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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018765 ID=TCONS_00018765|Name=TCONS_00018765|organism=Clytia hemisphaerica|type=transcript|length=4671bpRun BLAST on NCBI protein sequence of TCONS_00018765-protein >TCONS_00018765-protein ID=TCONS_00018765-protein|Name=TCONS_00018765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp QEYQSFTDLQFSKNKTVHDIQWHPHIKGVIAVSCTEHMSFYERIDKTTRARun BLAST on NCBI transcript from alignment at sc0000306:22306..36854+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018765 ID=TCONS_00018765|Name=TCONS_00018765|organism=Clytia hemisphaerica|type=transcript|length=14549bp|location=Sequence derived from alignment at sc0000306:22306..36854+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000306:22306..36854+ >TCONS_00018765 ID=TCONS_00018765|Name=TCONS_00018765|organism=Clytia hemisphaerica|type=CDS|length=29754bp|location=Sequence derived from alignment at sc0000306:22306..36854+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018765 vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1) HSP 1 Score: 457.218 bits (1175), Expect = 7.397e-140 Identity = 238/560 (42.50%), Postives = 329/560 (58.75%), Query Frame = 2
Query: 2 QEYQSFTDLQFSKNKTVHDIQWHPHIKGVIAVSCTEHMSFYERIDKTTRASQSPSLILIWSFADPIHPLLLLEAPDDILCFKFNPSDPNIVCAGCFNGQIVLWDIKNYNDLLVNHKTHGQGSNPNQNMSNLPSFY-NTNTTELSPKVRYCAVSSIENSHRMPITDIQWIPDDIEIGRMGAVLENRLRYCSQIMTASSDGHVLFWDTRASKSGVARTPMPENTSSNRV-----TTFQHLDLSWKPLLKVTAHRLRGSGECSPVKFIIDEVQSSARRPDIPLTQPVEEEDNNFTSFKKKDEP-----KSLDNINSKFYVATEDGEVIYLDWKPTKDIDTGKIVSNRPEHSFDAHDSTINTLQKSPFNKTIFLTVGGWTFSIWKDGVTFGPLIQSYPHDCKLTSGMWSPSRPSVFFIGKADGNIDVWDLLDKSHEPFLTQNVSPVPIITVSPFQMSPKQQLLAAGDEVGTLHVMEVPWNLRYATTNELHAFEHYLDREASRLELLD---KTRGQNSLPTSIKV-DSKAGHVQETEEEWDTRSKAQYAEYLEMEKKLLTEMGLL 1636
+EYQSFTDL K + + WHP I G+IAVS +SF +R+ + + PSLIL WSF+DPIHP L+LE+PDDI CFKF PSDPNI+ GC NGQIV+WDI + D + N K G S + + P F + + + +R+CAVSSIEN H+ ITDI W+ D EI RMG+V ENR C Q++T S+D + FWD R K +T + S + +TF HLDLSWKPL KV + S + P K ++E + D L Q E+ + + K +D+ +KF+V TE+GEVIY DWK KD +TG+++S +P HD T++T+Q+SPF I LTVGGW +IWK+GV GPL+QS + TSG WS +RP VF+IG+ DG ID+WDLL+K+HEP +QN+ I + P+ S KQQ +A D GTLH++E+PW L +TNE+ + HY +RE LE ++ K R Q +++ K Q+++E+ K Y YLE+EK +L +GL+
Sbjct: 323 KEYQSFTDLHSPTEKMITCVSWHPTIYGLIAVSVAVRLSFEDRVHFSGKLLLQPSLILFWSFSDPIHPQLMLESPDDIFCFKFCPSDPNIIAGGCINGQIVMWDITAHADRIENIKAGGSRS---KRATLKPMFLLEPESNKEAMYIRHCAVSSIENGHKKVITDIHWLSDTFEINRMGSVFENRSGICCQLVTCSADCTICFWDIRPQKPLTPQTTEKKKEESIEIPFDVPSTFLHLDLSWKPLTKVRLSKGETSLDHCPTKISLNEDHLLCKTQDKMLAQSKTEKAEEMNPYHNLESGMANLLKPIDDFCTKFFVGTEEGEVIYTDWKMEKDPETGRLMSKKPVSHHTIHDGTVHTIQRSPFYNDIILTVGGWNVAIWKEGVMTGPLLQSCCAPKRYTSGHWSLTRPGVFYIGREDGYIDIWDLLEKTHEPAQSQNICITMITYIKPWIFSSKQQFIATADYYGTLHILEIPWTLSRPSTNEMASVNHYFEREVKHLEYVEQRKKIREQEKKEMELEMAKKKVKTYQKSKEQMQAELKMDYESYLELEKTVLINLGLI 879 The following BLAST results are available for this feature:
BLAST of TCONS_00018765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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