TCONS_00018760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018760
Unique NameTCONS_00018760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018760 ID=TCONS_00018760|Name=TCONS_00018760|organism=Clytia hemisphaerica|type=transcript|length=1605bp
AAGGCATGATCCTTAAAAAATGTAAGCAAAGAAAACGTGTGAAAGCAGGT
GAAAAGTatcaatgacaaaaaaacagacaaaattTATTGTATTTCTAATT
GTGATGCAATCTACAAGGAtagtttcaaaattaaaaaaccttTTCCATAC
AGAGGTTCATAAAATTAAGTCAGACATAAACAAAACAAGTTCATTCTAAT
TACCATGCACCATTTATCTCCGCATGTAAAAAAGCAGGTAAATTATAATA
ATAAATATTCTAAAGAGGTACGACATTAAAAAGCATTTGatttattaaaa
taattttatgatTCAAAGCAAATTcagacttcaaataacaaaggATCTAA
CATGCTATGTATTAAATTGAATTGAGAactaaaataaattaatttcatct
aaaaatcatcatcttcttGTTGATAAAGTTCAGCAACTAAACGATAAACA
TAGGAAGGTGAATTGCCACCAACATCCGTAATGAGTAGATCAACAGTATC
AGGTTTAATGTACGTAAACTTTGGTGTTGTTGTCTCAAAGTCAAAATCTC
TTGGTTTCATATTAAAATCTAACGATAATTCTGGAGAAACAAAATCTCCA
CCATGCTCTTGATTGACAAATTTTGGTGTAAGCTTGAATAAAGCAGAGCA
TACTATAACTGGTACTGCGTGATGCTTTGCTGCAAGTGCCATTGATTGAG
CTCCATTACTAGCCTTCAAACCGCCATCAGCATAAACTGTGTGAGCTCCT
ATGATGACTTTATTAACACGAGACATGATTGCGAAAACTGCTGAGTCAGG
AATGACAGTAGTTTCAATACCATGCTCAGCAAGACTTTTTGCTAGTTCTT
GTCCATGAAAGAATGGTGCACATTCAGCAACAATGacagaaaattttctt
ttcaagaaagcttttttcaaaaatagctcAACAGTTCTAGACTTTCCGTA
AGTCATAATAATTTCATTAGAGTGGATGTACTCTGACGATTTCAAAGCAA
TGTTACTCCTGCTTGTTTCTAATTCAGATATTAATTCATTGATAGAGTCA
ATGACAACTGACTTCAACCCTGGTACAACTAAAGTCAAGTCATCACTTGA
GTGGTTGTTTGCCATCAGAATGGTTTGAAGGGATGAGCTTCCTTCGATAT
TAGTACCACTTGCACCAAAATACTCTTCTCGAATTAATTTTGACACTCTC
TTGACCATGTTTATGATGACCTCTGAAGGATTCATTTCAAATAAACTTTT
ACCCAAAAAACGAACACATTCTATTAGCTCTTTGGCATTAATCCAATTGA
CTTTACCAACAACTTTTCTAAATAATAGTACCACTGTATGGGCAATATCA
AAAGATCCTATCAAAGAGTTTTGCTTGATCTTTGATTGGAATTCTTGAGA
CAACTCCAGCAAGTCTGATTTATATTGATCCATCAccattattttcaata
aaactatCTGGAAAAAATTGATTTGTAATGTAATAACATACCAAGTGAGA
CTCGTATCGATTTTATCATGTTCTGGTCATGTGATTGAAAGCGCTTTAGA
ACTTGTAGCTAGAGAACACTAAAGTTAGACATAAAGAAACAATTCCCAAG
TGACA
Run BLAST on NCBI

protein sequence of TCONS_00018760-protein

>TCONS_00018760-protein ID=TCONS_00018760-protein|Name=TCONS_00018760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MVMDQYKSDLLELSQEFQSKIKQNSLIGSFDIAHTVVLLFRKVVGKVNWI
NAKELIECVRFLGKSLFEMNPSEVIINMVKRVSKLIREEYFGASGTNIEG
SSSLQTILMANNHSSDDLTLVVPGLKSVVIDSINELISELETSRSNIALK
SSEYIHSNEIIMTYGKSRTVELFLKKAFLKRKFSVIVAECAPFFHGQELA
KSLAEHGIETTVIPDSAVFAIMSRVNKVIIGAHTVYADGGLKASNGAQSM
ALAAKHHAVPVIVCSALFKLTPKFVNQEHGGDFVSPELSLDFNMKPRDFD
FETTTPKFTYIKPDTVDLLITDVGGNSPSYVYRLVAELYQQEDDDF
Run BLAST on NCBI

transcript from alignment at sc0000305:287855..289459

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018760 ID=TCONS_00018760|Name=TCONS_00018760|organism=Clytia hemisphaerica|type=transcript|length=1605bp|location=Sequence derived from alignment at sc0000305:287855..289459 (Clytia hemisphaerica)
TGTCACTTGGGAATTGTTTCTTTATGTCTAACTTTAGTGTTCTCTAGCTA
CAAGTTCTAAAGCGCTTTCAATCACATGACCAGAACATGATAAAATCGAT
ACGAGTCTCACTTGGTATGTTATTACATTACAAATCAATTTTTTCCAGat
agttttattgaaaataatggTGATGGATCAATATAAATCAGACTTGCTGG
AGTTGTCTCAAGAATTCCAATCAAAGATCAAGCAAAACTCTTTGATAGGA
TCTTTTGATATTGCCCATACAGTGGTACTATTATTTAGAAAAGTTGTTGG
TAAAGTCAATTGGATTAATGCCAAAGAGCTAATAGAATGTGTTCGTTTTT
TGGGTAAAAGTTTATTTGAAATGAATCCTTCAGAGGTCATCATAAACATG
GTCAAGAGAGTGTCAAAATTAATTCGAGAAGAGTATTTTGGTGCAAGTGG
TACTAATATCGAAGGAAGCTCATCCCTTCAAACCATTCTGATGGCAAACA
ACCACTCAAGTGATGACTTGACTTTAGTTGTACCAGGGTTGAAGTCAGTT
GTCATTGACTCTATCAATGAATTAATATCTGAATTAGAAACAAGCAGGAG
TAACATTGCTTTGAAATCGTCAGAGTACATCCACTCTAATGAAATTATTA
TGACTTACGGAAAGTCTAGAACTGTTgagctatttttgaaaaaagctttc
ttgaaaagaaaattttctgtCATTGTTGCTGAATGTGCACCATTCTTTCA
TGGACAAGAACTAGCAAAAAGTCTTGCTGAGCATGGTATTGAAACTACTG
TCATTCCTGACTCAGCAGTTTTCGCAATCATGTCTCGTGTTAATAAAGTC
ATCATAGGAGCTCACACAGTTTATGCTGATGGCGGTTTGAAGGCTAGTAA
TGGAGCTCAATCAATGGCACTTGCAGCAAAGCATCACGCAGTACCAGTTA
TAGTATGCTCTGCTTTATTCAAGCTTACACCAAAATTTGTCAATCAAGAG
CATGGTGGAGATTTTGTTTCTCCAGAATTATCGTTAGATTTTAATATGAA
ACCAAGAGATTTTGACTTTGAGACAACAACACCAAAGTTTACGTACATTA
AACCTGATACTGTTGATCTACTCATTACGGATGTTGGTGGCAATTCACCT
TCCTATGTTTATCGTTTAGTTGCTGAACTTTATCAACaagaagatgatga
tttttagatgaaattaatttattttagtTCTCAATTCAATTTAATACATA
GCATGTTAGATcctttgttatttgaagtctgAATTTGCTTTGAatcataa
aattattttaataaatCAAATGCTTTTTAATGTCGTACCTCTTTAGAATA
TTTATTATTATAATTTACCTGCTTTTTTACATGCGGAGATAAATGGTGCA
TGGTAATTAGAATGAACTTGTTTTGTTTATGTCTGACTTAATTTTATGAA
CCTCTGTATGGAAaaggttttttaattttgaaactaTCCTTGTAGATTGC
ATCACAATTAGAAATACAATAaattttgtctgtttttttgtcattgatAC
TTTTCACCTGCTTTCACACGTTTTCTTTGCTTACATTTTTTAAGGATCAT
GCCTT

Coding sequence (CDS) from alignment at sc0000305:287855..289459

>TCONS_00018760 ID=TCONS_00018760|Name=TCONS_00018760|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at sc0000305:287855..289459 (Clytia hemisphaerica)
atggTGATGGATCAATATAAATCAGACTTGCTGGAGTTGTCTCAAGAATT
CCAATCAAAGATCAAGCAAAACTCTTTGATAGGATCTTTTGATATTGCCC
ATACAGTGGTACTATTATTTAGAAAAGTTGTTGGTAAAGTCAATTGGATT
AATGCCAAAGAGCTAATAGAATGTGTTCGTTTTTTGGGTAAAAGTTTATT
TGAAATGAATCCTTCAGAGGTCATCATAAACATGGTCAAGAGAGTGTCAA
AATTAATTCGAGAAGAGTATTTTGGTGCAAGTGGTACTAATATCGAAGGA
AGCTCATCCCTTCAAACCATTCTGATGGCAAACAACCACTCAAGTGATGA
CTTGACTTTAGTTGTACCAGGGTTGAAGTCAGTTGTCATTGACTCTATCA
ATGAATTAATATCTGAATTAGAAACAAGCAGGAGTAACATTGCTTTGAAA
TCGTCAGAGTACATCCACTCTAATGAAATTATTATGACTTACGGAAAGTC
TAGAACTGTTgagctatttttgaaaaaagctttcttgaaaagaaaatttt
ctgtCATTGTTGCTGAATGTGCACCATTCTTTCATGGACAAGAACTAGCA
AAAAGTCTTGCTGAGCATGGTATTGAAACTACTGTCATTCCTGACTCAGC
AGTTTTCGCAATCATGTCTCGTGTTAATAAAGTCATCATAGGAGCTCACA
CAGTTTATGCTGATGGCGGTTTGAAGGCTAGTAATGGAGCTCAATCAATG
GCACTTGCAGCAAAGCATCACGCAGTACCAGTTATAGTATGCTCTGCTTT
ATTCAAGCTTACACCAAAATTTGTCAATCAAGAGCATGGTGGAGATTTTG
TTTCTCCAGAATTATCGTTAGATTTTAATATGAAACCAAGAGATTTTGAC
TTTGAGACAACAACACCAAAGTTTACGTACATTAAACCTGATACTGTTGA
TCTACTCATTACGGATGTTGGTGGCAATTCACCTTCCTATGTTTATCGTT
TAGTTGCTGAACTTTATCAACaagaagatgatgatttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010504XLOC_010504Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018760-proteinTCONS_00018760-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018760-exon-sc0000305-1491911889:287855..289459TCONS_00018760-exon-sc0000305-1491911889:287855..289459Clytia hemisphaericaexon
TCONS_00018760-exon-sc0000305-1510915933:287855..289459TCONS_00018760-exon-sc0000305-1510915933:287855..289459Clytia hemisphaericaexon
TCONS_00018760-exon-sc0000305-1575043694:287855..289459TCONS_00018760-exon-sc0000305-1575043694:287855..289459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:287855..289459 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.3225	63.245	38.5008	40.1162	14.1201	10.2371	12.1219	13.1837	11.6502	9.44357	6.30817	6.31321	5.69596	6.98603	8.52862	7.46449	11.2942	7.35246	3.91725	3.81642	8.84576	7.19109	61.4251	54.9171	5.21157	7.25686	8.25884	7.06612	24.6815	31.2679
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000649IF-2B-related
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
Blast
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BLAST of TCONS_00018760 vs. Swiss-Prot (Human)
Match: EI2BB (Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3)

HSP 1 Score: 268.855 bits (686), Expect = 2.945e-84
Identity = 155/340 (45.59%), Postives = 221/340 (65.00%), Query Frame = -2 
Query:  411 ELSQEFQSKIKQNSLIG----SFDIAHTVVLLFRKVVGKVNWINAKELIECVRFLGKSLFEMNPSEVII-NMVKRVSKLIREEYFGASGTNIEG--SSSLQTILMANNHSSDDLTLVVPGLKSVVIDSINELISELETSRSNIALKSSEYIHSNEIIMTYGKSRTVEXXXXXXXXXXXFSVIVAECAPFFHGQELAKSLAEHGIETTVIPDSAVFAIMSRVNKVIIGAHTVYADGGLKASNGAQSMALAAKHHAVPVIVCSALFKLTPKFVNQEHG-GDFVSPELSLDFNMKPRDFDFETTTPKFTYIKPDTVDLLITDVGGNSPSYVYRLVAELYQQED 1406
            ELS+  +S ++     G    S ++A   + L R+++    W NA EL+E +R  G+ +    PSE  + NMV+RV K+IREEY    G + E     SL  +L +    ++D +     L+S +I++INEL+ ELE +  NIA ++ E+IHSNE+IMT G SRTVE FLK+A  KRKF VIVAECAPF  G E+A +L++ GIETTV+ D+A+FA+MSRVNKVIIG  T+ A+G L+A  G  ++ALAAKHH+ P+IVC+ +FKL+P+F N+E     FV+PE  L F             P F Y+ P+ + L I+++GGN+PSY+YRL++ELY  +D
Sbjct:   10 ELSERIESFVETLKRGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMELIRREGRRMTAAQPSETTVGNMVRRVLKIIREEYGRLHGRSDESDQQESLHKLLTSGG-LNEDFSFHYAQLQSNIIEAINELLVELEGTMENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEAARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEGDILEKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELYHPDD 348
The following BLAST results are available for this feature:
BLAST of TCONS_00018760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EI2BB2.945e-8445.59Translation initiation factor eIF-2B subunit beta ... [more]
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