TCONS_00018752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018752
Unique NameTCONS_00018752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018752 ID=TCONS_00018752|Name=TCONS_00018752|organism=Clytia hemisphaerica|type=transcript|length=362bp
GATGGATTATTGGATGAAGTATCCTAACGTATACATTTCCTATGTAAATg
taatgaagaagaagagagaagtaattttcaccaaattatGGCGGCTTTCA
CTGCAATTCGATTGAAGACGATAATGTGATAATATTCGATGAACTTTTAG
ATCGTATACTGGAATTCCATTAAGTAAGATGAAagtatctttcaacaaat
tatggacaaaaatccAAACGGTGCGATTATCGATTTGCAATTGATGCACT
GCTGCGATTTGATATTTAAGACGATGATGCGATATATGATTTGATGAACT
TTTAGATCATTTATTATCATAAAGTGTTACTGGGATTTGATTAAGTAaga
ccaaagtatttt
Run BLAST on NCBI

transcript from alignment at sc0000305:81781..82142

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018752 ID=TCONS_00018752|Name=TCONS_00018752|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at sc0000305:81781..82142 (Clytia hemisphaerica)
aaaatactttggtctTACTTAATCAAATCCCAGTAACACTTTATGATAAT
AAATGATCTAAAAGTTCATCAAATCATATATCGCATCATCGTCTTAAATA
TCAAATCGCAGCAGTGCATCAATTGCAAATCGATAATCGCACCGTTTgga
tttttgtccataatttgttgaaagatactTTCATCTTACTTAATGGAATT
CCAGTATACGATCTAAAAGTTCATCGAATATTATCACATTATCGTCTTCA
ATCGAATTGCAGTGAAAGCCGCCataatttggtgaaaattacttctctct
tcttcttcattacATTTACATAGGAAATGTATACGTTAGGATACTTCATC
CAATAATCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010496XLOC_010496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018752-exon-sc0000305-1491911889:81781..82142TCONS_00018752-exon-sc0000305-1491911889:81781..82142Clytia hemisphaericaexon
TCONS_00018752-exon-sc0000305-1510915933:81781..82142TCONS_00018752-exon-sc0000305-1510915933:81781..82142Clytia hemisphaericaexon
TCONS_00018752-exon-sc0000305-1575043694:81781..82142TCONS_00018752-exon-sc0000305-1575043694:81781..82142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:81781..82142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57942	1.43687	1.35391	0.600787	1.76358	1.35384	2.39198	1.35403	3.13657	1.77834	2.73519	3.05381	0.92555	0.666691	0.269561	1.04341	1.34543	1.42392	2.36145	2.55074	4.95368	7.41828	2.70571	1.86634	0	0.478518	6.92996	1.86688	6.54423	4.05868
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top