TCONS_00018810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018810
Unique NameTCONS_00018810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018810 ID=TCONS_00018810|Name=TCONS_00018810|organism=Clytia hemisphaerica|type=transcript|length=2116bp
CGGAAATTGACTAAGAGGCGCCAaacatgcaaaaaataaaaattccgcTT
CGAAACGCTCACTTTAATTACTTTTTTGATCATCAACATTTGCATTGAAA
TGAAAAGTTCAAAGAAAGAGTTTATGACACGACAAACCACAAATTAAGAC
AAGAGAAAACCAACTGCaacaaccagaacataaaaCTAGAGAGTTGCAAC
TACAGATAGAGAGGTGTATACGTTATGCGATGGATTATGAGGATGAAGCT
GAAATATTTACTTTTAATCATTGTATTGACATTTTTAAGTCTCCTGACCG
TCCTTCAGTTGCTTCATGGTGGTGAAGACCAGGTAGAGTTTCTGGATGAA
GGTGAAGGTCATGGTGAAGAAGAAGAACATGGAGGAGGGTCAAATCATAT
TCCTGATTACATTTTAGAAGAAGAAGCTCTACCACCTGCTGATACATTGG
AAGAACTTGATAATGGTAATTGGCACGATTTCGCCGTAGATCGAGTTCGA
AGGCCGGTTATCGGAGCCAAAGAACAAGCAGAAAAAGAGGACCTTCCATT
CATCGTTTGGTGGACCCCGTTCACCGGCGAAACGGGCAGAATCAAAAAGT
GCTTCGTCGGAGACTGTTATTTTAGCCAGGATAGAGAATTGATGACACAT
CCCAAAACTAAAGCCTTCCTCTTCTACGGAACCGACTTTTCAGTCAAGGA
TTTACCACTCCCAAAGAAAAGACACCACGAATGGGGTTTGACGCACGAAG
AGTCTCCCAAAAACAACGCCATCTTTTACCACGAGCAGGGGATGAATGTC
TTTAATCACACTTGTACTTTCAAGCAACAATCATCATATCCCATATCAAC
ACAATATATCAGATCTATGAAATACCTGCTGAAACCGCTCACTTATACTA
CAGCTGAACGCGAAGAGTTCAAGAGGAGTGAAGGTTTGGCGGCTGTGGCG
TACGTTCAGAGTGGGTGTAACCCGCCCTCCGATAGAGACGCTTATGTGAA
AGAGCTCATGAAATACATCAAAATTGATTCTTATGgcaaatgccttcaca
ataaaGACTTACCTAAAGTATTGTTAGATCCTCTAACTATGTTTGATAAA
GCATATCTaaagtttttcgaaaaatataaatttatcatttcatttgaaaa
tgcGAGATGTAATGATTATATGACGGAGAAAATCTTCCGTACTATTCATA
TGGGTTCAGTTCCCATTTATTTGGGAGCTTCAAATTTGCGAGAATGGCTT
CCTGATCCAAAGTCAGTCATAATGGTGGAGGATTTCAAATCACCCAAAGA
CCTTGCTGAACATATCAAATATTTAGAcgaaaattcttcagaatatGAAA
AATTGTTAGAGTATAAAACGAAGGGAAATGATAATAAAAAACTAGAGAAA
GTACTCGAGGAGCGGCAATGGGGAGTGGATACCGGTCGTAAAATGAATAT
GGTTACCGGATTCGAATGTCACGTTTGCGATCAAATACATCGGAATCGGA
ATCGCCAAAAAGCCGGTCAACCCATCCTTCAATACCGGGCTACATTGGAA
CATTATGGTTGTCCAAAACCAACTCAATTTCCGTTTCCCGACGTTCCGGG
ATCACAGGACTGGGAACGAAAGAATTGGCTTTGGGATTATGACGGGGGTA
AAGAACAAGCGCTTAAAATGAAACGAAAAATGGGGAGCTGATAACAATTA
TGACAATTACATAggTTGGCAAATTAATTCACcaaatcatggaggtataa
agaaaaacaagagttgaatgtgtcggtaattggtcgttaatgAATGTCTT
tggatttcttttataaactgtatcaaaagaaattctaagctcgcccgatg
aaataagattCTTTAGTAGAACCCAAGATTGCTCTGAACATCAGTATTGA
AGATATTAGCCTtcgttgttttgaaaagatattttctcaagcctgAAAAT
TAagagttctttataagcacacatatttcagactcaatttgtagacataa
agtcactggagaattttggaggaaagtatcaagcaatagagttcacctta
aagaaaacattgatcgaaaaatcttgtcatttgatgaaggattgccaagt
ttacaggccttttttt
Run BLAST on NCBI

protein sequence of TCONS_00018810-protein

>TCONS_00018810-protein ID=TCONS_00018810-protein|Name=TCONS_00018810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MRWIMRMKLKYLLLIIVLTFLSLLTVLQLLHGGEDQVEFLDEGEGHGEEE
EHGGGSNHIPDYILEEEALPPADTLEELDNGNWHDFAVDRVRRPVIGAKE
QAEKEDLPFIVWWTPFTGETGRIKKCFVGDCYFSQDRELMTHPKTKAFLF
YGTDFSVKDLPLPKKRHHEWGLTHEESPKNNAIFYHEQGMNVFNHTCTFK
QQSSYPISTQYIRSMKYLLKPLTYTTAEREEFKRSEGLAAVAYVQSGCNP
PSDRDAYVKELMKYIKIDSYGKCLHNKDLPKVLLDPLTMFDKAYLKFFEK
YKFIISFENARCNDYMTEKIFRTIHMGSVPIYLGASNLREWLPDPKSVIM
VEDFKSPKDLAEHIKYLDENSSEYEKLLEYKTKGNDNKKLEKVLEERQWG
VDTGRKMNMVTGFECHVCDQIHRNRNRQKAGQPILQYRATLEHYGCPKPT
QFPFPDVPGSQDWERKNWLWDYDGGKEQALKMKRKMGS
Run BLAST on NCBI

transcript from alignment at sc0000309:103425..112499+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018810 ID=TCONS_00018810|Name=TCONS_00018810|organism=Clytia hemisphaerica|type=transcript|length=9075bp|location=Sequence derived from alignment at sc0000309:103425..112499+ (Clytia hemisphaerica)
CGGAAATTGACTAAGAGGCGCCAaacatgcaaaaaataaaaattccgcTT
CGAAACGCTCACTTTAATTACTTTTTTGATCATCAACATTTGCATTGAAA
TGAAAAGTTCAAAGAAAGAGTTTATGACACGACAAACCACAAATTAAGAC
AAGAGAAAACCAACTGCaacaaccagaacataaaaCTAGAGAGTTGCAAC
TACAGATAGAGAGGTAAACTTAACTTAACTAGCTTGTAGCTACCAAGTTT
TTTTCTCCAATCACCAAATGTCCACAAAAGCTTGGGAAATACTGTGATAG
GTACTGTGTTACTGtgtctagcctgggaatccaagtgttaaacttttttc
acagtctagtttatgatatttttgctgctggtttaacgcttggtgcaggt
aactcgcctgcagggagatttttccctgcaatgcaggttcggcctgattg
gccagctttcggcgtattacttagcagtactttttcgcgcgcattttgat
tatttcgatgcgcgcgcataatttatggaaaaagctgactctgcagaaaa
aaggaaaacaaatgaaaatgaaaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaagttgattatgtgtgtttgcctgggtttccaa
agttcagaaactctgtcaacaagggttcacacacagactgtttataacat
tcagtgtcagactaatctacctgcaccaagctctataattttagaacttt
gtgaggtgaggtattttttgttttttctaaaattatgagcttggattctc
AGGCTATACTGTGTCATGTATGCTTCCATTTCAAGAAATGAGGCGCGAGT
CATGGCTGACACAagcaatcaacaaaagaaactaATAAAAGATCAAAGAG
CCGTAGTACTAGTAGCCGTAAGTGGGCAAAAGGATTATGATTGTTCAAAC
TCAAAATTAAGCTAGCAGAGCCAGGTTTCATGGAGCTTTTTTCCAGACGT
TACTAATCGATAAAATCGATTATCGAATAGAATTGATAGCTAATCGACAA
TTAAGCGATTGATTAAATATCAATTAAAAACgataatcgatagctaatcg
atgCTCACAATTTTTTAGCACTCAATTTAATTATCACCATAGATTTTTAA
TCAATAataccagacccgatcaatagAACTTGTTGAACCAATCGagcaat
cgaactaatcgaactccatcgaacaattaaaattcaattaaaaaaattaa
tcgaactctaagattttttaaaagattgtgagtgttcgattaagttcgat
caatgggtttcggttcgatcagttcgataaaccaattttgttcgacaagt
ttgtgctgctccgccaccgtatattagcttcttttcaaacccaaattcgg
aatgtagatcgggaaattacttctgATAACAGATTACACACGTTTCCTAT
ATCCTTTTAGTGCCAGATGCagtttgttggggcgtagtattccgccactc
ggccgtgcacgaaatcgcaacagaggggctacggactttattccggatag
acaaatatccaggtacaataaacgtcaagctgttaagtccgggaactgtc
gaaatagcaatcgcgtgccaggacaaagtttttgcaagcgagggaagata
taaggatttaatatcatcgaactaatcgaactttttactgactgaactaa
tcgaactgctattgcttcaaaaattgtgagtgttcgattaggttcgatta
attttttcaatcgaactttaatcgttcgatgaagttcgattaatttgatt
gttcgattggttcaacaAGTTCGATTAATCGGGTCTGGATAATATAAATT
ACAGTGTTAATAATTGATAATATTCATTAATATCAATATAATCGATACCT
CGATCCTATCGATTTTTAACCGATAATATCGATGAAACTTGGATCAATAT
CTAATTGATATATATAATCGATATCTTAGATCTGATCGATATAAAtgata
ctcacaattttttaggcgcggattagttatcgattattgtttttaatcga
tacttaATCAATCGATTAATTATCAATTAGCTATCAATTTTAATTGATAA
TAGATTTTATCGATTAGTAACGTCTGGGCTTTTTTATAGATGTTTTGGTG
AACGCGAatgtttttttgaataactaattactccacatacattactttcc
ctcagccaataaaagcatgataaattatcttgtctcttggtaactgctgt
ggagtaattagttattcaaaagaccatCACGTTTGCCAAAACAACTACCA
TGAAGTCGGGTAATTTGCATCAGGAGAGGggaacttgcatagccatcaaa
tgactggccgatcaaagcagcaaaacttaaaaacaaatgAATTACGCAGC
Tttgcttgcagctctactctaccgtttttgttttgatttaactttgtatt
ttaatgaccagccataggtcattcatttgagggctatgcatgttagcctc
cactgatgcaagttacccaatctcacggtatggTATGGTGAATATATATG
GAAGACTCCCTGGATTGGcgaagatgaagaaaaagaagaaaaactaaaaa
ttcattCCCTAGAAAATATttagattgttttattttgttcaatcgCAAAC
ACTTCAGAAGACACCAAGTATTCTTTTATCCAATCACTGCGTtattaatt
gttttattttgtccaatcaaaaaattgccttgcaattgtttaaaaagaat
tatCCATGGCTATTCCGAAAGAATTGTACAGGGGtattaacaaacttttt
ttactAACCGCCCTGGAAATTTTAAATAACAAACAATTACCTGATGATTA
GGGATCGACGCGACACCCTTGGAAAGTAAAATTTTGTGGAAAAGGGCCTG
GCAAATGTATTGATGTCAGTTTATGATgagagaaccccctggaaaccttt
aataacccccttcaaaaatctaaaaaatgaacaaaaactgCTCCGCTGGA
ctcccctggaaaagttcgtcaatacccctgtatggtttaaaaatggaata
gcccaatcaaatcaaatgaaggtaaagtgctttcatccaatcagaaggga
ttctttgaaaaaataaagctCGCATCAAATTTTAGCTTTGTTTGAGAACG
AAacataagaaaaaattcaactCTTAGAATCAATGATTATTTGAATCAAA
TAAAGTTATATGTAGCGAGAATGGGTCTTCGGGCCTGATgttacttaaat
atatagatagatatgaCTGCTCGTCAGCCAAGGTGCCAAAAAGCCATTAG
AAGCAAAAATTAGGGCCGGTCATCATTAACTTTCGACATACCCGGCAATC
TCATTGGCTGAAATCATCCAAAGAATTTATGATGAAGCGACTTACGGAAG
CCACTGACAAAAAGGGTcacaccactttcgtttttattgCCGATTTCGCT
ATAAACATTGAATGGGGAATAAGACTTCTGTCAATGTGTATTATGTGTCG
ACTATGTAAGCATTGTGTATTGTTGGAATAGGACAGAGAAAAGAGGTAAG
TCTGACCTAGCCTAATTGTCAGCTGTCAGGGGGCGTTAAAAAGAATATGA
AAgcttatttatataaaaaacaaaacacacagTATTTCCCAAGCTGTCca
aaatgggctattccaaaaaaaaattacacagGGGTATTCTGGGGTATTGA
CTAGCCAAGGTTCTAAGCTAATAgtataattttgactttaaaaagatgta
taTTATTAGCTTAGTTGCAAACAAACTCGGTAAAAACACGTTTTGCCTTT
GTCAACGACTTTTTGTATTCCCAATCAAggtaattaaaatattttgtgat
cgataaagcaaaaataataacatctaCATTATTCccagtcaaaatatatt
gagaattttggttaactcctcgtttttagcaatttaaagttcgggtgaGA
AAGTTGTTTTGGCCTAAttgaaaaattcattcaaatatttcaattcggga
ggagtttatagacttccaggctatattctgagccttattggaccatacTT
GGACTTTTAGATCTTTAGATCCTAAtgttctaagtcttaagtctaacgtt
aaaactcagagttaaaactctacccttccaacctaatctAGAGCACTTCC
agatcgtttgtggttgtaagatttcgtggggatttcccttttttctcgaa
tattatgaccatgattgtagcattcgtttttttataaagcaATGAGTTTC
TTGGTATGCAACACCTGGCGTCAAGCACTTCAATAACTTCCAAAGCTTTG
TGAAAATTTATGGTTACTTGCAATTTTTTCACAACggctttaaaatattt
tacattacATGTATTTCctaattttgtcattatttattttatttatattt
tttatgccACGAGCTTTCAAAAGCTTGTTTTGTtgttaaaaaaagtttct
tcctaaacggttgtcaaacaatcaaaaggGGACATATTGCATAGAAAGAA
AAGGCAAGTAATTGCAGTGCTACACATCCTGAATCACTAAacagcatttt
tttttcaaaggtgataaattttatatattGTTTAAGGGTTGAAGGGAAGG
TTGGGGTGTGATACATAGTAATGGTAATTTATTTGACAGAAACAAAAGAG
CAAAAATTGAGCGTGTTGAAGTTAAACGGTGACTTGAGAATAAAATACTT
TGTAGAGTTTAAGGTTTATAAATTCTTGAAGTAAGAAGGCTAAGAGCTTA
GTCATATAAGATTTCATAGATATAGACCAATGTAGAATAATGTTGTCGAT
AAGaactttcatgaaaaaaaagaacttaAGGGCACTCATGTCAAACACTT
CTTTTTAGCCCTTTTTAGGATGAAATTCTGTAGACAGACTTATCGACTTA
TCTCTGCTAATGGTATGAATGACAGAAATGAAGGAATCTATTCAGGATAG
CCTATCCCAAAGATGAAATCATATCAACAGCAATAATTAGCGCGGTTGAT
TTTGATGACCTCATTAATGGACAATGTCATGAGTTACACAAGCATGCTCG
GCCCATAAGTAAAATAATAAGCACAAAAATTTCTATAGCCCGTTTAAAAG
AACTGCAAAATTTTCACTTAATCCGTGTCGAGGAGCACTTTCAGTTGCCT
GCTGATGTTAGTTTATTGTGACTTTGTTTTTCTGTAAAATTTGGTCCaag
cttcttcatttttcagaaGACTCTTAAATGCCTACTTATGCACAGTCtca
ttaaatttttgaattgtaATATTGATAAAACTCATAAAAGAAGCCATAAA
ACATTTAAACATTTCGCATAATATTTTCTATTATTTATCAATATATGCTT
TTTAGCCTGTATAAAAGTTCATCAAATGAATACATAATGTTTTCAACTTg
actaaaaaattttttctttctttgttcaGGTGTATACGTTATGCGATGGA
TTATGAGGATGAAGCTGAAATATTTACTTTTAATCATTGTATTGACATTT
TTAAGTCTCCTGACCGTCCTTCAGTTGCTTCATGGTGGTGAAGACCAGGT
AGAGTTTCTGGATGAAGGTGAAGGTCATGGTGAAGAAGAAGAACATGGAG
GAGGGTCAAATCATATTCCTGATTACATTTTAGAAGAAGAAGCTCTACCA
CCTGCTGATACATTGGAAGAACTTGATAGTAAGTAATGTAAAATTTTGCG
TGATTATTTTAttcaatgggctcttccagaaaatttttgtacaagggggg
agggatggaggatatattggatattttgtctgGGGGAGGGGGTTAGGGGC
AAACTTGCTctgattaggggtgattttgaatgtccgggggtcaactgatg
cttgtccaagGGGTGAGATTTGTTATCAGGCTGGTCAAAATTCATAATGT
ACGGGGCTACATTTCCAAAagatgttatatcctccaccccccccccccaa
NATATGATATTGACGCTCGCCCTTATTCGATTTTCAGGGTTATCGGGTTT
ACattgaataatgaataatgttTACACACTCCCTGTGTTTCGAATAGAAg
agtgtcgtttatgagagtttcttgtagACTGTGACTTTTAATAGTATCAA
ATAACGGAGTGTATCAAAAAGTTAAACTTCGAATTAGGGAGCGTTTACTG
CATACAGTTTTTATTTTCCCTTCCAGATGGTAATTGGCACGATTTCGCCG
TAGATCGAGTTCGAAGGCCGGTTATCGGAGCCAAAGAACAAGCAGAAAAA
GAGGACCTTCCATTCATCGTTTGGTGGACCCCGTTCACCGGCGAAACGGG
CAGAATCAAAAAGTGCTTCGTCGGAGACTGTTATTTTAGCCAGGATAGAG
AATTGATGACACATCCCAAAACTAAAGCCTTCCTCTTCTACGGAACCGAC
TTTTCAGTCAAGGATTTACCACTCCCAAAGAAAAGtatgagtgttttttt
ttctcattttttatagTGAAATATTTCTCTTCTTTATCAGCtcattaaag
attttgtttttaaaagttaagagtgatatcgtttggttactcatcaattt
taattcacacttttacacattggattgacacgagTGTGGAGCAAGATGCT
ATGAGGCTATGCCCCcagcccccccaataattttttcaaaaatgattaat
ttgcaaaattcaaagtttttcttttttaatttgtcataattgtcacaatt
gagtgcattttcaagcaatcttgagctcaaattttcaaaatccccccccc
cctccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNaaaaacccccccccccctcgggccaaaccatggttggccct
cgcggtgtcactaaacttcagcccccccccctaatatggaaatgcttcct
acggcactgaaaagtgatatttttgttaattttttcagGACACCACGAAT
GGGGTTTGACGCACGAAGAGTCTCCCAAAAACAACGCCATCTTTTACCAC
GAGCAGGGGATGAATGTCTTTAATCACACTTGTACTTTCAAGCAACAATC
ATCATATCCCATATCAACACAATATATCAGATCTATGAAATACCTGCTGA
AACCGCTCACTTATACTACAGCTGAACGCGAAGAGTTCAAGAGGAGTGAA
GGTTTGGCGGCTGTGGCGTACGTTCAGAGTGGGTGTAACCCGCCCTCCGA
TAGAGACGCTTATGTGAAAGAGCTCATGAAATACATCAAAATTGATTCTT
ATGgcaaatgccttcacaataaaGACTTACCTAAAGTATTGTTAGATCCT
CTAACTATGTTTGATAAAGCATATCTaaagtttttcgaaaaatataaatt
tatcatttcatttgaaaatgcGAGATGTAATGATTATATGACGGAGAAAA
TCTTCCGTACTATTCATATGGGTTCAGTTCCCATTTATTTGGGAGCTTCA
AATTTGCGAGAATGGCTTCCTGATCCAAAGTCAGTCATAATGGTGGAGGA
TTTCAAATCACCCAAAGACCTTGCTGAACATATCAAATATTTAGAcgaaa
attcttcagaatatGAAAAATTGTTAGAGTATAAAACGAAGGGAAATGAT
AATAAAAAACTAGAGAAAGTACTCGAGGAGCGGCAATGGGGAGTGGATAC
CGGTCGTAAAATGAATATGGTTACCGGATTCGAATGTCACGTTTGCGATC
AAATACATCGGAATCGGAATCGCCAAAAAGCCGGTCAACCCATCCTTCAA
TACCGGGCTACATTGGAACATTATGGTTGTCCAAAACCAACTCAATTTCC
GTTTCCCGACGTTCCGGGATCACAGGACTGGGAACGAAAGAATTGGCTTT
GGGATTATGACGGGGGTAAAGAACAAGCGCTTAAAATGAAACGAAAAATG
GGGAGCTGATAACAATTATGACAATTACATAgggtataaattattttttt
aagaatttttttgggaataatgctttttatataattttagaTAACTTTTC
ACCAACTTTATATATTTAGGTAATGATTTGTACATCGGTAGGTCACGTTT
TTGGGTATTTAATATAATCGACATCTCACACAGTAATATTAAAGCTCTAA
TCTTGTGGTTTTCTTACTATTTAGTTGGCAAATTAATTCACcaaatcatg
gaggtataaagaaaaacaagagttgaatgtgtcggtaattggtcgttaat
gAATGTCTTtggatttcttttataaactgtatcaaaagaaattctaagct
cgcccgatgaaataagattCTTTAGTAGAACCCAAGATTGCTCTGAACAT
CAGTATTGAAGATATTAGCCTtcgttgttttgaaaagatattttctcaag
cctgAAAATTAagagttctttataagcacacatatttcagactcaatttg
tagacataaagtcactggagaattttggaggaaagtatcaagcaatagag
ttcaccttaaagaaaacattgatcgaaaaatcttgtcatttgatgaagga
ttgccaagtttacaggccttttttt

Coding sequence (CDS) from alignment at sc0000309:103425..112499+

>TCONS_00018810 ID=TCONS_00018810|Name=TCONS_00018810|organism=Clytia hemisphaerica|type=CDS|length=4401bp|location=Sequence derived from alignment at sc0000309:103425..112499+ (Clytia hemisphaerica)
ATGCGATGGATTATGAGGATGAAGCTGAAATATTTACTTTTAATCATTGT
ATTGACATTTTTAAGTCTCCTGACCGTCCTTCAGTTGCTTCATGGTGGTG
AAGACCAGGTAGAGTTTCTGGATGAAGGTGAAGGTCATGGTGAAGAAGAA
GAACATGGAGGAGGGTCAAATCATATTCCTGATTACATTTTAGAAGAAGA
AGCTCTACCACCTGCTGATACATTGGAAGAACTTGATAATGGTAATTGGC
ACGATTTCGCCGTAGATCGAGTTCGAAGGCCGGTTATCGGAGCCAAAGAA
CAAGCAGAAAAAGAGGACCTTCCATTCATCGTTTGGTGGACCCCGTTCAC
CGGCGAAACGGGCAGAATCAAAAAGTGCTTCGTCGGAGACTGTTATTTTA
GCCAGGATAGAGAATTGATGACACATCCCAAAACTAAAGCCTTCCTCTTC
TACGGAACCGACTTTTCAGTCAAGGATTTACCACTCCCAAAGAAAAGACA
CCACGAATGGGGTTTGACGCACGAAGAGTCTCCCAAAAACAACGCCATCT
TTTACCACGAGCAGGGGATGAATGTCTTTAATCACACTTGTACTTTCAAG
CAACAATCATCATATCCCATATCAACACAATATATCAGATCTATGAAATA
CCTGCTGAAACCGCTCACTTATACTACAGCTGAACGCGAAGAGTTCAAGA
GGAGTGAAGGTTTGGCGGCTGTGGCGTACGTTCAGAGTGGGTGTAACCCG
CCCTCCGATAGAGACGCTTATGTGAAAGAGCTCATGAAATACATCAAAAT
TGATTCTTATGgcaaatgccttcacaataaaGACTTACCTAAAGTATTGT
TAGATCCTCTAACTATGTTTGATAAAGCATATCTaaagtttttcgaaaaa
tataaatttatcatttcatttgaaaatgcGAGATGTAATGATTATATGAC
GGAGAAAATCTTCCGTACTATTCATATGGGTTCAGTTCCCATTTATTTGG
GAGCTTCAAATTTGCGAGAATGGCTTCCTGATCCAAAGTCAGTCATAATG
GTGGAGGATTTCAAATCACCCAAAGACCTTGCTGAACATATCAAATATTT
AGAcgaaaattcttcagaatatGAAAAATTGTTAGAGTATAAAACGAAGG
GAAATGATAATAAAAAACTAGAGAAAGTACTCGAGGAGCGGCAATGGGGA
GTGGATACCGGTCGTAAAATGAATATGGTTACCGGATTCGAATGTCACGT
TTGCGATCAAATACATCGGAATCGGAATCGCCAAAAAGCCGGTCAACCCA
TCCTTCAATACCGGGCTACATTGGAACATTATGGTTGTCCAAAACCAACT
CAATTTCCGTTTCCCGACGTTCCGGGATCACAGGACTGGGAACGAAAGAA
TTGGCTTTGGGATTATGACGGGGGTAAAGAACAAGCGCTTAAAATGAAAC
GAAAAATGGGGAGCTGAATGCGATGGATTATGAGGATGAAGCTGAAATAT
TTACTTTTAATCATTGTATTGACATTTTTAAGTCTCCTGACCGTCCTTCA
GTTGCTTCATGGTGGTGAAGACCAGGTAGAGTTTCTGGATGAAGGTGAAG
GTCATGGTGAAGAAGAAGAACATGGAGGAGGGTCAAATCATATTCCTGAT
TACATTTTAGAAGAAGAAGCTCTACCACCTGCTGATACATTGGAAGAACT
TGATAATGGTAATTGGCACGATTTCGCCGTAGATCGAGTTCGAAGGCCGG
TTATCGGAGCCAAAGAACAAGCAGAAAAAGAGGACCTTCCATTCATCGTT
TGGTGGACCCCGTTCACCGGCGAAACGGGCAGAATCAAAAAGTGCTTCGT
CGGAGACTGTTATTTTAGCCAGGATAGAGAATTGATGACACATCCCAAAA
CTAAAGCCTTCCTCTTCTACGGAACCGACTTTTCAGTCAAGGATTTACCA
CTCCCAAAGAAAAGACACCACGAATGGGGTTTGACGCACGAAGAGTCTCC
CAAAAACAACGCCATCTTTTACCACGAGCAGGGGATGAATGTCTTTAATC
ACACTTGTACTTTCAAGCAACAATCATCATATCCCATATCAACACAATAT
ATCAGATCTATGAAATACCTGCTGAAACCGCTCACTTATACTACAGCTGA
ACGCGAAGAGTTCAAGAGGAGTGAAGGTTTGGCGGCTGTGGCGTACGTTC
AGAGTGGGTGTAACCCGCCCTCCGATAGAGACGCTTATGTGAAAGAGCTC
ATGAAATACATCAAAATTGATTCTTATGgcaaatgccttcacaataaaGA
CTTACCTAAAGTATTGTTAGATCCTCTAACTATGTTTGATAAAGCATATC
TaaagtttttcgaaaaatataaatttatcatttcatttgaaaatgcGAGA
TGTAATGATTATATGACGGAGAAAATCTTCCGTACTATTCATATGGGTTC
AGTTCCCATTTATTTGGGAGCTTCAAATTTGCGAGAATGGCTTCCTGATC
CAAAGTCAGTCATAATGGTGGAGGATTTCAAATCACCCAAAGACCTTGCT
GAACATATCAAATATTTAGAcgaaaattcttcagaatatGAAAAATTGTT
AGAGTATAAAACGAAGGGAAATGATAATAAAAAACTAGAGAAAGTACTCG
AGGAGCGGCAATGGGGAGTGGATACCGGTCGTAAAATGAATATGGTTACC
GGATTCGAATGTCACGTTTGCGATCAAATACATCGGAATCGGAATCGCCA
AAAAGCCGGTCAACCCATCCTTCAATACCGGGCTACATTGGAACATTATG
GTTGTCCAAAACCAACTCAATTTCCGTTTCCCGACGTTCCGGGATCACAG
GACTGGGAACGAAAGAATTGGCTTTGGGATTATGACGGGGGTAAAGAACA
AGCGCTTAAAATGAAACGAAAAATGGGGAGCTGAATGCGATGGATTATGA
GGATGAAGCTGAAATATTTACTTTTAATCATTGTATTGACATTTTTAAGT
CTCCTGACCGTCCTTCAGTTGCTTCATGGTGGTGAAGACCAGGTAGAGTT
TCTGGATGAAGGTGAAGGTCATGGTGAAGAAGAAGAACATGGAGGAGGGT
CAAATCATATTCCTGATTACATTTTAGAAGAAGAAGCTCTACCACCTGCT
GATACATTGGAAGAACTTGATAATGGTAATTGGCACGATTTCGCCGTAGA
TCGAGTTCGAAGGCCGGTTATCGGAGCCAAAGAACAAGCAGAAAAAGAGG
ACCTTCCATTCATCGTTTGGTGGACCCCGTTCACCGGCGAAACGGGCAGA
ATCAAAAAGTGCTTCGTCGGAGACTGTTATTTTAGCCAGGATAGAGAATT
GATGACACATCCCAAAACTAAAGCCTTCCTCTTCTACGGAACCGACTTTT
CAGTCAAGGATTTACCACTCCCAAAGAAAAGACACCACGAATGGGGTTTG
ACGCACGAAGAGTCTCCCAAAAACAACGCCATCTTTTACCACGAGCAGGG
GATGAATGTCTTTAATCACACTTGTACTTTCAAGCAACAATCATCATATC
CCATATCAACACAATATATCAGATCTATGAAATACCTGCTGAAACCGCTC
ACTTATACTACAGCTGAACGCGAAGAGTTCAAGAGGAGTGAAGGTTTGGC
GGCTGTGGCGTACGTTCAGAGTGGGTGTAACCCGCCCTCCGATAGAGACG
CTTATGTGAAAGAGCTCATGAAATACATCAAAATTGATTCTTATGgcaaa
tgccttcacaataaaGACTTACCTAAAGTATTGTTAGATCCTCTAACTAT
GTTTGATAAAGCATATCTaaagtttttcgaaaaatataaatttatcattt
catttgaaaatgcGAGATGTAATGATTATATGACGGAGAAAATCTTCCGT
ACTATTCATATGGGTTCAGTTCCCATTTATTTGGGAGCTTCAAATTTGCG
AGAATGGCTTCCTGATCCAAAGTCAGTCATAATGGTGGAGGATTTCAAAT
CACCCAAAGACCTTGCTGAACATATCAAATATTTAGAcgaaaattcttca
gaatatGAAAAATTGTTAGAGTATAAAACGAAGGGAAATGATAATAAAAA
ACTAGAGAAAGTACTCGAGGAGCGGCAATGGGGAGTGGATACCGGTCGTA
AAATGAATATGGTTACCGGATTCGAATGTCACGTTTGCGATCAAATACAT
CGGAATCGGAATCGCCAAAAAGCCGGTCAACCCATCCTTCAATACCGGGC
TACATTGGAACATTATGGTTGTCCAAAACCAACTCAATTTCCGTTTCCCG
ACGTTCCGGGATCACAGGACTGGGAACGAAAGAATTGGCTTTGGGATTAT
GACGGGGGTAAAGAACAAGCGCTTAAAATGAAACGAAAAATGGGGAGCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010539XLOC_010539Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018810-proteinTCONS_00018810-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018810-exon-sc0000309-1491911889:103425..103637TCONS_00018810-exon-sc0000309-1491911889:103425..103637Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1510915933:103425..103637TCONS_00018810-exon-sc0000309-1510915933:103425..103637Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1575043694:103425..103637TCONS_00018810-exon-sc0000309-1575043694:103425..103637Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1491911889:109054..109302TCONS_00018810-exon-sc0000309-1491911889:109054..109302Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1510915933:109054..109302TCONS_00018810-exon-sc0000309-1510915933:109054..109302Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1575043694:109054..109302TCONS_00018810-exon-sc0000309-1575043694:109054..109302Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1491911889:109801..110058TCONS_00018810-exon-sc0000309-1491911889:109801..110058Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1510915933:109801..110058TCONS_00018810-exon-sc0000309-1510915933:109801..110058Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1575043694:109801..110058TCONS_00018810-exon-sc0000309-1575043694:109801..110058Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1491911889:110913..111907TCONS_00018810-exon-sc0000309-1491911889:110913..111907Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1510915933:110913..111907TCONS_00018810-exon-sc0000309-1510915933:110913..111907Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1575043694:110913..111907TCONS_00018810-exon-sc0000309-1575043694:110913..111907Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1491911889:112099..112499TCONS_00018810-exon-sc0000309-1491911889:112099..112499Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1510915933:112099..112499TCONS_00018810-exon-sc0000309-1510915933:112099..112499Clytia hemisphaericaexon
TCONS_00018810-exon-sc0000309-1575043694:112099..112499TCONS_00018810-exon-sc0000309-1575043694:112099..112499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:103425..112499 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.5767	17.0258	5.36576	3.59629	8.48416	6.17264	6.72105	6.69522	5.17347	5.41783	5.22098	2.8449	6.84306	7.42082	7.81389	7.04728	12.7846	8.54583	3.26311	5.07576	6.14344	4.98048	13.3474	11.8357	7.81536	8.7626	10.5604	6.9192	10.4459	10.6888
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001503Glyco_trans_10
IPR031481Glyco_tran_10_N
Vocabulary: Molecular Function
TermDefinition
GO:0008417fucosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008417 fucosyltransferase activity
Blast
[Close]
BLAST of TCONS_00018810 vs. Swiss-Prot (Human)
Match: FUT10 (Alpha-(1,3)-fucosyltransferase 10 OS=Homo sapiens GN=FUT10 PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.101e-112
Identity = 167/389 (42.93%), Postives = 252/389 (64.78%), Query Frame = 3 
Query:  519 KEQAEKEDLPFIVWWTPFTGETGRIKKCFVGDCYFSQDRELMTHPKTKAFLFYGTDFSVKDLPLPKKRHHEWGLTHEESPKNNAIFYHEQGMNVFNHTCTFKQQSSYPISTQYIRSMKYLLKPLTYTTAEREEFKRSEGLAAVAYVQSGCNPPSDRDAYVKELMKYIKIDSYGKCLHNKDLPKVLLDPLTMFDKAYLKFFEKYKFIISFENARCNDYMTEKIFRTIHMGSVPIYLGASNLREWLPDPKSVIMVEDFKSPKDLAEHIKYLDENSSEYEKLLEYKTKGN-DNKKLEKVLEERQWGVDTGRKMNMVTGFECHVCDQIHRNRNRQKAGQPILQYRATLEHYGCPKPTQFPFPDV---PGSQDWERKNWLWDYDGGKEQALKMK 1673
            K + E +  P ++WW+P TGETGR+ +C    C+F+ +R  + H  TKAFLFYGTDF++  LPLP+K HH+W + HEESPKNN   +H+  + +FN+T TF + S  P++TQY+ S++ +LK L Y    + + K  + LA + YVQS C+PPSDRD+YV+ELM YI++DSYG+CL NKDLP+ L +P +M    + +   +YKFI++FENA C+DY+TEK +R + +G VP+Y G+ ++ +WLP  KS I+V +F  P++LA +I+ LD +   YE  +E+K KG   N++L   L ER+WGV    + N +  FEC VC ++  N   Q+ G P  ++ A   H  CP+PT F F  +   P S    R+ W+  ++  K++A  ++
Sbjct:   73 KRKWELDSYPIMLWWSPLTGETGRLGQCGADACFFTINRTYLHHHMTKAFLFYGTDFNIDSLPLPRKAHHDWAVFHEESPKNNYKLFHKPVITLFNYTATFSRHSHLPLTTQYLESIE-VLKSLRYLVPLQSKNKLRKRLAPLVYVQSDCDPPSDRDSYVRELMTYIEVDSYGECLRNKDLPQQLKNPASMDADGFYRIIAQYKFILAFENAVCDDYITEKFWRPLKLGVVPVYYGSPSITDWLPSNKSAILVSEFSHPRELASYIRRLDSDDRLYEAYVEWKLKGEISNQRLLTALRERKWGVQDVNQDNYIDAFECMVCTKVWANIRLQEKGLPPKRWEAEDTHLSCPEPTVFAFSPLRTPPLSS--LREMWISSFEQSKKEAQALR 458
The following BLAST results are available for this feature:
BLAST of TCONS_00018810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUT102.101e-11242.93Alpha-(1,3)-fucosyltransferase 10 OS=Homo sapiens ... [more]
back to top