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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018802 ID=TCONS_00018802|Name=TCONS_00018802|organism=Clytia hemisphaerica|type=transcript|length=1532bp
ctcCTGTGGTATATCAAGAAGCTAGCCTTGTGAGACCATCTGTTGACATG
GATACTGATACCATTGGCATTCAGCTTAGAGTCCCAAAGCTGGTCTGGTG
CGACCATCCATTGTCATGGAAAATTGCATCATTCGGCATTTAGTTTAGAG
GGGCTAGAGATTTCTCCCGGAGCGAAGCGTTGAGACCGAAAGCCTGAGAG
CCTATTCGTGTTCGCTTTTAACGCTAAACAAACGAGAGATTGTAAATAAA
AATCTACCACTAGATTCAAAAAAATGTGCCGCATGGAAACGAAGAAActt
gtttcactttttcttgcatgAGAATATTTAAGATTCCACTCTAgcctagc
ctagaaatctaagctagtttgattcaggaAAAATCTGGTGGAAAGTTGTG
ACTGCATAAACTAGTATTCCAatgcaaacttaaaatccataaatataaaa
aatctttaaagcgccgaaaacgctatattacCATAAGCCGTGtttcctag
ccttgtgaatacgggcttagttaactaggctaactctagcccttcggatc
GTTTATAATAAGATAAAAATATgacgaaaagttaagaaaatctgGAATAT
TCATCGGTAGCGCTTTCGTGTTTACATTCGCCACCATGATCCGTCGGTTC
CACAACAGCTATTTTGGGGTGCATCACCAACCTCAATCGTTTTCGCTTCA
AAACGAGACTagctttttttcgaaacattgggtgtttccaaaaatataac
aaTGGATTTACAATCGCGTTGATGCACCATACTAACCGGCCTGTCTGGAC
AATCTCATATTCCCAAGCTTTGATTAAAGCCCATTCTTCCGGATCAATAA
AGTCTTCCGTTATCAGAATAGACCGCATTACAACCATACCGGATGACGAG
AGAAATGTCATGGCAACCACCCAGTTAATGAGGGTCAACGCTTTTTGGTT
ACGCTTTAACGCCTTttgtttgatgacgtcattttgtgcGTCAACCCAAT
TCCGTTTCAAGATGTTTTGTGTTTTCCTCGAATACACATAAACGATCAAG
AAACACGCCGGTATACTTAAAATGACgatgaaattatttaaaaccCTATT
TAGACGTTTGGTAACAATGTAAAGGGCAGGTGCACACCATGGTACCACAA
AAAGTAGAACTTTCTTCAACTTGATTCGTCGGTGAAATTCGGTTTGTGAA
ATCTTGATAAAGCGGTAAAAAGATATACTGATCAGAGTGTATCCGGAGAT
AGCGATCAATCCAGTCAAATACCGAGCCAAATTTTGAATCAGATtgcttt
gaactttttgaatctCAGCAATAGTGAGAGGTGATAGAATAACACTTGTC
AACAAATCACCGATGGATAAGGAAATTAACAAGGAGTTGGAGAACGTCTG
GATTTCCTTGTAACGTATGAATAGATACAGGATGAAAATATTAGCCGGTG
CTCCACCTGCGATTGTTAAACTGTAGCCTGTGATCAATAGACTGTGAACT
GTTGACCGAGTAAATTCCATCTCTGATTTCTA Run BLAST on NCBI protein sequence of TCONS_00018802-protein >TCONS_00018802-protein ID=TCONS_00018802-protein|Name=TCONS_00018802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MEFTRSTVHSLLITGYSLTIAGGAPANIFILYLFIRYKEIQTFSNSLLIS
LSIGDLLTSVILSPLTIAEIQKVQSNLIQNLARYLTGLIAISGYTLISIS
FYRFIKISQTEFHRRIKLKKVLLFVVPWCAPALYIVTKRLNRVLNNFIVI
LSIPACFLIVYVYSRKTQNILKRNWVDAQNDVIKQKALKRNQKALTLINW
VVAMTFLSSSGMVVMRSILITEDFIDPEEWALIKAWEYEIVQTGRLVWCI
NAIVNPLLYFWKHPMFRKKASLVLKRKRLRLVMHPKIAVVEPTDHGGECK
HESATDEYSRFS Run BLAST on NCBI transcript from alignment at sc0000306:258592..260123 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018802 ID=TCONS_00018802|Name=TCONS_00018802|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at sc0000306:258592..260123 (Clytia hemisphaerica)
TAGAAATCAGAGATGGAATTTACTCGGTCAACAGTTCACAGTCTATTGAT
CACAGGCTACAGTTTAACAATCGCAGGTGGAGCACCGGCTAATATTTTCA
TCCTGTATCTATTCATACGTTACAAGGAAATCCAGACGTTCTCCAACTCC
TTGTTAATTTCCTTATCCATCGGTGATTTGTTGACAAGTGTTATTCTATC
ACCTCTCACTATTGCTGagattcaaaaagttcaaagcaATCTGATTCAAA
ATTTGGCTCGGTATTTGACTGGATTGATCGCTATCTCCGGATACACTCTG
ATCAGTATATCTTTTTACCGCTTTATCAAGATTTCACAAACCGAATTTCA
CCGACGAATCAAGTTGAAGAAAGTTCTACTTTTTGTGGTACCATGGTGTG
CACCTGCCCTTTACATTGTTACCAAACGTCTAAATAGggttttaaataat
ttcatcGTCATTTTAAGTATACCGGCGTGTTTCTTGATCGTTTATGTGTA
TTCGAGGAAAACACAAAACATCTTGAAACGGAATTGGGTTGACgcacaaa
atgacgtcatcaaacaaAAGGCGTTAAAGCGTAACCAAAAAGCGTTGACC
CTCATTAACTGGGTGGTTGCCATGACATTTCTCTCGTCATCCGGTATGGT
TGTAATGCGGTCTATTCTGATAACGGAAGACTTTATTGATCCGGAAGAAT
GGGCTTTAATCAAAGCTTGGGAATATGAGATTGTCCAGACAGGCCGGTTA
GTATGGTGCATCAACGCGATTGTAAATCCAttgttatatttttggaaaca
cccaatgtttcgaaaaaaagctAGTCTCGTTTTGAAGCGAAAACGATTGA
GGTTGGTGATGCACCCCAAAATAGCTGTTGTGGAACCGACGGATCATGGT
GGCGAATGTAAACACGAAAGCGCTACCGATGAATATTCcagattttctta
acttttcgtcATATTTTTATCTTATTATAAACgatccgaagggctagagt
tagcctagttaactaagcccgtattcacaaggctaggaaaCACGGCTTAT
Ggtaatatagcgttttcggcgctttaaagattttttatatttatggattt
taagtttgcatTGGAATACTAGTTTATGCAGTCACAACTTTCCACCAGAT
TTTtcctgaatcaaactagcttagatttctaggctaggcTAGAGTGGAAT
CTTAAATATTCTcatgcaagaaaaagtgaaacaagTTTCTTCGTTTCCAT
GCGGCACATTTTTTTGAATCTAGTGGTAGATTTTTATTTACAATCTCTCG
TTTGTTTAGCGTTAAAAGCGAACACGAATAGGCTCTCAGGCTTTCGGTCT
CAACGCTTCGCTCCGGGAGAAATCTCTAGCCCCTCTAAACTAAATGCCGA
ATGATGCAATTTTCCATGACAATGGATGGTCGCACCAGACCAGCTTTGGG
ACTCTAAGCTGAATGCCAATGGTATCAGTATCCATGTCAACAGATGGTCT
CACAAGGCTAGCTTCTTGATATACCACAGgag Coding sequence (CDS) from alignment at sc0000306:258592..260123 >TCONS_00018802 ID=TCONS_00018802|Name=TCONS_00018802|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at sc0000306:258592..260123 (Clytia hemisphaerica)
ATGGAATTTACTCGGTCAACAGTTCACAGTCTATTGATCACAGGCTACAG
TTTAACAATCGCAGGTGGAGCACCGGCTAATATTTTCATCCTGTATCTAT
TCATACGTTACAAGGAAATCCAGACGTTCTCCAACTCCTTGTTAATTTCC
TTATCCATCGGTGATTTGTTGACAAGTGTTATTCTATCACCTCTCACTAT
TGCTGagattcaaaaagttcaaagcaATCTGATTCAAAATTTGGCTCGGT
ATTTGACTGGATTGATCGCTATCTCCGGATACACTCTGATCAGTATATCT
TTTTACCGCTTTATCAAGATTTCACAAACCGAATTTCACCGACGAATCAA
GTTGAAGAAAGTTCTACTTTTTGTGGTACCATGGTGTGCACCTGCCCTTT
ACATTGTTACCAAACGTCTAAATAGggttttaaataatttcatcGTCATT
TTAAGTATACCGGCGTGTTTCTTGATCGTTTATGTGTATTCGAGGAAAAC
ACAAAACATCTTGAAACGGAATTGGGTTGACgcacaaaatgacgtcatca
aacaaAAGGCGTTAAAGCGTAACCAAAAAGCGTTGACCCTCATTAACTGG
GTGGTTGCCATGACATTTCTCTCGTCATCCGGTATGGTTGTAATGCGGTC
TATTCTGATAACGGAAGACTTTATTGATCCGGAAGAATGGGCTTTAATCA
AAGCTTGGGAATATGAGATTGTCCAGACAGGCCGGTTAGTATGGTGCATC
AACGCGATTGTAAATCCAttgttatatttttggaaacacccaatgtttcg
aaaaaaagctAGTCTCGTTTTGAAGCGAAAACGATTGAGGTTGGTGATGC
ACCCCAAAATAGCTGTTGTGGAACCGACGGATCATGGTGGCGAATGTAAA
CACGAAAGCGCTACCGATGAATATTCcagattttcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018802-exon-sc0000306-1491911889:258592..260123 | TCONS_00018802-exon-sc0000306-1491911889:258592..260123 | Clytia hemisphaerica | exon |
| TCONS_00018802-exon-sc0000306-1510915933:258592..260123 | TCONS_00018802-exon-sc0000306-1510915933:258592..260123 | Clytia hemisphaerica | exon |
| TCONS_00018802-exon-sc0000306-1575043694:258592..260123 | TCONS_00018802-exon-sc0000306-1575043694:258592..260123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000306 | supercontig | sc0000306:258592..260123 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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