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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018745 ID=TCONS_00018745|Name=TCONS_00018745|organism=Clytia hemisphaerica|type=transcript|length=1547bpRun BLAST on NCBI protein sequence of TCONS_00018745-protein >TCONS_00018745-protein ID=TCONS_00018745-protein|Name=TCONS_00018745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp MTSGDNPPLDSEDGEKKQLVEGRKKYDPNFKGPIKNRGCTDVICCVIFGVRun BLAST on NCBI transcript from alignment at sc0000305:318038..331808- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018745 ID=TCONS_00018745|Name=TCONS_00018745|organism=Clytia hemisphaerica|type=transcript|length=13771bp|location=Sequence derived from alignment at sc0000305:318038..331808- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000305:318038..331808- >TCONS_00018745 ID=TCONS_00018745|Name=TCONS_00018745|organism=Clytia hemisphaerica|type=CDS|length=26892bp|location=Sequence derived from alignment at sc0000305:318038..331808- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018745 vs. Swiss-Prot (Human)
Match: CTL2 (Choline transporter-like protein 2 OS=Homo sapiens GN=SLC44A2 PE=1 SV=3) HSP 1 Score: 267.7 bits (683), Expect = 2.936e-80 Identity = 169/500 (33.80%), Postives = 275/500 (55.00%), Query Frame = 3
Query: 123 KKYDPNFKGPIKNRGCTDVICCVIFGVYMLGMIVIGVVAYVEGDPKRLLYATDSNGKVC---GADIPDKPYLYFFDMTKCLTKGASDPLAFVKQGFTCPTPQVCVKECPNFY----KAGIDKSIPIKDLVCKPSVNVTAQSDLFKLVQNGDCAPYYIETEEVFYRCIPKVAA--DALKAIDDLTLKDQDNNRINSTDVKEGQKSISILMNLQNLTMQIADELKAIWIWLLIGFVAAMIISVLYIVLARWITFPLVITTGVGVLGILGYATYYTINRYIELK-ESGESKEIV-WNFATSIDDFRRNETTWLVVGIISAVTXXXXXXXXXXXXHRVRIACALIAEASRAVCSMLSTLFFPILPWIFQLAWFTWFLVVLSFLMSNGTKQYQVSHNDTLYNL-------TVGDACNHETFES-----KYPNSKASCLFAKYKENVH--LLRMQVYHLFGWLWGWQFLVAFSECCLAGAFASYYWAFKKPKDIPSFPVFSSFGRT 1547
+KYDP FKGPI NRGCTD+ICCV + ++G + +G++A+ GDP++++Y TDS G+ C G +KPYL++F++ KC + PL ++ F CPTPQ+CV++CP+ Y A + C P + +++Q+GDC I ++ + RC P + A L ++ T +D +R N TD+ EG K + ++ + L M+I ++ W W++IG V AM +S+L+I+L R++ +V + V+ +LGY ++ Y L+ E+G +V F T + TWL II ++ +++ L+++FL R+ IA ALI EASRAV ++ +L +P++ T+FL+ L T + + N+ +Y + CN ETF S + PN++ F + H LL +Q+++ F + W F++A + LAGAFASYYWA +KP D+P+FP+FS+FGR
Sbjct: 16 QKYDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVKC-----ASPLVLLE--FQCPTPQICVEKCPDRYLTYLNARSSRDFEYYKQFCVPGFK--NNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHAYKGVLMVGNETTYEDGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDFRVYLHLRQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSLLYPLV---------TFFLLCLCIAYWASTAVFLSTSNEAVYKIFDDSPCPFTAKTCNPETFPSSNESRQCPNARCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWALRKPDDLPAFPLFSAFGRA 497 The following BLAST results are available for this feature:
BLAST of TCONS_00018745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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