TCONS_00018744 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018744
Unique Name	TCONS_00018744
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	614

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000305:313895..317188-
coding sequence from alignment at sc0000305:313895..317188-

transcript sequence

>TCONS_00018744 ID=TCONS_00018744|Name=TCONS_00018744|organism=Clytia hemisphaerica|type=transcript|length=614bp
aGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGTTGTTGTAGAT
GTTGTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCT
TACATCATGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTGCTAAAGA
AGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGAGCGATTGCAATCAACG
GCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGTGACCGGTGCA
ATTGGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGCTTTGCAACC
TGATAAATTGAAATACACCATAGTTCCTATCCTTatttgCACACTTGGAG
CATATATCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGAT
ACAATGTTCCTTAGCTTCCTGGAAGACATGGAGAGAAACAATGGAAGCGA
AGAGAAACCTTACTTCATGACTAAATCTCTGAGAAATATAATGAACCTTC
GTAATGAAGTcgaactaaaaaagaaaaaagattattcCCAAGTGGAATAA
TTATGATAGATCATCAATTCCATTAATATTAAGCACGCATTCAATCTTAA
TTTAATAACATGTC

Run BLAST on NCBI

protein sequence of TCONS_00018744-protein

>TCONS_00018744-protein ID=TCONS_00018744-protein|Name=TCONS_00018744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
EAHDNPVARFFICCCRCCLWCLENCLRFLNKNAYIMIAIYGKSYCSSAKE
AFSLLLRNPARAIAINGITEFILFIGKLLVTGAIGVASFFWFVQFNALQP
DKLKYTIVPILICTLGAYIVATLFFSVYDMGIDTMFLSFLEDMERNNGSE
EKPYFMTKSLRNIMNLRNEVELKKKKDYSQVE

Run BLAST on NCBI

transcript from alignment at sc0000305:313895..317188-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018744 ID=TCONS_00018744|Name=TCONS_00018744|organism=Clytia hemisphaerica|type=transcript|length=3294bp|location=Sequence derived from alignment at sc0000305:313895..317188- (Clytia hemisphaerica)
AGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGGTAAGACGATT
TTTAATTTATTTACATTCAGTCATTCTTTATTCATTACTTGTGGGGGAGT
GAAGGTTACAGGTATCCTTAAGCTTAAGGGTGCATTTTTGGAGCCAAGAA
GAACCTGTAAGGGCTAGAAAAAATCAGAAAATTATTAAATCTCAGTCCCA
TTAAGGGTCGAAAGAAAGGAAAATTTCAAGCTTTTGCCCCTTGATTAAAA
GATTGAAATTTGGTCAAATTAGCCCACTAAGGGTCGTGAAATTCACAAAA
TGCTCCTTTTTTTCCCGAGGATCAAAGTCAGGGGGCACACACCTGTCAGC
TTACAACCCTTGTACCCCCCCCCCCCCCCCCACCCGTGCTCTTTGTATAC
CCAGTCATTCTTTATAAGTTTGTTGAATGGTAATATTGTATTGAGTTTCA
ACCATGACTTTCTACTTTCACTTACAGTTGTTGTAGATGTTGTTTATGGT
GCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCTTACATCATGGTA
CGTATAACACCCAGGCTGTATGAAAGCGTGAAGACTGGAAATTTCAAATT
GTAAATCACTCCACAAATTTACTTAAATATGATTAAAAAGATAAATTTCG
CGGTGATTTAAAGTACCCTAAAGGAATTTTTTTAACATCTACAAATTTCA
AACCTCTCATTTCTTCTTTCAGTTGAAACTACAGTAGACTCTCGCTAATT
CGAACTTCTATTATTCGAACCTATTCCTTATCCCCGTCAAGGAGAAACCC
TCTTAATATACTTTCTTTAATGCTAATCACCCTGTAAACAAATAAAATTC
CCCGTTCGAGTTCGAATTAGGCGGAGTTATATGATTATAACGTGTTACTT
AAAGAATAAGAACTCTTCATTATTTTCTTATCCTTTCGTTCTAGATTGCC
ATCTATGGAAAGAGTTATTGTAGCTCTGCTAAAGAAGCTTTCTCCTTGCT
ATTGAGAAACCCGGCAAGGTACATATGAATTTTATCTCGTTTTTCTGTTT
TGTCTGTCTCAAGATTAATAATCTGCAGCGGAGAGGGAAGGGTAAAACTT
TTGGTAGAACCGGAACCTGATAGCGATTAGTGCTCGTTGAAAAGATAACC
AGGTGTGGAATAACACTAAATAAAAAAATTTGAAGAAGATTAACAGCGTT
TTAAAAATCTATTCTTTATTCCTCCTAGAGCGATTGCAATCAACGGCATC
ACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGTGACCGGTGCAATTGG
TGAGTGCGTTTCTACAATATCATTGTACAACGTTCATTTGAGAATTAGAA
CAGTAGTATGTCCTAACAAACATAGTAGTTCAATTGTTCATCTTGTCCAA
ACTTTTTAAAGGCGCCTCGAAAAAAATCATCATCCTTATTTTACTAACTC
ACTTTTCCTTTTTTTAATAGTTTTTAAATAATCGTGTAGAGACTAGTATA
CTTGATGGTCCTGAAAGCTTCATTGCTGTAATACCGGGTGCGCCACAAAA
AAGTTTCTCTCTTTAAAACTAATTTTCTCGAAATCTAAAAAGTTTAAAAG
AACCATTCCTACTCCATTGGAAAGAAGAAAGCGATAGACTTAAATTTTGA
TGGGTCATTTAATGAATTCGGTACATTAAATCGAAAGTTATGCTCAATTG
AATAAAAAAGTTACTTTCTGAAAGTGCTTAAAAACGTTAAAAATTGACCT
ATCAAATTAAACAGAAGCATAATTACATGATGCACCAGTTTTTTCGCTTC
AGTCATCAAAAATGATAATTAGCTGTCTAAATGTCCTTTTGTTATATAAA
GGAAGGTTGAATTACATTAAAAGGAAGAAAATTCGTTGAAAAAAGCCAAA
AAATCTGGTAAAATTCATAAAAATACATCAAATATGGGTTTCGACGTACA
TCCAGCCTTACATAGACTTTATCCAGTCTAAAACCAACAATCTGNAAAGT
AACTTTTTTTATTCAATTGAGCATAACTTTTGATCTAAAAAACCGAATTT
GATAAATGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCCAATGTAA
TAGGCATGGTTCTTTTAAAAATTTTAGATTTCAAGCAAATCAGTTTCAAA
GAGAGAAACTTTTTTGTGGCGCACCCGGTATTTACACCAATATTTACCTT
GGTAGAGGTAAATTGTCAATCGCACAGCCTCTTTAACATAAATTTATTCT
GTCAATTTGTAGGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGCT
TTGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTGTAAGTAT
AAATTTATATCTACCCATCCATATAATTTTTTAATTATATTTTTGGTGGA
ACATTGATCCTTTGAAAGGCGAAAGTGGGCGTGGTTGTGAATATAAATAA
GAAAAATAAACTCTCAACTAATTAGGTTCCAAACAACCAAAGCACTGTGA
AAAGAGAAAGATGAGAAGGACCCGATAAGATCCAAGTGATTTAGCTTAGA
AACAGGCTTATGTAGTTTATAAAGTCGATTTCCCATCTATCACTAGAACC
TGCTTAAAAATATATAGTCTTTTTCTCTTGGGTTTCTGTTTGTATGATCT
GTGAAACTGAATGAAAGCTATTACTTTTTTTAGATTTGCACACTTGGAGC
ATATATCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATA
CAATGTTCCTTAGCTTCCGTAAGTATCTTCTCTTAAATAGGCTTTATCTC
ACCCAGGGCATAATATTAACGAAGAATGTTTTATACGGAATCACTCAAAA
TAGCCCGGGTGTTTGCCATTAGTTTTATTGATTAATTTCAAGATTAGTGG
CAAACACCCGGGCTTTTTTGGGTGCTTCCGTATAAACGACACGTCATGAA
TATCACGAACCGGGCTATTCCAGTAGATATTTCACCTCTCATGCTATAAG
GAAGTTTTTTTTGGAAGCTGGAAGATTTATTTCTACCAAAACTTGAATAC
GGTCATTTTTGCTGAATTAAAGTTTTCCGTTAATTTTTCATCTACACAGT
GGAAGACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGA
CTAAATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAA
AAGAAAAAAGATTATTCCCAAGTGGAATAATTATGATAGATCATCAATTC
CATTAATATTAAGCACGCATTCAATCTTAATTTAATAACATGTC

Coding sequence (CDS) from alignment at sc0000305:313895..317188-

>TCONS_00018744 ID=TCONS_00018744|Name=TCONS_00018744|organism=Clytia hemisphaerica|type=CDS|length=3843bp|location=Sequence derived from alignment at sc0000305:313895..317188- (Clytia hemisphaerica)
TGGAAGACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATG
ACTAAATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAA
AAAGAAAAAAGATTATTCCCAAGTGGAATAAATTTGCACACTTGGAGCAT
ATATCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATACA
ATGTTCCTTAGCTTCCGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAA
TGCTTTGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTAGCG
ATTGCAATCAACGGCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCT
GGTGACCGGTGCAATTGATTGCCATCTATGGAAAGAGTTATTGTAGCTCT
GCTAAAGAAGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGTTGTTGTAG
ATGTTGTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATG
CTTACATCATGGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGT
GGAAGACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGA
CTAAATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAA
AAGAAAAAAGATTATTCCCAAGTGGAATAAATTTGCACACTTGGAGCATA
TATCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATACAA
TGTTCCTTAGCTTCCGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAAT
GCTTTGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTAGCGA
TTGCAATCAACGGCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTG
GTGACCGGTGCAATTGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTG
CTAAAGAAGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGTTGTTGTAGA
TGTTGTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGC
TTACATCATGGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGTG
GAAGACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGAC
TAAATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAAA
AGAAAAAAGATTATTCCCAAGTGGAATAAATTTGCACACTTGGAGCATAT
ATCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATACAAT
GTTCCTTAGCTTCCGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATG
CTTTGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTAGCGAT
TGCAATCAACGGCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTGG
TGACCGGTGCAATTGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTGC
TAAAGAAGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGTTGTTGTAGAT
GTTGTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCT
TACATCATGGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGTGG
AAGACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGACT
AAATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAAAA
GAAAAAAGATTATTCCCAAGTGGAATAAATTTGCACACTTGGAGCATATA
TCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATACAATG
TTCCTTAGCTTCCGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGC
TTTGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTAGCGATT
GCAATCAACGGCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGT
GACCGGTGCAATTGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTGCT
AAAGAAGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGTTGTTGTAGATG
TTGTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCTT
ACATCATGGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGTGGA
AGACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGACTA
AATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAAAAG
AAAAAAGATTATTCCCAAGTGGAATAAATTTGCACACTTGGAGCATATAT
CGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATACAATGT
TCCTTAGCTTCCGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGCT
TTGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTAGCGATTG
CAATCAACGGCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGTG
ACCGGTGCAATTGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTGCTA
AAGAAGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGTTGTTGTAGATGT
TGTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCTTA
CATCATGGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGTGGAA
GACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGACTAA
ATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAAAAGA
AAAAAGATTATTCCCAAGTGGAATAAATTTGCACACTTGGAGCATATATC
GTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATACAATGTT
CCTTAGCTTCCGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGCTT
TGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTAGCGATTGC
AATCAACGGCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGTGA
CCGGTGCAATTGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTGCTAA
AGAAGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGTTGTTGTAGATGTT
GTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCTTAC
ATCATGGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGTGGAAG
ACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGACTAAA
TCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAAAAGAA
AAAAGATTATTCCCAAGTGGAATAAATTTGCACACTTGGAGCATATATCG
TGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATACAATGTTC
CTTAGCTTCCGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGCTTT
GCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTAGCGATTGCA
ATCAACGGCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGTGAC
CGGTGCAATTGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTGCTAAA
GAAGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGTTGTTGTAGATGTTG
TTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCTTACA
TCATGGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010491	XLOC_010491	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018744-protein	TCONS_00018744-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000305	supercontig	sc0000305:313895..317188 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23693	0.351892	1.11809	1.00626	1.08542	1.01949	5.6918	4.52229	13.5008	10.3202	17.5651	11.693	12.9531	15.5544	16.0619	19.2988	4.28131	7.12274	5.90269	11.7778	5.74928	5.52694	1.79895	2.60566	2.80654	4.47592	0.466991	0.70231	6.24336	6.8219

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007603	Choline_transptr-like

Blast

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BLAST of TCONS_00018744 vs. Swiss-Prot (Human)
Match: CTL5 (Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=4)

HSP 1 Score: 152.525 bits (384), Expect = 2.145e-42
Identity = 75/153 (49.02%), Postives = 108/153 (70.59%), Query Frame = 2

Query:   80 RFLNKNAYIMIAIYGKSYCSSAKEAFSLLLRNPARAIAINGITEFILFIGKLLVTGAIGVASFFWFVQ---FNALQPDKLKYTIVPILICTLGAYIVATLFFSVYDMGIDTMFLSFLEDMERNNGSEEKPYFMTKSLRNIMNLRNEVELKKKK 529
            +FLN+NAYIMIAIYG+++C SAK+AF+LL+RN  +    + +T F+LF+GKLLV G+IGV +F +F Q     A  P  L Y  VP+L    G+Y++A  FFSVY M ++T+F+ FLED+ERN+GS  +PYF+T +L  I+  +  V  K+K+
Sbjct:  567 KFLNRNAYIMIAIYGRNFCRSAKDAFNLLMRNVLKVAVTDEVTYFVLFLGKLLVAGSIGVLAFLFFTQRLPVIAQGPASLNYYWVPLLTVIFGSYLIAHGFFSVYAMCVETIFICFLEDLERNDGSTARPYFVTPNLHGILIKKQLVPQKQKE 719

The following BLAST results are available for this feature:

BLAST of TCONS_00018744 vs. Swiss-Prot (Human)

BLAST of TCONS_00018744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTL5	2.145e-42	49.02	Choline transporter-like protein 5 OS=Homo sapiens...	[more]

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TCONS_00018744 (transcript) - C. hemisphaerica