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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018766 ID=TCONS_00018766|Name=TCONS_00018766|organism=Clytia hemisphaerica|type=transcript|length=649bp
caagttgaaggcctaaaaattgacattctcgctcgaacttcaattttcga
aaaattgtaaattagccaaaagtgccaatatattatgaccctgattgtaA
CCTTTGCTCCAATTACTCTCCAAGGCTATATGCTATCTTAGTAACTGACG
TTAGATCACTGTCTATTTTTTGTTACAAAGGATTCTTATTTTTCTAGACA
TTTTAAATCTTAGCCAAAATTTTTGTCTGTCGATTTTTCATTGCCTTGCT
AAGACCCCTgattatttttatcaatttctgaGTAAACCATTGGTGATGGC
CAAAAAGGTCACTATCCATAAGCTCATAAGGCTATTTTAACAACAATCTT
TTTAATCGGAAAATGGTCACCTTCCCAAAACCAGGCTCTAAAAAGCAtga
ccaatgaaaaaattttggtatttgatattttctttttctgtttctttttc
ttcagaTAAAGATAGACAAGCATCAAaaacattGAACCCATGGAACCAAC
CTTCAGACCATTAAATATCAGATCGTGACATCAGCTGTATTAGTTTGTAA
TTTCGAGTGTATTTACTACACATTTTTATTCAGGAATAGAATAatatgaa
aaattacaaaatgtctttccagtttttttcttaGGAATTCATAACAAGA Run BLAST on NCBI transcript from alignment at sc0000306:76845..79675+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018766 ID=TCONS_00018766|Name=TCONS_00018766|organism=Clytia hemisphaerica|type=transcript|length=2831bp|location=Sequence derived from alignment at sc0000306:76845..79675+ (Clytia hemisphaerica)
caagttgaaggcctaaaaattgacattctcgctcgaacttcaattttcga
aaaattgtaaattagccaaaagtgccaatatattatgaccctgattgtaA
CCTTTGCTCCAATTACTCTCCAAGGCTATATGCTATCTTAGTAACTGACG
TTAGATCACTGTCTATTTTTTGTTACAAAGGATTCTTATTTTTCTAGACA
TTTTAAATCTTAGCCAAAATTTTTGTCTGTCGATTTTTCATTGCCTTGCT
AAGACCCCTgattatttttatcaatttctgaGTAAACCATTGGTGATGGC
CAAAAAGGTCACTATCCATAAGCTCATAAGGCTATTTTAACAACAATCTT
TTTAATCGGAAAATGGTCACCTTCCCAAAACCAGGCTCTAAAAAGCAtga
ccaatgaaaaaattttggtatttgatattttctttttctgtttctttttc
ttcagaTAAAGATAGACAAGCATCAAGTaagactttcattttaaattgaC
TTTATTTTAAACATTATTATTGCCTGTTTGAAACTTATGTACATGAAGGA
ACTTTAATTTAAGTTTCTTGTGTACAtaaagggaacttattttgacaaGA
ACTAAGAGCAgcaaaaatcgtgaaaatttttaatattggCGGGAACTTCT
TTTGGCGAATTCGgtcaaactttttaaattttggtgaGAGCTAATAAACG
ATATCGGCCTTCCGAATTCTCCCcaaatgattacccatgatgcattgcgc
aaaaaattcACGCAAATTCAATATCGTACGTGAATtattttgcgcaatgc
atcatgggtaatcattcggggagaattcggaaagtcgatatcgtctattt
gtcgttctttttggacctaccctaaggtagtcctttaaattaacccttgt
ccgttcgtccgtccgttcgtctgttgccagcttttctcgggatcggctca
ttagttttttctaattttttgcacaatggtgcaaaatggcaatgcccaaa
atgtgacggagcccgattttcgaaaaaaaaatttttccggtcgcCAGGTC
CGGAAATGTCCCGGAAAAAGCGGTTTTTggggattttctcgagattctat
cattagttttttctgattttttgtacatagaGGCGcgttagtactgccga
aaagatgttgaaaaccgttttccgaaaaaaaattttttccggcctgtaga
accggaaatgtgccggaaatgtgccggaaatcgccattttttcGTATTTC
CGTGacactttttcaacttatttgaccgtttttttacagaaaaaagttCT
CTATGGTGATGCCCAAAACTTTGCatcatttaattttcaataaaataatt
tgttcaatccggaactccttaaaaattgccggaacagccgaaaaccggcg
taaaacagatatccttcattttttcgaattataCTTGACAgactttcatg
attttttgcacaatgatgcaaaatggcaatgccaaAAATGTagcggagcc
cgattttcgaaaaaaaaatttttccggccgaaaatggcggaaatatgccg
gaaaaactggtttttcggcattttctcgagatttcatcattagttttttc
ggattttttgctcaaagatgcgtattaacaatacccaaaacatggcctag
tccaattcttgagaaagaattttttccggccgaaaatgccggaaatatgc
cggaaatcgccgtttttctggattttcattggattttttccatataattg
gttgtttttttcattcaaaaacattattaatagcaatgcccaccattaag
catgtttcaattttcaataaaatttgatttttgaagccggaactttctaa
aaatcgccggaacagccgattttcgccggaaaaacggtttttcttttgag
ctgtactttatatttttttatgaaattttgcacactgatgcaaaatgtca
atacctaaattgtgacagagcccgattttcgaaaaaaaattcatttcatg
ccgaaaatgccggaaatatgccggaaaaactggttttttgatattttctc
gaattttcatttttatttttttctgattttttgcagaaagatgcgtattc
gcaatgctcaaaacatggccgagttgtATTTTTGAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTATA
TTTCTAtgcttttcacacaaaaacattattcataacaatgctcattatca
agcatgattcaattgtcaataaaactgatttttgcgaccataacttccta
tttattatttccctacaacccttccctctccccccatcaacaatcaatga
tgaatttattgtgttgtgtattttcgctaaacgctatattttctgactga
tttttcttttcgcattgctatctaactttaatcatcaggtaggtccattc
agcatattgcttgttgaaatttgtcattcttttttacTGTTTCGAAGCAG
GCACTTTCTCTCCCTCTTTATATTCGTCTTCTTGATATCTTAttattcta
tttttcagaaacattGAACCCATGGAACCAACCTTCAGACCATTAAATAT
CAGATCGTGACATCAGCTGTATTAGTTTGTAATTTCGAGTGTATTTACTA
CACATTTTTATTCAGGAATAGAATAatatgaaaaattacaaaatgtcttt
ccagtttttttcttaGGAATTCATAACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018766-exon-sc0000306-1491911889:76845..77320 | TCONS_00018766-exon-sc0000306-1491911889:76845..77320 | Clytia hemisphaerica | exon |
| TCONS_00018766-exon-sc0000306-1510915933:76845..77320 | TCONS_00018766-exon-sc0000306-1510915933:76845..77320 | Clytia hemisphaerica | exon |
| TCONS_00018766-exon-sc0000306-1575043694:76845..77320 | TCONS_00018766-exon-sc0000306-1575043694:76845..77320 | Clytia hemisphaerica | exon |
| TCONS_00018766-exon-sc0000306-1491911889:79503..79675 | TCONS_00018766-exon-sc0000306-1491911889:79503..79675 | Clytia hemisphaerica | exon |
| TCONS_00018766-exon-sc0000306-1510915933:79503..79675 | TCONS_00018766-exon-sc0000306-1510915933:79503..79675 | Clytia hemisphaerica | exon |
| TCONS_00018766-exon-sc0000306-1575043694:79503..79675 | TCONS_00018766-exon-sc0000306-1575043694:79503..79675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000306 | supercontig | sc0000306:76845..79675 + |
Blast
The following BLAST results are available for this feature:
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