAC
AACCAGCATTGAGAATAAACTGAAGGAGAACATTGATAACAGTATCTCAG
CCTCCAATAAAATCTTGATGAAGACAACACTGAACATCAACACAGACTCT
CAAGAAGAGGAACCATTGCGTGTCCACCAATCACCTTCACCCACCACTAA
ATACATCTACACCAACCCATCACACCAAGAAGAGGAGAACTACGAAGCAA
GACATCCACTGCAAATCCAACCAGCTTTCTTTCCCAACAGTCCTCAAACA
TCCCCGGTCTCTAAGCATTTCCTCGAACACGACCGCAAACCAGGTCGACG
TTTAAGGACGTCTTTTTCCACCGAACAAAAACAAGCGTTAGAAGTGGCCT
TCAAGAAAACACCGTACCCTGACGCCATCCAACGAGAACAACTGGCCACC
AAAAATCAAATTCCGGAAGCCAGAGTACAGGTTTGGTTTTCGAATAAAAG
AGCCAAGCATCGGCGGCTGGACAAAAACTTCGACTTGCTGAAACCATCTA
AGAGAAGAAATTCCAAAAGCATCGAATCTCCATTATCTCCACCATATCAT
CCACACATGACACCAACATACGTTCCTTTATCACAACAACATTCACAAAT
CTTTCATCCATCTCTTATCCCCATCATACCAGCAGCAGGCCAACAAATCG
CTCTCATTTCGCCATCACATCTTTATAACAGTGTCCCTCCATCGTCGAAG
GAATCTGTTGAAGAACATTCGAAGAAAACGAACGAGCCAACGCCAGTAGC
AACAGCCAATGAACATTCCCCTAAAAATATAACATACATTACTGCACCTA
CATTGAATTCTGAACAGCCAACAATGATACCGATTGGGGCGGTTCACCAC
CGCACACACACGGAAGAAGCGATGGAAGAAATGCCGCAAAGACCTGAACA
GACTAATCTTGACACGACTGACGACTCACCATTGACAATAACAAATGCTA
ACTTACATTCTAACAACCTCACTAACAACACTGAAACTGAAGAATCCAAA
CATGTTCTTCCTTCCATGAAAGTTTTGACAAGATACAACGATCGTCACCA
TCCATCACTTTCTCATTCTTTCATCCCACCCGAAcaatggttgaaaaatt
cggCTGCTATCGCTCTTGGCGGTCGAGCTTCATGgacaTCTCCCTTGACA
CCGTCACCTCCTCCGTTACATGTTGTCTCATCTTCTGGACAATGATGATG
ATTTTCTGGGAAACTTTGCTGTGCAAATATACCAATGCGGTGAAATCACC
ATCATTGTGACAATTAACGATTACTAACAACACAAATTAACTACTTTACA
ATAACATCATTTACATTTACATCTACTTGCTTGTTGGAATCTTTAAGAGT
AGTAGGAGGTAACAGGGCACTTTTTAAAGTTCTGAAATGAGTCCACTCAG
CAGGTTGTCAATGACGTGTCTAAGGATATTTTTGGCATAATAGGCTTTAG
ATATTAGATATTCGATTATATTTAgagattttgggaatttttaCGATTGT
GATCGTGACGagagtaaaataatttttgtaggCCCTGTTGGTACTTGTTC
CCAAAGTGTACACAAGCATTTATTATCCGGCTTGGTATTCTGCCTGAAAa
ggtacaaaaagaaagagctagagggctttttagaaataagatcataaatc
ttttttgaaaatcagagatcCTCGAGCCTCCATAATAGTTAACTCCTTTG
CGAACAAAGCTAGAGCattatttgttttttgaaaCAATGGAGGAGGGACA
ATTTTTTCTCTCCACCGGTCACTTTAGTCGGTTATctagtgtctataata
attccttggTGTATTTTTAGGAATATTTTGGTTCGTTTGTCTTTTGGGAC
TGGTGGACGGGTTCTTCACCAAAGTTAAGTGCTGAGCGCTGATTATCTTC
AAAAGTATATTCAGCATTCCACATTTCAACTCTTGTATTATTAAACCTAT
GAACTTCTACAAAACCAAACGGTGTGACGTGACGACTGACGACTTTTCGT
TATCGTCCCCTGAAATTAGTAGATTTCATGTTCAATGTCCTTTTCATCAT
ACGCAGAGTACAGAAtagaatattttttattaatttttctagtttttttt
ttggaattgtaAAAAATTATCTATATGGatgttaaaatttcttttagagt
cgagtttttatatataaatagtataatttcgttatttttggtATGGACTT
TTTATCCATAATTTTTTGGAGCaaattttgggaatatttaaAATGGAATT
AATCAATGaatttattctttcaattttctt

Run BLAST on NCBI

transcript from alignment at sc0000309:152319..163277+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018815 ID=TCONS_00018815|Name=TCONS_00018815|organism=Clytia hemisphaerica|type=transcript|length=10959bp|location=Sequence derived from alignment at sc0000309:152319..163277+ (Clytia hemisphaerica)
GTCAGTCACGCCCGACTGATCACAAACTGGAGAAGACAAACAAGCTGGCG
GATTCATGCATGATCAGTAGACcataagatttttaaaaaatggaaatttt
caaacatcaTCGATCACTGTTTGAAATAGAAAGTGTTGATAAACATGTAG
TTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGNAGTGTTGATAAAC
ATGTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGATCTTGAT
ATCAGCCAAACTTTGCAGGATGAAGCTGCTGCATTGCAAAGTGAACCCAA
AACAATCACAAAGAATGAAGATGGCAACACTCAGAGTTGCAGTCAAAAGT
CAGGTATAAACTTTTCAGTCATGTTTAACTTATCATACTAAAAACCTTGC
TGTATATCTtactgtgagatcgggtaacttgcatcagtggaggctaacat
gcatagccctcaaatgaaggACTCGTCTGGTcatttaaaaatacaaagtt
aaatcaaaacaaaaatcgtaGAGTaaagctgcgagcggagctgaatatag
tttattttaatgaccagccaggtcactcattttagggctatgcatgttag
cgtccactgatgcaagttacccactctcacggtagTATACTAAAGACATA
ATATTGTTATGATGGGGTACCCAGTGTGTCAGCGTGAgtccaggcgtagt
taatcgatataatcgataatcttgagtaatcgataaataatcgataagta
atcgaatGGATtagacagtcaggcacatcctggcaaatgaacgggtattt
ttcacttgcgaccattggcaaatgaacggggtcgaaaacgaaagtgacgt
aatagcgccgaatacccagtttaattgaaccgggttggaaatatNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTAGGCCCTATGCT
ACCAggggattggattcaattcaaaagtacatcccaattgagatcagcga
aaaatgttgcttttaatttcgcgaaaatggcgaaaatttgagaaatcgag
aaatttaatctcgcgaaaatggcgaaagttaatccaattaaagtaccact
ccctaaaatctgaGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCACGA
ATCGATAGTTGATCGATTAACTATTTGATCgatgattaatcaatttttga
tcgatatgtaatcgatcaaaagctgtgatcgatagccGATCAATTTTAAa
tcgatacttaatttaattgaagtataatcgatctataatcgataaacaat
cgatgacaaaattgatcgataaataatcaagctttgaaaaaatcttaagT
ATCGATTACCTTTCGATtttatcggttaatcgatatctaatccggatcga
ttacttatcgattatttatcgattactcaaaattatcgattatatcgatt
aactacgcctggctTAGTTTATAAAGATTCCTGTTTATTTATATCGACAG
TTTATTTTGCTGGGATTTCTTTTTGCTAATagtccagacggtactaatcg
aacgttcgattgtgatcgaagtaatcaataatgatcaaTAATAATTGAAG
GTGATCAGTGACCacttatcgattctatcggtgatcgaatactcactcAA
CTCCAAATCATGGCATTTTCTTCgaccattttgatttgttcgaTCGTTTT
GATTACTGTTCAATTACTTTCAATCACTTTCAATCATATTGAATACTTCC
GATCATATTGTGTCGGATATGTTTCCTGTAGCAAAGCGATGGAATCTGAA
ACCGAGTTTATCTTGtccaataaattttgagactgaGTTTATTTCCTCCA
ATAAAAAAACACGCAATTTACACGCGAAAACCACTTTTGCTTTCTCTGAC
CAATCAAAATGCGCGATATGGGTTAtttgaggaaacccagggcaAGCACA
CTCAAAAATGGCAGGGAAGTACTGAACAGTTACATCATTATgccaaaaca
ttttgttcaaccaccttcacttcaagataggccaccatataATGAACTTc
tttttataggatgaaccatattcatatggctttcagccttgcactccatc
gcaaaggctttcaattttaatgacttttttgactaatgacaagttaaaaa
ttttcaattttttNtatgtgtttcattgtttcaatgtttattgattagtt
ttgataaccaggtaggtccataaaagtatcacttgttatatttaagtatt
aaaaaggcatgcattcaaattataaaggtttaaattttttctctgggcta
tttattaaaatatatcaaataggctctgtgatggagtgtaCACATGAATA
TGGTACATCCCttaaaggaagttcattctgtGATGGCCTCTCTTAGAGTG
AGGATGgctgaacaaaatgttttggtcatatcagggggggggcacgcagt
tactacaagacagtatgacacttactaccgtggtggtactgtattcagaa
attatgaaaacagttactacacaatGTAGTAACTGctttttgggggtggt
gccaaacactaaaactagtacttttggtgtagtaagtgcttatatttaat
tctttttaaagaactttcaaaaattttcacaaaaaatgaatttttttgtg
aaaaaattctttgttaaaaaaaatattttaaaataaatggacgaaaaaaa
atttgaaatttttctcagatccaactttgaaattatgctttccctaatta
tcattgaAATgctctcaacagctgttaaccaagcaaattaaaagaaaatc
tagcacaaaaatggctttaggttgaaaaataatcgtaatttagggtaatt
tcgagcatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctcaaaaacaggggtg
gtacctggtaatcttttctgaaaacagttactaccaaggtgtagtaactg
caaagggtggtggtcctgaaaaaaaagtgttgaaaaagcacttactacac
atcatgtcttgtagtaactgcgtgcccccctgGGTCATATTGATGTATAT
AACTGCTGAAGGTGATTCTTATGGCTTCTTTTTGTGGTTTGGTTTTaggt
caatgtttttggtttttccaaGGTATCTAGATGTAATCAATCAACTggtt
atcgaagtaatcaattggttatcgaaagtaatcaataacaatcaaagtac
tcaaaCGATTACCGAGTCTtcgaagggttgttaagaaagtgatcgaagac
tcatcacaatttttttgaaattttgatacttGAAATTTGATTATTAATCG
ATAAATGGTTGTTCGATTACTTCGNtcacaatttttttgaaattttgata
cttgaaatttgattgttaaTCGACAAATGGTTGTTTGATTACTTCAATCA
TAATAATCGAATGtatcgattagtaccgtctggaatAGTCACTATCGAAG
GGAGTACAAAACACTTATTTGATTTATTCTCTTTGATTTAGTGGCTTACT
GGTCATGTGGCTTACCCTACCTAGAAATTTTGAAGGCTGAGTTCTCAATA
ATAGAAACAGTCAGAAATATACTTTCTTTTCAGCATTGCCAGCAAAGGGC
TAATTTTTCATTAGATGCACTGATTTGTGGCTTAGAGTTTGTTAAGTGGG
CAAAAATGTGGCTTACACAAGGGAAATATAGGTGAAAAGGTGAATTTAGG
TGAATATGTAGGTGAAATATCTGGAAATAAAGGTGAAATTTTATGTCTCA
tattttcagtgttttttcCAAGCACCCAAATGCCCCCGTTAGACGGTGGC
attaaactcaattcaaattgagttcattgataaattctataattttaacc
gttttaaagtGCTAGTTAATGGTTAAGACAAAAATAGGCTCAGCTTTCTG
TGAACCCCCCACCAGGGCTAGCCCTGGACCCACCGGGGGCTcgagggccc
cccccccccgggggggggggcccccccccccgggggggggggcccccccc
cccgggggggggggcccccccccccgggggggggggggggcgtggCCCCC
CCCGTGGGTCCAGGGCTAGCCCTGGACCCACAGGGGGCTCAAGGCGCCCC
CAGCCTCTGATATCGCGGCTTACGCCTTTgttaaaaactcaatttgaaag
taCAAACGGAGGCATTGCTTGGTGCTTCATTAAAGTATAACACCAGTAGg
tgtaaaaaattacaaaaaatttgttgtaaaagtacaattttgtggcttac
aaagtcacattaaaaattatcgaaaagtaagccacaaaaaaactacattt
taaaacagctagaaagtatgtacatttaacatctttttaaaaattcaacc
tttcctctGTCAAATTAAGAAAGTCCCATTCTAAGATGGCTTATCTAATT
TGTGTGGCTTACATTACTAAAAAAGATACGAATTTTGAGTTGAAGCCACA
TTTTTAGCCcaattaacaaagaaaaaaactttattcaTAATGTCTTAGTA
TTTCCCACAacattgtaaaatttcaagacTTATCGATTAAGACTTCATCA
GCTAtgacaaaaagttgtttttgggcatttttcaaaatgtcacactattt
ttgattggGATCAGCTATAGAAGACTTACGTCGCATTAGATTCCCAAACT
TCTCAAAGGGATTTGAGCCAAGGCCCTCAGTTAGAGATTGTGTTATGCTT
TTCTAGATCTCTAGACACAGGTGTCTTAGTCGAGCAAGATAATTCCTATG
TGGAAAAGGTTAATTTTCAAATCTTGTATTTTGCTAACATaacattaaaa
aaacaattgCACAGGAGTAGCCCTCTTCTCTTACTCTTACCTTAATAAGG
TAATTAACTTTGGCTAGAACTAATTTTGGTCTGgagcaaaaatcataaaa
ttcatGAATTGAGGAACTTACTTTGGGAAGGGagaatttaacttttttgc
ccaaaaatgaGTGTTTTCATCGTTTTATCTCTAGGTCATGGAGGTGTCAA
TCAACTTGGTGGTGCCTTTGTCAACGGAAGACCTTTACCAGAGCGCATTC
GGAAGAAGATAGTGGACCTTGCTCATCAAGGAGTTCGCCCTTGTGATATA
TCGAGACAATTACGCGTTTCTCATGGTTGTGTAAGTAAAATACTCGGACG
TTATTACGAGACAGGTTCTATAAGACCTGGAGTTATTGGAGGAAGTAAAC
CCAAAGTTGCCACACCCTCAGTCGTTCAAAAGATATCAGAATATAAACTG
AATAACCCTTCAATGTTTGCATGGGAAATTCGAGAAAAGTTATTGAGTGA
CCTGATATGTGACAATGAAACTGTTCCCAGTGTAAGCTCTATAAACCGTA
TAGTTCGAAACAGGCTTGCTTCAGGTAGTCTTTCCAAAGAACCAACAGAA
GAGGAGATAGACACATCAACCAACGAAATCATCAAAGAAGAAGAACCCAC
TAATGAGAATCCTGTTTTTCAAGGTGCAATCCCGATTCCTATCGGAGCTT
TACCGGCAAATCTGAACTCGTTGAATAAGTTACCACACACACCATACTCC
GTGAATGGGATCCTCGGGATAGCTGTTCAACAACCAAACGGAACTGTCAT
TATGTGTCCACCTGAATATTTTGCAGCACACCAAGTTCAAGGGGCCACTG
ACTTGTCACCCACTGAACATACCAATGGAATGGCAATCCAAGTGGTGAAC
GAAGCTGAAGATTCTCACACTATGGCTGACACACCTAATTTAGCTGCTGC
ACAATGTGattttttagtttaatttttcgattttttctctTTCGAACCcc
ttgaaaactatcaaaagGCAGCCTACCTAGATTACTATTGGAGAGCTCCA
TGGAAGTGTCAACCTCTACGGAATCTGTCTTtctttcattacttttgata
gaaacatccatttaaaattaaatttggtgaCAAGTTTAGCACTTTATTCT
GCCAAATGccaaatatttttcttgatgttcaaaaatattaaatatgaaaa
aatggTAAAAGACAAAACTGACGGATTTACCCAACAATATTGTGAGGGCA
TTGCTGTTAAAAATGGTTGTCTTTTGGTCATGAAGTTTAAAAATCGCACG
TAAGGCcataattttggaaattataATGAACATGACATATCGACTCTTTA
TCTGTTGATCTTAAAGTAGACTGATTTTCTGTCAAATTCTTACATCATGA
TAGGAATTGTTCAAGAATAACTTCAGGGTTGTGTAAAACTTCTTGATTTT
ATCAGCcttaatcttcaaaattttcagacttaATACCGATCGGGTCAACG
GAGGACAATCAGAACTTGGTGCAAATCAACTACCCTCCATCATTACCTTC
TCTCGAAGCAGAAACTGTTGAGAAAGAACATCCCCTACCACAACCTCCGT
CTTCACTTGTCGAAGACGTTTCCATTCCTCCAACCAAACTACACATCAAT
ACAACCAGCATTGAGAATAAACTGAAGGAGAACATTGATAACAGTATCTC
AGCCTCCAATAAAATCTTGATGAAGACAACACTGAACATCAACACAGACT
CTCAAGAAGAGGAACCATTGCGTGTCCACCAATCACCTTCACCCACCACT
AAATACATCTACACCAACCCATCACACCAAGAAGAGGAGAACTACGAAGC
AAGACATCCACTGCAAATCCAACCAGCTTTCTTTCCCAACAGTCCTCAAA
CATCCCCGGTCTCTAAGCATTTCCTCGAACACGACCGCAAACCAGGTCGA
CGTTTAAGGACGTCTTTTTCCACCGAACAAAAACAAGCGTTAGAAGTGGC
CTTCAAGAAAACACCGTACCCTGACGCCATCCAACGAGAACAACTGGCCA
CCAAAAATCAAATTCCGGAAGCCAGAGTACAGGTTGGTTAGGTTTTGTGT
TTTTTAAGTGGAGTATCTCAATAAATAtagaaatagttttgaaaatacGT
TGAATGATTCGATCTTCTAATCAAAAGGATTGTAATCGAATGAAATTCCA
AGCCTTTCAAACAAACAATCTTTCCTTAATCCTACAATAGAATAACAAAT
AAAATTATCTTCGTTTTTAAGGTTTGGTTTTCGAATAAAAGAGCCAAGCA
TCGGCGGCTGGACAAAAACTTCGACTTGCTGAAACCATCTAAGAGAAGAA
ATTCCAAAAGCATCGAATCTCCATTATCTCCACCATATCATCCACACATG
ACACCAACATACGTTCCTTTATCACAACAACATTCACAAATCTTTCATCC
ATCTCTTATCCCCATCATACCAGCAGCAGGCCAACAAATCGCTCTCATTT
CGCCATCACATCTTTATAACAGTGTCCCTCCATCGTCGAAGGAATCTGTT
GAAGAACATTCGAAGAAAACGAACGAGCCAACGCCAGTAGCAACAGCCAA
TGAACATTCCCCTAAAAATATAACATACATTACTGCACCTACATTGAATT
CTGAACAGCCAACAATGATACCGATTGGGGCGGTTCACCACCGCACACAC
ACGGAAGAAGCGATGGAAGAAATGCCGCAAAGTAAGCCACCACACAACCA
ACAGTTGGTATATTACGTCATCCAACCTGCACTCACTGAGAATCCGCCTC
TTTACGGATCTCCTTACCATCGTCTCTGTCCTCCTTCTCCTTCCAACGAA
TATGAACATGAAAGTCGAACGTTCAAAGATGAGGAGGTTTCTGATGTTGT
CCAAATAAGAGAACAAAAAACTTCTTATACTTCTCTTAGAGATCTCGTTG
GCACTTAGATATATCACTAACATTGGTGCTTTTTCAATGAATCAGCTAAA
TTTCATAGAAGTCTAACGTCAGTCTATTCTGAGAGAAATTTCTTAGATTG
AAAGTCTTAAATGTTCTTAGATTTTGGGCTTTTTGTTCGTCTTAGACTTT
AGTGGGAAATAATTTTATGTCATAgtgtaaaaatgtttttctgtttAGTT
AGCCAGTTTGAAAGTCATTCGAAGTAACATTTTGTTGGTTTTCTGCTCCT
CAGGACCTGAACAGACTAATCTTGACACGACTGACGACTCACCATTGACA
ATAACAAATGCTAACTTACATTCTAACAACCTCACTAACAACACTGAAAC
TGAAGAATCCAAACATGTTCTTCCTTCCATGAAAGTTTTGACAAGATACA
ACGATCGTCACCATCCATCACTTTCTCATTCTTTCATCCCACCCGAAcaa
tggttgaaaaattcggCTGCTATCGCTCTTGGCGGTCGAGCTTCATGGTA
AGTAAACACCTTTTTACGAGCGATTCTTGCTTGCATTGAAGTATTCAAAC
ATTTAGAAAAGAAATGAGATCGTACACAATACTTTACAGAAACTAATTCG
GGAGGTTAGTTTTAACAACCAGCAAAAGTCCTACTTTAATCGGGTTAAAT
attgcgagattaaatttcgcgatcgaaaaaaatcgcaaaattttctggGT
TTAATTTCACAggtcagagttttgaaaaatttcgcgtggatttaatttcg
cgaataagcctgaaaacagATGAAAAATGTTTCGCTTCAAATGGAGACTT
TGAACTGGTTTCTCCGCCAAAATtgcgattttaaaaattttgcagtaaaa
aaaaattcgcgacatcgcgaaatttaatctcgcgaaagttaatccgatta
aagtagaaaatttgacgAGTGATTTTGCCTTTGATGAATATTTGGCTAAA
TTCCCcaaaatcattaaaatcaaaTCACTTAATAATAAACAACCTCTGTC
TGAAGGTGGGAGGGAAATATATGTTTGCGTCGTTTCTAAACCAGAAAAGC
GCAAAAGCCTTGAGATATCTAACGTTTcgaaggtttttgttttttggggG
TGTCAAGAAAGGGGAACAGACGTCTTTCTGCATTTCGAACTTATTGCTTG
TACGATCAGAAACATCAGGTGATATGCGATAAATTGATtggagttttatt
ttatttttttcaggacaTCTCCCTTGACACCGTCACCTCCTCCGTTACAT
GTTGTCTCATCTTCTGGACAATGATGATGATTTTCTGGGAAACTTTGCTG
TGCAAATATACCAATGCGGTGAAATCACCATCATTGTGACAATTAACGAT
TACTAACAACACAAATTAACTACTTTACAATAACATCATTTACATTTACA
TCTACTTGCTTGTTGGAATCTTTAAGAGTAGTAGGAGGTAACAGGGCACT
TTTTAAAGTTCTGAAATGAGTCCACTCAGCAGGTTGTCAATGACGTGTCT
AAGGATATTTTTGGCATAATAGGCTTTAGATATTAGATATTCGATTATAT
TTAgagattttgggaatttttaCGATTGTGATCGTGACGagagtaaaata
atttttgtaggCCCTGTTGGTACTTGTTCCCAAAGTGTACACAAGCATTT
ATTATCCGGCTTGGTATTCTGCCTGAAAaggtacaaaaagaaagagctag
agggctttttagaaataagatcataaatcttttttgaaaatcagagatcC
TCGAGCCTCCATAATAGTTAACTCCTTTGCGAACAAAGCTAGAGCattat
ttgttttttgaaaCAATGGAGGAGGGACAATTTTTTCTCTCCACCGGTCA
CTTTAGTCGGTTATctagtgtctataataattccttggTGTATTTTTAGG
AATATTTTGGTTCGTTTGTCTTTTGGGACTGGTGGACGGGTTCTTCACCA
AAGTTAAGTGCTGAGCGCTGATTATCTTCAAAAGTATATTCAGCATTCCA
CATTTCAACTCTTGTATTATTAAACCTATGAACTTCTACAAAACCAAACG
GTGTGACGTGACGACTGACGACTTTTCGTTATCGTCCCCTGAAATTAGTA
GATTTCATGTTCAATGTCCTTTTCATCATACGCAGAGTACAGAAtagaat
attttttattaatttttctagttttttttttggaattgtaAAAAATTATC
TATATGGatgttaaaatttcttttagagtcgagtttttatatataaatag
tataatttcgttatttttggtATGGACTTTTTATCCATAATTTTTTGGAG
CaaattttgggaatatttaaAATGGAATTAATCAATGaatttattctttc
aattttctt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010541	XLOC_010541	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000309	supercontig	sc0000309:152319..163277 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.53981e-05	0.0761668	4.39335e-08	0	4.59208e-10	0	0	0	0	0	0	0	0	0	0	2.68523e-06	0	2.17152e-10	0	0	0	0	0.511789	0	0

Blast

[Close]

BLAST of TCONS_00018815 vs. Swiss-Prot (Human)
Match: PAX8 (Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.581e-25
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 3

Query:  285 SQKSGHGGVNQLGGAFVNGRPLPERIRKKIVDLAHQGVRPCDISRQLRVSHGCVQSRFLSELY 473
            S +SGHGG+NQLGGAFVNGRPLPE +R++IVDLAHQGVRPCDISRQLRVSHGCV S+ L   Y
Sbjct:    5 SIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCV-SKILGRYY 66

The following BLAST results are available for this feature:

BLAST of TCONS_00018815 vs. Swiss-Prot (Human)

BLAST of TCONS_00018815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PAX8	4.581e-25	79.37	Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 P...	[more]

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TCONS_00018815 (transcript) - C. hemisphaerica