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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018789 ID=TCONS_00018789|Name=TCONS_00018789|organism=Clytia hemisphaerica|type=transcript|length=5206bpRun BLAST on NCBI protein sequence of TCONS_00018789-protein >TCONS_00018789-protein ID=TCONS_00018789-protein|Name=TCONS_00018789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1007bp MTKTTVHMLTEDVELKPGNGKPDRKNVFFLTILAVALLLVFLFXPDRKNVRun BLAST on NCBI transcript from alignment at sc0000306:263293..293052+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018789 ID=TCONS_00018789|Name=TCONS_00018789|organism=Clytia hemisphaerica|type=transcript|length=29760bp|location=Sequence derived from alignment at sc0000306:263293..293052+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000306:263293..293052+ >TCONS_00018789 ID=TCONS_00018789|Name=TCONS_00018789|organism=Clytia hemisphaerica|type=CDS|length=63504bp|location=Sequence derived from alignment at sc0000306:263293..293052+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018789 vs. Swiss-Prot (Human)
Match: AMPE (Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3) HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0 Identity = 343/922 (37.20%), Postives = 506/922 (54.88%), Query Frame = 2
Query: 824 TTMAPTTVPK-----TPGTE----VYHNIRLPEYIRPIHYEIDLEINMEKDIVDGTTKIKTEVSKRTKYVMVHAMKFNNIEVVVKSFDSQETYPLERKHGSNGGFLYKPNLYFVIEAQDFFEV----GTYSLEFKFDYNLRKDLAGFYSSNYENEKGETRKVAATQFAPVDARSAFPCFDEPAMKATFDISMKRDKSYLALSNMPVIRTEADGDE--VTNYFKTTPIVSTYLIVFVICDFKSKMVVANTTVPTNMTYYAPSLQIDQVGYAMDVGSKVLPHLESYYNVSYPLPKADMIAIPSLSYRAMEHWGLITYRAIALLYDKHNSASSDKFLVSRIVAHELAHQWFGNIVTMDWWSDLWLNEGFASYIQFIGMDKVHPDWKALDFQLTRDVANAMDLDSLISSHPIYIEVERPEDIDQIFDAISYAKGGSILRMLDNFLGEEVFKKGLNIYLRRFSYKNAKSSDLWEALSEASKLAGDNYNVTDVMNSWIFQMNFPELRIKSLNNGQFKVDQVRFLRDQNPDYSKEKFNSSYGYKWYIPFKYNTLKLNDTAKSVEVINATTLAWMKYRNITVDTG--STDYLIKGNTRQYGFYRVNYDDAGWANMIKVLKYNHKVLDVKDRAGLISDVFALANAGRLKEYTTALDVFDYIDADTDYLPWKAASDGINFIPGTLTSTRPAQKKITKYILGKVSTLYEKYGFEDNNDFLERYLQVEIVNLACNNGHIGCLGNSTKLFKDWMEKDTPVPGDFRNLVYYYGIKNSGIE-AWDEMFEKFLNNKIASEKTKLLYGLAAIQEPWALERYLDYAISGRQIRPQDASYVFDYVANHNPIGRPVAWNFLKQNWDKIYKMF--KDTFFGRIVGSVTSRFTTNYELEKMREFIAEKKPE--NGQRIIEQSEETIKSTIEWLSKYEEPIDQWL 3523
+T +P+ P P +E + N RLP+++ P+HY++ ++ +E+D GT I +S T+Y+ +H + + S + + R F YK Y V+EA++ G Y L +F L L GFY + Y E G+ + + AT P DAR +FPCFDEP KAT+ IS+ K Y ALSNMPV + E+ D+ T + K+ P+ STYL+ F + F S ++N+ P +T Y Q YA ++ V + E Y+ ++Y LPK D IAIP AME+WGLITYR LLYD SASS++ V+ +VAHEL HQWFGNIVTMDWW DLWLNEGFAS+ +F+G++ DW+ D L DV + DSL+SSHPI + V P++I +FD ISY+KG SILRML++++ E F+KG +YL ++ +KNAK+SD W AL EAS+L V +VM++W QM +P L + NG + Q RFL D P + + S GY W IP K+ D S + N + + IT+++ S + +K N GFYRVNY+ A W ++ L NHK DRA LI D FALA A +L +Y AL++ Y+ + ++LPW+ + +I + I +Y G+V + + G+ D D + + L+ ++ AC G L N++ LF+ W+ +P + R LVY YG++NSG E +W+ E++ +A EK KLLYGLA+++ L RYLD I+ QD V Y++ +N G+ +AWN+++ NWD + + + GRIV ++ F T +L +M F A K P+ G++ EQ ET+K+ IEWL ++ I +W
Sbjct: 63 STASPSGPPAQDQDICPASEDESGQWKNFRLPDFVNPVHYDLHVKPLLEEDTYTGTVSISINLSAPTRYLWLHLRETRITRLPELKRPSGDQVQVRR------CFEYKKQEYVVVEAEEELTPSSGDGLYLLTMEFAGWLNGSLVGFYRTTY-TENGQVKSIVATDHEPTDARKSFPCFDEPNKKATYTISITHPKEYGALSNMPVAKEESVDDKWTRTTFEKSVPM-STYLVCFAVHQFDSVKRISNSGKP--LTIYVQPEQKHTAEYAANITKSVFDYFEEYFAMNYSLPKLDKIAIPDFGTGAMENWGLITYRETNLLYDPKESASSNQQRVATVVAHELVHQWFGNIVTMDWWEDLWLNEGFASFFEFLGVNHAETDWQMRDQMLLEDVLPVQEDDSLMSSHPIIVTVTTPDEITSVFDGISYSKGSSILRMLEDWIKPENFQKGCQMYLEKYQFKNAKTSDFWAALEEASRLP-----VKEVMDTWTRQMGYPVLNV----NGVKNITQKRFLLD--PRANPSQPPSDLGYTWNIPVKWT----EDNITSSVLFNRS-----EKEGITLNSSNPSGNAFLKINPDHIGFYRVNYEVATWDSIATALSLNHKTFSSADRASLIDDAFALARA-QLLDYKVALNLTKYLKREENFLPWQRVISAVTYIISMFEDDKELYPMIEEYFQGQVKPIADSLGWNDAGDHVTKLLRSSVLGFACKMGDREALNNASSLFEQWLNGTVSLPVNLRLLVYRYGMQNSGNEISWNYTLEQYQKTSLAQEKEKLLYGLASVKNVTLLSRYLDLLKDTNLIKTQDVFTVIRYIS-YNSYGKNMAWNWIQLNWDYLVNRYTLNNRNLGRIV-TIAEPFNTELQLWQMESFFA-KYPQAGAGEKPREQVLETVKNNIEWLKQHRNTIREWF 950 The following BLAST results are available for this feature:
BLAST of TCONS_00018789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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