TCONS_00018745-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018745-protein
Unique NameTCONS_00018745-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018745-protein ID=TCONS_00018745-protein|Name=TCONS_00018745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
MTSGDNPPLDSEDGEKKQLVEGRKKYDPNFKGPIKNRGCTDVICCVIFGV
YMLGMIVIGVVAYVEGDPKRLLYATDSNGKVCGADIPDKPYLYFFDMTKC
LTKGASDPLAFVKQGFTCPTPQVCVKECPNFYKAGIDKSIPIKDLVCKPS
VNVTAQSDLFKLVQNGDCAPYYIETEEVFYRCIPKVAADALKAIDDLTLK
DQDNNRINSTDVKEGQKSISILMNLQNLTMQIADELKAIWIWLLIGFVAA
MIISVLYIVLARWITFPLVITTGVGVLGILGYATYYTINRYIELKESGES
KEIVWNFATSIDDFRRNETTWLVVGIISAVTLLVLFLIMLFLFHRVRIAC
ALIAEASRAVCSMLSTLFFPILPWIFQLAWFTWFLVVLSFLMSNGTKQYQ
VSHNDTLYNLTVGDACNHETFESKYPNSKASCLFAKYKENVHLLRMQVYH
LFGWLWGWQFLVAFSECCLAGAFASYYWAFKKPKDIPSFPVFSSFGRT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010492XLOC_010492Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018745TCONS_00018745Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007603Choline transporter-likePFAMPF04515Choline_transpocoord: 326..498
e-value: 3.0E-32
score: 112.0

Blast
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BLAST of TCONS_00018745-protein vs. Swiss-Prot (Human)
Match: CTL2 (Choline transporter-like protein 2 OS=Homo sapiens GN=SLC44A2 PE=1 SV=3)

HSP 1 Score: 266.929 bits (681), Expect = 1.799e-81
Identity = 169/500 (33.80%), Postives = 275/500 (55.00%), Query Frame = 0 
Query:   24 KKYDPNFKGPIKNRGCTDVICCVIFGVYMLGMIVIGVVAYVEGDPKRLLYATDSNGKVC---GADIPDKPYLYFFDMTKCLTKGASDPLAFVKQGFTCPTPQVCVKECPNFY----KAGIDKSIPIKDLVCKPSVNVTAQSDLFKLVQNGDCAPYYIETEEVFYRCIPKVAA--DALKAIDDLTLKDQDNNRINSTDVKEGQKSISILMNLQNLTMQIADELKAIWIWLLIGFVAAMIISVLYIVLARWITFPLVITTGVGVLGILGYATYYTINRYIELK-ESGESKEIV-WNFATSIDDFRRNETTWLVVGIISAVTLLVLFLIMLFLFHRVRIACALIAEASRAVCSMLSTLFFPILPWIFQLAWFTWFLVVLSFLMSNGTKQYQVSHNDTLYNL-------TVGDACNHETFES-----KYPNSKASCLFAKYKENVH--LLRMQVYHLFGWLWGWQFLVAFSECCLAGAFASYYWAFKKPKDIPSFPVFSSFGRT 498
            +KYDP FKGPI NRGCTD+ICCV   + ++G + +G++A+  GDP++++Y TDS G+ C   G    +KPYL++F++ KC     + PL  ++  F CPTPQ+CV++CP+ Y     A   +        C P         + +++Q+GDC    I ++ +  RC P + A    L   ++ T +D   +R N TD+ EG K  + ++  + L M+I ++    W W++IG V AM +S+L+I+L R++   +V    + V+ +LGY  ++    Y  L+ E+G    +V   F T    +     TWL   II ++  +++ L+++FL  R+ IA ALI EASRAV  ++ +L +P++         T+FL+ L       T  +  + N+ +Y +            CN ETF S     + PN++    F   +   H  LL +Q+++ F + W   F++A  +  LAGAFASYYWA +KP D+P+FP+FS+FGR 
Sbjct:   16 QKYDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVKC-----ASPLVLLE--FQCPTPQICVEKCPDRYLTYLNARSSRDFEYYKQFCVPGFK--NNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHAYKGVLMVGNETTYEDGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDFRVYLHLRQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSLLYPLV---------TFFLLCLCIAYWASTAVFLSTSNEAVYKIFDDSPCPFTAKTCNPETFPSSNESRQCPNARCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWALRKPDDLPAFPLFSAFGRA 497
The following BLAST results are available for this feature:
BLAST of TCONS_00018745-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTL21.799e-8133.80Choline transporter-like protein 2 OS=Homo sapiens... [more]
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