TCONS_00018765-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018765-protein
Unique NameTCONS_00018765-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018765-protein ID=TCONS_00018765-protein|Name=TCONS_00018765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp
QEYQSFTDLQFSKNKTVHDIQWHPHIKGVIAVSCTEHMSFYERIDKTTRA
SQSPSLILIWSFADPIHPLLLLEAPDDILCFKFNPSDPNIVCAGCFNGQI
VLWDIKNYNDLLVNHKTHGQGSNPNQNMSNLPSFYNTNTTELSPKVRYCA
VSSIENSHRMPITDIQWIPDDIEIGRMGAVLENRLRYCSQIMTASSDGHV
LFWDTRASKSGVARTPMPENTSSNRVTTFQHLDLSWKPLLKVTAHRLRGS
GECSPVKFIIDEVQSSARRPDIPLTQPVEEEDNNFTSFKKKDEPKSLDNI
NSKFYVATEDGEVIYLDWKPTKDIDTGKIVSNRPEHSFDAHDSTINTLQK
SPFNKTIFLTVGGWTFSIWKDGVTFGPLIQSYPHDCKLTSGMWSPSRPSV
FFIGKADGNIDVWDLLDKSHEPFLTQNVSPVPIITVSPFQMSPKQQLLAA
GDEVGTLHVMEVPWNLRYATTNELHAFEHYLDREASRLELLDKTRGQNSL
PTSIKVDSKAGHVQETEEEWDTRSKAQYAEYLEMEKKLLTEMGLLVESME
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010508XLOC_010508Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018765TCONS_00018765Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 65..104
e-value: 0.0089
score: 25.2
coord: 375..414
e-value: 2.2
score: 14.9
coord: 147..204
e-value: 0.028
score: 23.6
coord: 331..370
e-value: 0.82
score: 17.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 7..538
e-value: 1.7E-36
score: 125.2
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 91..105
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 14..111
coord: 282..462
coord: 152..207

Blast
[Close]
BLAST of TCONS_00018765-protein vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1)

HSP 1 Score: 457.218 bits (1175), Expect = 9.933e-152
Identity = 238/560 (42.50%), Postives = 329/560 (58.75%), Query Frame = 0 
Query:    1 QEYQSFTDLQFSKNKTVHDIQWHPHIKGVIAVSCTEHMSFYERIDKTTRASQSPSLILIWSFADPIHPLLLLEAPDDILCFKFNPSDPNIVCAGCFNGQIVLWDIKNYNDLLVNHKTHGQGSNPNQNMSNLPSFY-NTNTTELSPKVRYCAVSSIENSHRMPITDIQWIPDDIEIGRMGAVLENRLRYCSQIMTASSDGHVLFWDTRASKSGVARTPMPENTSSNRV-----TTFQHLDLSWKPLLKVTAHRLRGSGECSPVKFIIDEVQSSARRPDIPLTQPVEEEDNNFTSFKKKDEP-----KSLDNINSKFYVATEDGEVIYLDWKPTKDIDTGKIVSNRPEHSFDAHDSTINTLQKSPFNKTIFLTVGGWTFSIWKDGVTFGPLIQSYPHDCKLTSGMWSPSRPSVFFIGKADGNIDVWDLLDKSHEPFLTQNVSPVPIITVSPFQMSPKQQLLAAGDEVGTLHVMEVPWNLRYATTNELHAFEHYLDREASRLELLD---KTRGQNSLPTSIKV-DSKAGHVQETEEEWDTRSKAQYAEYLEMEKKLLTEMGLL 545
            +EYQSFTDL     K +  + WHP I G+IAVS    +SF +R+  + +    PSLIL WSF+DPIHP L+LE+PDDI CFKF PSDPNI+  GC NGQIV+WDI  + D + N K  G  S   +  +  P F     + + +  +R+CAVSSIEN H+  ITDI W+ D  EI RMG+V ENR   C Q++T S+D  + FWD R  K    +T   +   S  +     +TF HLDLSWKPL KV   +   S +  P K  ++E     +  D  L Q   E+      +   +       K +D+  +KF+V TE+GEVIY DWK  KD +TG+++S +P      HD T++T+Q+SPF   I LTVGGW  +IWK+GV  GPL+QS     + TSG WS +RP VF+IG+ DG ID+WDLL+K+HEP  +QN+    I  + P+  S KQQ +A  D  GTLH++E+PW L   +TNE+ +  HY +RE   LE ++   K R Q      +++   K    Q+++E+     K  Y  YLE+EK +L  +GL+
Sbjct:  323 KEYQSFTDLHSPTEKMITCVSWHPTIYGLIAVSVAVRLSFEDRVHFSGKLLLQPSLILFWSFSDPIHPQLMLESPDDIFCFKFCPSDPNIIAGGCINGQIVMWDITAHADRIENIKAGGSRS---KRATLKPMFLLEPESNKEAMYIRHCAVSSIENGHKKVITDIHWLSDTFEINRMGSVFENRSGICCQLVTCSADCTICFWDIRPQKPLTPQTTEKKKEESIEIPFDVPSTFLHLDLSWKPLTKVRLSKGETSLDHCPTKISLNEDHLLCKTQDKMLAQSKTEKAEEMNPYHNLESGMANLLKPIDDFCTKFFVGTEEGEVIYTDWKMEKDPETGRLMSKKPVSHHTIHDGTVHTIQRSPFYNDIILTVGGWNVAIWKEGVMTGPLLQSCCAPKRYTSGHWSLTRPGVFYIGREDGYIDIWDLLEKTHEPAQSQNICITMITYIKPWIFSSKQQFIATADYYGTLHILEIPWTLSRPSTNEMASVNHYFEREVKHLEYVEQRKKIREQEKKEMELEMAKKKVKTYQKSKEQMQAELKMDYESYLELEKTVLINLGLI 879
The following BLAST results are available for this feature:
BLAST of TCONS_00018765-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR639.933e-15242.50WD repeat-containing protein 63 OS=Homo sapiens GN... [more]
back to top