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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018737 ID=TCONS_00018737|Name=TCONS_00018737|organism=Clytia hemisphaerica|type=transcript|length=2814bpRun BLAST on NCBI protein sequence of TCONS_00018737-protein >TCONS_00018737-protein ID=TCONS_00018737-protein|Name=TCONS_00018737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp MRNTTPRFFSINAGTSSLGFTVAWFLTWXPDSFQLMREPLHSDLPWPGFLRun BLAST on NCBI transcript from alignment at sc0000305:52107..71055- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018737 ID=TCONS_00018737|Name=TCONS_00018737|organism=Clytia hemisphaerica|type=transcript|length=18949bp|location=Sequence derived from alignment at sc0000305:52107..71055- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000305:52107..71055- >TCONS_00018737 ID=TCONS_00018737|Name=TCONS_00018737|organism=Clytia hemisphaerica|type=CDS|length=12048bp|location=Sequence derived from alignment at sc0000305:52107..71055- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018737 vs. Swiss-Prot (Human)
Match: SC5A9 (Sodium/glucose cotransporter 4 OS=Homo sapiens GN=SLC5A9 PE=1 SV=2) HSP 1 Score: 383.645 bits (984), Expect = 1.327e-119 Identity = 200/419 (47.73%), Postives = 280/419 (66.83%), Query Frame = 1
Query: 907 PDSFQLMREPLHSDLPWPGFLLGQTTVSIWYWCSDQVIVQRSLAAKSLSHAQGGTLLASALKLFPLYIMVMPGMISRVLFPNEVMCVDPDKCFEICESRTGCTNIALPLMVLRVMPSGLRGXXXXXXXXXXXSDLTSIFNSAATLFTMDIYQSVRKKADTGELMVVGRLFIVVLCVFAVLWVPLLKELQGGQLFLYIQSVSSYLSPPIAAVYCLALLWKRSNEKGTFWGMMVGFFAGITRMILDFSYPAPACNEVDTRPTIIKNVHFFYVALILFVLTIIVCIVVSLLTEPPSEEMIIRTTVWTKHDQTIRSDELEEEKQHNENDQLERTKRTSSKISPQNYESVELRSKEDQASDNQDQQGVESGTEVEQPE-PVTCWKRVFY-FICGLSNESAPEQQQSADEQRNHFQEVISLQQNP 2157
PD+F ++R+P+ D+PWPG + G T ++ W WC+DQVIVQRSL+AKSLSHA+GG++L LK+ P++ +VMPGMISR LFP+EV CVDPD C IC +R GC+NIA P +V+ +MP GLRG+M+AV+MAALMS LTSIFNS++TLFT+D++Q R+K+ ELMVVGR+F+V L V ++LW+P+++ GQLF YIQ+V+SYL+PPI A++ LA+ KR E G FWG++ G G+ RMIL+FSYPAPAC EVD RP ++K+ H+ Y A++L LT IV ++VSL T P EE + R T WT++ ELE+E + + ER + E + A ++ Q EQPE P W ++ + + CGLS PEQ S E+ Q++ S+++ P
Sbjct: 264 PDAFHILRDPVSGDIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGSVLGGYLKILPMFFIVMPGMISRALFPDEVGCVDPDVCQRICGARVGCSNIAYPKLVMALMPVGLRGLMIAVIMAALMSSLTSIFNSSSTLFTIDVWQRFRRKSTEQELMVVGRVFVVFLVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLKDFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPL---SELEKEAHESTPEISER-------------PAGECPAGGGAAENSSLGQ--------EQPEAPSRSWGKLLWSWFCGLSG--TPEQALSPAEKAALEQKLTSIEEEP 656 HSP 2 Score: 216.853 bits (551), Expect = 1.618e-59 Identity = 128/242 (52.89%), Postives = 180/242 (74.38%), Query Frame = 2
Query: 203 WSMFQSKRGTVSGYFLAGRFMTFIPVGMSLFXXXXXXXXXXXXXXXXXXXXXXXXXYEINAIIFIQLLGFVFLPVYIASGVCTLPEYIHKRFGGNRIRIFLSCLSLLLYIFTKVSVSLYSGALFIQQSVGWNLYVSIXXXXXXXXXXXXXXXXXXVIYLDTLMALVMVGGATVMSAIGFDRVGGFDGLRKKYMNAVPDEVLLGNTTCGIPRPDSFQLMREPLHSDLPWPGFLLGXRILFN*C 928
WS ++ RGT+ GYFLAGR M++ P+G SL +SN+GS IGL+G+GAA G+AV G+E NA + LG+VF+PVYIA+GV T+P+Y+ KRFGG RI++++S LSL+LYIFTK+S ++SGALFIQ ++GWNLY+S LL++T + TI GGL VIY D L ++MVGGA V+ +GF VG + GL ++Y A+P+ V + NTTC +PRPD+F ++R+P+ D+PWPG + G +L C
Sbjct: 54 WSSIRASRGTIGGYFLAGRSMSWWPIGASLMSSNVGSGLFIGLAGTGAAGGLAVGGFEWNATWLLLALGWVFVPVYIAAGVVTMPQYLKKRFGGQRIQVYMSVLSLILYIFTKISTDIFSGALFIQMALGWNLYLSTGILLVVTAVYTIAGGLMAVIYTDALQTVIMVGGALVLMFLGFQDVGWYPGLEQRYRQAIPN-VTVPNTTCHLPRPDAFHILRDPVSGDIPWPGLIFGLTVLATWC 294 The following BLAST results are available for this feature:
BLAST of TCONS_00018737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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