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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018770 ID=TCONS_00018770|Name=TCONS_00018770|organism=Clytia hemisphaerica|type=transcript|length=1037bpRun BLAST on NCBI transcript from alignment at sc0000306:100868..110502+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018770 ID=TCONS_00018770|Name=TCONS_00018770|organism=Clytia hemisphaerica|type=transcript|length=9635bp|location=Sequence derived from alignment at sc0000306:100868..110502+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018770 vs. Swiss-Prot (Human)
Match: ASNA (ATPase ASNA1 OS=Homo sapiens GN=ASNA1 PE=1 SV=2) HSP 1 Score: 393.66 bits (1010), Expect = 1.955e-135 Identity = 196/325 (60.31%), Postives = 262/325 (80.62%), Query Frame = 1
Query: 61 DFEEMAPSIQHLLDQKELRWVFXXXXXXXXXXXCSCSVAIQLAKHKKNVLIISTDPAHNISDAFDQKFGRKPTAVKGFTNLFAMEIDPNLGLTKLPEDVLEDQDFMSMGGKMFQDLLGAFPGIDEAMSFAEVMKLVRSMDFSVVVFDTAPTGHTLRLISFPSVMXXXXXXXXXXXXRIQPMIQQFSTLLGMQDMNMEQFTSRLDETLPVIKEVSAQFQNPDHTTFVCVCISEFLSLYETEHLVQELTKMNMDIRTIIVNQLVFPKKLQGGSACDLCSARSNIQKKYLEEIADLYEDFHVIKLPLLPKEVRGPQQIETFSDWLINP 1035
D E + P++ ++++Q+ L+W+FVGGKGGVGKTTCSCS+A+QL+K +++VLIISTDPAHNISDAFDQKF + PT VKG+ NLFAMEIDP+LG+ +LP++ E+ + +SMG KM Q+ + AFPGIDEAMS+AEVM+LV+ M+FSVVVFDTAPTGHTLRL++FP+++E+ L +L+ +K++I P I Q +LG+ DMN +Q S+L+ETLPVI+ VS QF++P+ TTF+CVCI+EFLSLYETE L+QEL K +D IIVNQLVFP + C +C AR IQ KYL+++ DLYEDFH++KLPLLP EVRG ++ TFS L+ P
Sbjct: 20 DVEPLEPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFDQKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQMCNMLGLGDMNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQELAKCKIDTHNIIVNQLVFPDPEK---PCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPHEVRGADKVNTFSALLLEP 341 The following BLAST results are available for this feature:
BLAST of TCONS_00018770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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