TCONS_00018786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018786
Unique NameTCONS_00018786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018786 ID=TCONS_00018786|Name=TCONS_00018786|organism=Clytia hemisphaerica|type=transcript|length=1507bp
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT
GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT
GGCCGTTGCTAAGGCTTTAGAAGCCCATCCATTGGTTGAACGTGTTTATT
ACCCAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGC
ACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAAC
CGCTTCCAATTTCATGAAAGCATTAAAGGTGTTCACTTTGGCCGAAAGTT
TGGGAGGATTTGAGAGCTTAATCGAGCACCCCGCTATTATGACCCACGCT
TCAGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTTCTT
GAGAATGTCAGTTGGGCTAGAGGAAGCAGAAGACCTCGTCGCTGATATTG
AACAAGCTTTAGCTGCTGCCAACTCTGAAGATCCCCCAAGCAAACGACAA
AAGATTGCATAAACAAAACACGTACACACACTTATAATAAACAGAATTAA
TTTTGGGTGACGGTATGTAATTTTTTTGGTGTTGACGAAAAAAATGACtg
aattttatttataaaatggACATgtctaattttattttttagaaaaagaa
aaatctattttattttgttatttatatCAGCAATTaaaattcaaccaaaa
atattttaggtatttttcagttgatgatttgttttttatgaaagtaagtt
tgaaaaattcgGTTTCAggtttatgttttaaaatttgcTTTTTGAGGAAC
ATCTTTTATTATTGAAGGATTATTTTccctgttttttttatttctaaatt
cTCTTTTTCAATTTAGAAACCTTTCGCACTTAAGAACCATGATACTAATT
TTTAGGGATTtctagatttttaaaagaatagtaaaattgataaaaaattg
aaagataaaGATCTAATAGTGACattgcaaaaatttttcttttttctgtt
tgAAACCATCcccatttaaattttttttctgtttttaggtttgagatatt
ttaagCTTTTAGTCACCCAATACTCCAGTTTTTTACATAACAGCGAGGCT
CAAAAACGCTGAGAAATGAGAACAGTTAAAGAACAAAGCTGAGCCTGGAA
TTTCTTAATTTCAAGTGAgtcaaaaacgtaaaaatttgattgaaacCTAA
ATTGCCTCTATTTTGACCGAAAATAAAACAGTATTACGAGAATTTTGTGC
CGCAAGTGCCTCTGCAAAAATTTAGGCCTTTAAAAACAATTGTAGcattt
tttgatagtttttccNGCCGCAAGTGCCTCTGCAAAAATTTAGGCCTTTA
AAAACAATTGTAGCattttttggtagtttttccttTTAGTTTTCTTAGAT
CTTTATTGTTACgttgttctcattttttttaattgggccattccaataaa
tctccatacaggggggggggtggacgtATAGTATAGGTATGTGTGAATAC
CCtctgg
Run BLAST on NCBI

protein sequence of TCONS_00018786-protein

>TCONS_00018786-protein ID=TCONS_00018786-protein|Name=TCONS_00018786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
ACGVVPSPFDCYLANRGAKTLKVRMLQHQKNAMAVAKALEAHPLVERVYY
PGLKSHPAHELVKRQCTGFSGMVSMVIKGNLETASNFMKALKVFTLAESL
GGFESLIEHPAIMTHASVPEDQRTKLGITDTFLRMSVGLEEAEDLVADIE
QALAAANSEDPPSKRQKIA
Run BLAST on NCBI

transcript from alignment at sc0000306:250672..255312+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018786 ID=TCONS_00018786|Name=TCONS_00018786|organism=Clytia hemisphaerica|type=transcript|length=4641bp|location=Sequence derived from alignment at sc0000306:250672..255312+ (Clytia hemisphaerica)
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT GGCCGTTGCTAAGGCTTTAGAAGCCCATCCATTGGTTGAACGTGTTTATT ACCCAGGTTTGTAAAATTTATGCATTAAACATTTTTCTATTTCTGTAGAC CAATCATTACAAGCGATTTTAACAAATAAGATGGAACGTTCCAGCAAAAA GAACGATACTGAACGTTCTAAGATGTTCAGGTGCGTTAGAGGACGTCCTT GAACGGATCCCCAAATTGACGCTTCTTCCTGGAGGAAACTAGTTTTCGCG TTTTTTTGGTTTGAAGAAAAATCTAAACCTTCCAAATGTTAAAAGTTTTC TCGATCTTATTCAGAAATTTAGCGAGTCAGAATAAAAAATTCTCCATCTA GTACTAAATAAACTCTTGCACCGCAAAATAGGTTACGCGAAAAGaaattc cgcgaaaataagttgtTCCCTTATTAGTATAACAAAATGAATACCTTGCC TTTTCTTTAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACA ATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGG AAACCGCTTCCAATTTCATGAAAGCATTAAAGGTATGAAGAAAGGGTTAA ATAATCTCCAATCTCCAAaagatttatttatgatttacgAATCATTCTCA TTTTGTgctattttcaaagttttgagcTCCCCTAAAGGCCTATAATTTCA CGAAATGATATTTTACTATGAGTCTATCAAAATTTTCTAGATACAGTTTG GTTAGTAAATAGACTGATGAAACGCCATTGCGAACTTTCACTCGAtgaat cttttgaaaatagtttccTTTAGGAAATCGTTTGACCTTTGGTTTACTTT GATGGTATAAAATTTCGAAACTGCGAAATGTTATACCATTAAAGTATAAT ACATAGGGAATTTTTCAATCCTCCCATTTTTACGTAACGATTGAAATCCT CAAACATTTTCTAGTACAATTATATGGGTTTAGTGACTGTAGACCTTAAC CTTTTAgacttttttcaatattttgttcaCCTATATTTCAGGTGTTCACT TTGGCCGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCGTAAGT AAAGTGTCAATTTCTCCCAAGAATCACCTATCTTTAATTTTCACTCTATT ACGAAGACTAACTATGCTCCACTCCAATTATATCCCTGGCCTTTTTGTAA CACTTAACAAAATACAATCTACGCGATACTTAGTAACTCTTAGTAAATTT CGTGgttacacatttttttcaaaaggatacTAGCCAGTTTTGGCTGAAGA ATAGCTGTTCTTTTTTTTCGTAATTTCTAGGCTTAaaggttcttaaaatg tttttaaaatgtttttaataagcTTACTTTATTAATTTATTGAGACTTGA AAAAGCTTTCTTAGCCATTGCTAAATCTTTGTTCTTCGAATTTGAGCCTc atgatgttcttataaaatcgtACCCAtagaattgtttttataaaatagcg TGTAATTACAGGTATCTATATAATAATAGCCGTACGTGTCTGAATCCCTT TTTGCAGCGCTTTTGTTTTCGATAGCGGTTTTAGCTTGGGACGTCACAAA ATTAATtgcaaaatagagaaaaaaacagGATTACTCCAAACACATTTCGT CAGTCATCATGTACATTCTACGATAAAAGATAATTAGCAACGGATTTGAA GGCCCTAAATGTGAAACTGATAATTTTGCATCGAAGGATAAAGTCAACTT CACACCTGAGATGGCTATTTTTATAATGACAAAGTCGNAACTGATAATTT TGCATCGAAGGATAAAGTTAACTTCACACCTGAGATGGCTATTTTTATAG TGACAAAGTCTTCTTTGACGACGTCTGGGACCGCTATTTAACAAAATGAG TTGATTTTTCTTCTAGCGCTATTATGACCCACGCTTCAGTTCCAGAAGAT CAACGAACAAAACTCGGAATTACTGATACTTTCGTATGTtaatttttcca tttcttttatttaaaatatctCACTCTAAAGGAGCTAAGATTTTTTGGGT TAGATTTCCTTGTTATTCATTGCAAGGTCACACGTTTTTAACTTTCTGTT CATACTGCAGTATaattttattcattcgttttCAAGAAATATAAATCAGA TTTTCATGACTTTTATGGTAAATTCCGTTGAAAAGGAACTTAAAGGTTTG TATAGTTTAAACACAACCTTGTCACCGTGTAtgccaggctttatttacgt tactgattgacgtcTGGCGCTAAcagtaagcataaaaagctgataatacg cagggaaatGAGGTTGGTTTAAACATAGATGTTGTTAAAATTTTGACGCa aatttattcattttcttCTAGTTGAGAATGTCAGTTGGGCTAGAGGAAGC AGAAGACCTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGCCAACGTAA GTGTTTCGTCtctttaattgttctctttaggTTATTCTCTCAGTTAAGGC CATGTTTACACGTCACATGTAAGCGTTATTTCGTCTCACACGCTACTTTC CGCCTCGCTCTGAAACGAAATGAAGTTATTTTATTGGTTGAATTCAATTG TTTCGttacttctaaccaatagagcGGCTTTATTTCGTTTCTGAGTGGAA CGAAACCGTTGTCTGCCAACATGGTCTAATTAACTTCAAGTCACTATACG AATACGAATACGTCAGTGTTCGGTACAATTGACGCTttctaatttgattt tcaaggaGAGTTGGACTTTCATCGAAAAATGtaagcgtcgtttatgagag tttcttgttggcGATATTTCGCCAGTTAATTTTTATAAACTATATGAGCA CACGCGGGCGACCTCCGTGATATACACTATGCAAAAATTCTACTTACACC CCCCCCCAATACATTGAACGTATGTAATGTAGCAATACATTGAACGTATG TAGACGCAAATCAAGTTATAAGCTATCAAGTTAGAACAGAAGAGGAAAAC CATACGATTCTTGCTTATTTACTCATTCATTGACTCGTTCATtcatccat tcattcattcatccattCAGTCTGAAGATCCCCCAAGCAAACGACAAAAG ATTGCATAAACAAAACACGTACACACACTTATAATAAACAGGTACTCTCC CTCCCACCCTGACTTTTACTCCCTCCCCCACCCTGACTTTTACTACCTCT CCCACCCTAACTTTTACTCCCTCTCCCACCCTGACTTTACTCCCTCTCCC ACCCTGACTTTTACTACCTCTCCCACCCTAACTTTACTCCCTCTCCCACC CTGACTTTTACTCCTTTCCAGTAGGTCacagaaaaatgagaaaatgagaa aaatatacATGAGAGAGATATACATTTTTTGTCATTTCCAGTCAATGTTG AagccaatttcaaaaaaaggcCTAATCTTTTTTTACGTAAACATGAATTT GAGGATTCTcttaaaaaaagattgaaaactcGAAGAGCTGTTACAATCTG CTCTCTTCTTTCGCAGAGGGGGGACTGAAAAAATATGTCGTAgtttaatt gttttcttttttttcttatcaTTCTCAGAATTAATTTTGGGTGACGGTAT GTAATTTTTTTGGTGTTGACGAAAAAAATGACtgaattttatttataaaa tggACATgtctaattttattttttagaaaaagaaaaatctattttatttt gttatttatatCAGCAATTaaaattcaaccaaaaatattttaggtatttt tcagttgatgatttgttttttatgaaagtaagtttgaaaaattcgGTTTC AggtttatgttttaaaatttgcTTTTTGAGGAACATCTTTTATTATTGAA GGATTATTTTccctgttttttttatttctaaattcTCTTTTTCAATTTAG AAACCTTTCGCACTTAAGAACCATGATACTAATTTTTAGGGATTtctaga tttttaaaagaatagtaaaattgataaaaaattgaaagataaaGATCTAA TAGTGACattgcaaaaatttttcttttttctgtttgAAACCATCcccatt taaattttttttctgtttttaggtttgagatattttaagCTTTTAGTCAC CCAATACTCCAGTTTTTTACATAACAGCGAGGCTCAAAAACGCTGAGAAA TGAGAACAGTTAAAGAACAAAGCTGAGCCTGGAATTTCTTAATTTCAAGT GAgtcaaaaacgtaaaaatttgattgaaacCTAAATTGCCTCTATTTTGA CCGAAAATAAAACAGTATTACGAGAATTTTGTGCCGCAAGTGCCTCTGCA AAAATTTAGGCCTTTAAAAACAATTGTAGcattttttgatagtttttccN GCCGCAAGTGCCTCTGCAAAAATTTAGGCCTTTAAAAACAATTGTAGCat tttttggtagtttttccttTTAGTTTTCTTAGATCTTTATTGTTACgttg ttctcattttttttaattgggccattccaataaatctccatacagggggg ggggtggacgtATAGTATAGGTATGTGTGAATACCCtctgg

Coding sequence (CDS) from alignment at sc0000306:250672..255312+

>TCONS_00018786 ID=TCONS_00018786|Name=TCONS_00018786|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at sc0000306:250672..255312+ (Clytia hemisphaerica)
GCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGTGG
TGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAATGG
CCGTTGCTAAGGCTTTAGAAGCCCATCCATTGGTTGAACGTGTTTATTAC
CCAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGCAC
TGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAACCG
CTTCCAATTTCATGAAAGCATTAAAGGTGTTCACTTTGGCCGAAAGTTTG
GGAGGATTTGAGAGCTTAATCGAGCACCCCGCTATTATGACCCACGCTTC
AGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTTCTTGA
GAATGTCAGTTGGGCTAGAGGAAGCAGAAGACCTCGTCGCTGATATTGAA
CAAGCTTTAGCTGCTGCCAACTCTGAAGATCCCCCAAGCAAACGACAAAA
GATTGCATAAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTG
CCAACCGTGGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAG
AACGCAATGGCCGTTGCTAAGGCTTTAGAAGCCCATCCATTGGTTGAACG
TGTTTATTACCCAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAAC
GACAATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAAT
TTGGAAACCGCTTCCAATTTCATGAAAGCATTAAAGGTGTTCACTTTGGC
CGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCCGCTATTATGA
CCCACGCTTCAGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGAT
ACTTTCTTGAGAATGTCAGTTGGGCTAGAGGAAGCAGAAGACCTCGTCGC
TGATATTGAACAAGCTTTAGCTGCTGCCAACTCTGAAGATCCCCCAAGCA
AACGACAAAAGATTGCATAAGCATGTGGTGTTGTTCCCAGTCCTTTTGAT
TGTTACCTTGCCAACCGTGGTGCTAAAACATTGAAAGTGCGCATGCTCCA
ACATCAAAAGAACGCAATGGCCGTTGCTAAGGCTTTAGAAGCCCATCCAT
TGGTTGAACGTGTTTATTACCCAGGATTGAAGAGCCATCCAGCTCATGAA
TTGGTCAAACGACAATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCAT
CAAAGGAAATTTGGAAACCGCTTCCAATTTCATGAAAGCATTAAAGGTGT
TCACTTTGGCCGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCC
GCTATTATGACCCACGCTTCAGTTCCAGAAGATCAACGAACAAAACTCGG
AATTACTGATACTTTCTTGAGAATGTCAGTTGGGCTAGAGGAAGCAGAAG
ACCTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGCCAACTCTGAAGAT
CCCCCAAGCAAACGACAAAAGATTGCATAAGCATGTGGTGTTGTTCCCAG
TCCTTTTGATTGTTACCTTGCCAACCGTGGTGCTAAAACATTGAAAGTGC
GCATGCTCCAACATCAAAAGAACGCAATGGCCGTTGCTAAGGCTTTAGAA
GCCCATCCATTGGTTGAACGTGTTTATTACCCAGGATTGAAGAGCCATCC
AGCTCATGAATTGGTCAAACGACAATGCACTGGCTTCAGTGGTATGGTTT
CCATGGTCATCAAAGGAAATTTGGAAACCGCTTCCAATTTCATGAAAGCA
TTAAAGGTGTTCACTTTGGCCGAAAGTTTGGGAGGATTTGAGAGCTTAAT
CGAGCACCCCGCTATTATGACCCACGCTTCAGTTCCAGAAGATCAACGAA
CAAAACTCGGAATTACTGATACTTTCTTGAGAATGTCAGTTGGGCTAGAG
GAAGCAGAAGACCTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGCCAA
CTCTGAAGATCCCCCAAGCAAACGACAAAAGATTGCATAAGCATGTGGTG
TTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGTGGTGCTAAAACA
TTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAATGGCCGTTGCTAA
GGCTTTAGAAGCCCATCCATTGGTTGAACGTGTTTATTACCCAGGATTGA
AGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGCACTGGCTTCAGT
GGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAACCGCTTCCAATTT
CATGAAAGCATTAAAGGTGTTCACTTTGGCCGAAAGTTTGGGAGGATTTG
AGAGCTTAATCGAGCACCCCGCTATTATGACCCACGCTTCAGTTCCAGAA
GATCAACGAACAAAACTCGGAATTACTGATACTTTCTTGAGAATGTCAGT
TGGGCTAGAGGAAGCAGAAGACCTCGTCGCTGATATTGAACAAGCTTTAG
CTGCTGCCAACTCTGAAGATCCCCCAAGCAAACGACAAAAGATTGCATAA
GCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGTGG
TGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAATGG
CCGTTGCTAAGGCTTTAGAAGCCCATCCATTGGTTGAACGTGTTTATTAC
CCAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGCAC
TGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAACCG
CTTCCAATTTCATGAAAGCATTAAAGGTGTTCACTTTGGCCGAAAGTTTG
GGAGGATTTGAGAGCTTAATCGAGCACCCCGCTATTATGACCCACGCTTC
AGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTTCTTGA
GAATGTCAGTTGGGCTAGAGGAAGCAGAAGACCTCGTCGCTGATATTGAA
CAAGCTTTAGCTGCTGCCAACTCTGAAGATCCCCCAAGCAAACGACAAAA
GATTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010519XLOC_010519Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018786-proteinTCONS_00018786-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018786-exon-sc0000306-1491911889:250672..250827TCONS_00018786-exon-sc0000306-1491911889:250672..250827Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1510915933:250672..250827TCONS_00018786-exon-sc0000306-1510915933:250672..250827Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1575043694:250672..250827TCONS_00018786-exon-sc0000306-1575043694:250672..250827Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1491911889:251232..251353TCONS_00018786-exon-sc0000306-1491911889:251232..251353Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1510915933:251232..251353TCONS_00018786-exon-sc0000306-1510915933:251232..251353Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1575043694:251232..251353TCONS_00018786-exon-sc0000306-1575043694:251232..251353Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1491911889:251813..251865TCONS_00018786-exon-sc0000306-1491911889:251813..251865Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1510915933:251813..251865TCONS_00018786-exon-sc0000306-1510915933:251813..251865Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1575043694:251813..251865TCONS_00018786-exon-sc0000306-1575043694:251813..251865Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1491911889:252688..252754TCONS_00018786-exon-sc0000306-1491911889:252688..252754Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1510915933:252688..252754TCONS_00018786-exon-sc0000306-1510915933:252688..252754Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1575043694:252688..252754TCONS_00018786-exon-sc0000306-1575043694:252688..252754Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1491911889:253143..253217TCONS_00018786-exon-sc0000306-1491911889:253143..253217Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1510915933:253143..253217TCONS_00018786-exon-sc0000306-1510915933:253143..253217Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1575043694:253143..253217TCONS_00018786-exon-sc0000306-1575043694:253143..253217Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1491911889:253842..253912TCONS_00018786-exon-sc0000306-1491911889:253842..253912Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1510915933:253842..253912TCONS_00018786-exon-sc0000306-1510915933:253842..253912Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1575043694:253842..253912TCONS_00018786-exon-sc0000306-1575043694:253842..253912Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1491911889:254350..255312TCONS_00018786-exon-sc0000306-1491911889:254350..255312Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1510915933:254350..255312TCONS_00018786-exon-sc0000306-1510915933:254350..255312Clytia hemisphaericaexon
TCONS_00018786-exon-sc0000306-1575043694:254350..255312TCONS_00018786-exon-sc0000306-1575043694:254350..255312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:250672..255312 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03935 2.95754 1.56761 0.702743 2.11066 1.8669 15.5865 21.7833 60.385 35.8244 28.2682 60.493 63.2518 70.1387 9.21797 8.72644 1.98362 2.17271 2.85804 1.07725 2.42424 0.370174 0.367699 1.21118 16.1955 14.3297 6.18493 1.97877 1.28452 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000277Cys/Met-Metab_PyrdxlP-dep_enz
IPR015422PyrdxlP-dep_Trfase_sub2
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
BLAST of TCONS_00018786 vs. Swiss-Prot (Human)
Match: CGL (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.154e-57
Identity = 107/161 (66.46%), Postives = 127/161 (78.88%), Query Frame = 3
Query:    9 GVVPSPFDCYLANRGAKTLKVRMLQHQKNAMAVAKALEAHPLVERVYYPGLKSHPAHELVKRQCTGFSGMVSMVIKGNLETASNFMKALKVFTLAESLGGFESLIEHPAIMTHASVPEDQRTKLGITDTFLRMSVGLEEAEDLVADIEQALAAANSEDPPS 491
            G VPSP DCYL NRG KTL VRM +H KN MAVA+ LE++P VE+V YPGL SHP HELVKRQCTG +GMV+  IKG L+ A  F+K LK+FTLAESLGGFESL E PAIMTHASV ++ R  LGI+DT +R+SVGLE+ EDL+ D++QAL AA+   PPS
Sbjct:  244 GAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH---PPS 401          
The following BLAST results are available for this feature:
BLAST of TCONS_00018786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CGL2.154e-5766.46Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P... [more]
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